Novel genes that influence development in Streptomyces coelicolor

Journal of Bacteriology

Volumn 186, Issue 11, 2004, Pages 3570-3577

  Gehring, Amy M ^a,b   Wang, Stephanie T ^a   Kearns, Daniel B ^a   Storer, Narie Yoo ^a   Losick, Richard ^a  

^a HARVARD UNIVERSITY   (United States)

^b WILLIAMS COLLEGE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ACYL COENZYME A DEHYDROGENASE; BACTERIAL PROTEIN; METHIONINE; METHIONINE SYNTHASE; METHYLTRANSFERASE; REGULATOR PROTEIN;

AMINO ACID SYNTHESIS; ARTICLE; BACTERIAL CELL; BACTERIAL GENE; BACTERIAL GROWTH; BACTERIAL METABOLISM; BACTERIAL SPORE; BACTERIUM COLONY; BACTERIUM MUTANT; BIOSYNTHESIS; BLDA GENE; BLDM GENE; CELL STRUCTURE; GENE FUNCTION; GENETIC ANALYSIS; GENETIC CODE; GENETIC COMPLEMENTATION; GENETIC SCREENING; MYCELIUM; NONHUMAN; PRIORITY JOURNAL; SCO2525 GENE; SCO6938 GENE; SOIL MICROFLORA; SPOROGENESIS; STREPTOMYCES COELICOLOR;

ACYL-COA DEHYDROGENASE; AMINO ACID SEQUENCE; ANTI-BACTERIAL AGENTS; GENES, BACTERIAL; METHYLTRANSFERASES; MOLECULAR SEQUENCE DATA; MUTAGENESIS; PHENOTYPE; SPORES, BACTERIAL; STREPTOMYCES;

ACTINOBACTERIA (CLASS); BACTERIA (MICROORGANISMS); PROKARYOTA; STREPTOMYCES; STREPTOMYCES COELICOLOR; UNCULTURED ACTINOMYCETE;

EID: 2442637741     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.186.11.3570-3577.2004     Document Type: Article

References (45)

1. Abel, C. B. L., J. C. Lindon, D. Noble, B. A. M. Rudd, P. J. Sidebottom, and J. K. Nicholson. 1999. Characterization of metabolites in intact Streptomyces citricolor culture supernatants using high-resolution nuclear magnetic resonance and directly coupled high-pressure liquid chromatography-nuclear magnetic resonance spectroscopy. Anal. Biochem. 270:220-230.
2. Altschul, S. F., T. L. Madden, A. A. Schäfler, J. Zhang, Z. Zhang, W. Miller, and D. J. Lipman. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:3389-3402.
3. Banchio, C., and H. Gramajo. 2002. A stationary-phase acyl-coenzyme A synthetase of Streptomyces coelicolor A3(2) is necessary for the normal onset of antibiotic production. Appl. Environ. Microbiol. 68:4240-4246.
4. Bentley, S. D., K. F. Chater, A.-M. Cerdeño-Tárraga, G. L. Challis, N. R. Thomson, K. D. James, D. E. Harris, M. A. Quail, H. Keiser, D. Harper, A. Bateman, S. Brown, G. Chandra, C. W. Chen, M. Collins, A. Cronin, A. Fraser, A. Goble, J. Hidalgo, T. Hornsby, S. Howarth, C.-H. Huang, T. Keiser, L. Larke, L. Murphy, K. Oliver, S. O'Neil, E. Rabbinowitsch, M.-A. Rajandream, K. Rutherford, S. Rutter, K. Seeger, D. Saunders, S. Sharp, R. Squares, S. Squares, K. Taylor, T. Warren, A. Wietzorrek, J. Woodward, B. G. Barrell, J. Parkhill, and D. A. Hopwood. 2002. Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2). Nature 417:141-147.
5. Champness, W. 2000. Actinomycete development, antibiotic production, and phylogeny: questions and challenges, p. 11-31. In Y. V. Brun and L. J. Shimkets (ed.), Prokaryotic development. American Society for Microbiology, Washington, D.C.
6. Champness, W. C. 1988. New loci required for Streptomyces coelicolor morphological and physiological differentiation. J. Bacteriol. 170:1168-1174.
7. Chater, K. F. 2000. Developmental decisions during sporulation in the aerial mycelium in Streptomyces, p. 33.-48. In Y. V. Brun and L. J. Shimkets (ed.), Prokaryotic development. American Society for Microbiology, Washington, D.C.
8. Chater, K. F. 2001. Regulation of sporulation in Streptomyces coelicolor A3(2): a checkpoint multiplex? Curr. Opin. Microbiol. 4:667-673.
9. Chater, K. F., and S. Horinouchi. 2003. Signaling early developmental events in two highly diverged Streptomyces species. Mol. Microbiol. 48:9-15.
10. Endo, K., K. Hosono, T. Beppu, and K. Ueda. 2002. A novel extracytoplasmic phenol oxidase of Streptomyces: its possible involvement in the onset of morphogenesis. Microbiology 148:1767-1776.
11. Flett, F., V. Mersinias, and C. P. Smith. 1997. High efficiency intergenic conjugal transfer of plasmid DNA from Escherichia coli to methyl DNA-restricting streptomycetes. FEMS Microbiol. Lett. 155:223-229.
12. Gehring, A. M., J. R. Nodwell, S. M. Beverley, and R. Losick. 2000. Genome-wide insertional mutagenesis in Streptomyces coelicolor reveals additional genes involved in morphological differentiation. Proc. Natl. Acad. Sci. USA 97:9642-9647.
13. Gehring, A. M., N. J. Yoo, and R. Losick. 2001. RNA polymerase sigma factor that blocks morphological differentiation by Streptomyces coelicolor. J. Bacteriol. 183:5991-5996.
14. Gramajo, H. C., E. Takano, and M. J. Bibb. 1993. Stationary-phase production of the antibiotic actinorhodin in Streptomyces coelicolor A3(2) is transcriptionally regulated. Mol. Microbiol. 7:837-845.
15. Hopwood, D. A., H. Wildermuth, and H. M. Palmer. 1970. Mutants of Streptomyces coelicolor defective in sporulation. J. Gen. Microbiol. 61:397-408.
16. Huang, J., C.-J. Lih, K.-H. Pan, and S. N. Cohen. 2001. Global analysis of growth phase responsive gene expression and regulation of antibiotic bio-synthetic pathways in Streptomyces coelicolor using DNA microarrays. Genes Dev. 15:3183-3192.
17. Ikeda, K., T. Masujima, K. Suzuki, and M. Sugiyama. 1996. Cloning and sequence analysis of the highly expressed melanin-synthesizing gene operon from Streptomyces castaneoglobisporus. Appl. Microbiol. Biotechnol. 45:80-85.
18. Kelemen, G. H., K. A. Plaskitt, C. G. Lewis, K. C. Findlay, and M. J. Buttner. 1995. Deletion of DNA lying close to the glkA locus induces ectopic sporulation in Streptomyces coelicolor A3(2). Mol. Microbiol. 17:221-230.
19. Kieser, T., M. J. Bibb, M. J. Buttner, K. F. Chater, and D. A. Hopwood. 2000. Practical Streptomyces genetics. The John Innes Foundation, Norwich, England.
20. Kim, D.-J., J.-H. Huh, Y.-Y. Yang, C.-M. Kang, I.-H. Lee, C.-G. Hyun, S.-K. Hong, and J.-W. Suh. 2003. Accumulation of S-adenosyl-L-methionine enhances production of actinorhodin but inhibits sporulation in Streptomyces lividans TK23. J. Bacteriol. 185:592-600.
21. Kim, W.-S., Y. Wang, A. Fang, and A. L. Demain. 2000. Methionine interference in rapamycin production involves repression of demethylrapamycin methyltransferase and S-adenosylmethioine synthetase. Antimicrob. Agents Chemother. 44:2908-2910.
22. Komatsu, M., Y. Kuwahara, A. Hiroishi, K. Hosono, T. Beppu, and K. Ueda. 2003. Cloning of the conserved regulatory operon by its aerial mycelium-inducing activity in an amfR mutant of Streptomyces griseus. Gene 306:79-89.
23. Leskiw, B. K., R. Mah, E. J. Lawlor, and K. F. Chater. 1993. Accumulation of bldA-specified tRNA is temporally regulated in Streptomyces coelicolor A3(2). J. Bacteriol. 175:1995-2005.
24. Martin, J. L., J. Begun, M. J. McLeish, J. M. Caine, and G. L. Grunewald. 2001. Getting the adrenaline going: crystal structure of the adrenaline-synthesizing enzyme PNMT. Structure 9:977-985.
25. Matsubara, Y., Y. Indo, E. Naito, H. Ozasa, R. Glassberg, J. Vockley, Y. Ikeda, J. Kraus, and K. Tanaka. 1989. Molecular cloning and nucleotide sequence of cDNAs encoding the precursors of rat long chain acyl-coenzyme A, short chain acyl-coenzyme A, and isovaleryl-coenzyme A dehydrogenases: sequence homology of four enzymes of the acyl-CoA dehydrogenase family. J. Biol. Chem. 264:16321-16331.
26. Merrick, M. J. 1976. A morphological and genetic mapping study of bald colony mutants of Streptomyces coelicolor. J. Gen. Microbiol. 96:299-315.
27. Molle, V., and M. J. Buttner. 2000. Different alleles of the response regulator gene bldM arrest Streptomyces coelicolor development at distinct stages. Mol. Microbiol. 36:1265-1278.
28. Müller, R., K. Gerth, P. Brandt, H. Blöcker, and S. Beyer. 2000. Identification of an L-dopa decarboxylase gene from Sorangium cellulosum So ce90. Arch. Microbiol. 173:303-306.
29. Nagatsu, T. 1991. Genes for human catecholamine-synthesizing enzymes. Neurosci. Res. 12:315-345.
30. Nguyen, K. T., J. Tenor, H. Stettler, L. T. Nguyen, L. D. Nguyen, and C. J. Thompson. 2003. Colonial differentiation in Streptomyces coelicolor depends on translation of a specific codon within the adpA gene. J. Bacteriol. 185: 7291-7296.
31. Nodwell, J. R., and R. Losick. 1998. Purification of an extracellular signaling molecule involved in production of aerial mycelium by Streptomyces coelicolor. J. Bacteriol. 180:1334-1337.
32. Nodwell, J. R., M. Yang, D. Kuo, and R. Losick. 1999. Extracellular complementation and the identification of additional genes involved in aerial mycelium formation in Streptomyces coelicolor. Genetics 151:569-584.
33. Oh, S.-H., and K. F. Chater. 1997. Denaturation of circular or linear DNA facilitates targeted integrative transformation of Streptomyces coelicolor A3(2): possible relevance to other organisms. J. Bacteriol. 179:122-127.
34. Okamoto, S., A. Lezhava, T. Hosaka, Y. Okamoto-Hosoya, and K. Ochi. 2003. Enhanced expression of S-adenosylmethionine synthetase causes overproduction of actinorhodin in Streptomyces coelicolor A3(2). J. Bacteriol. 185:601-609.
35. Omura, S., H. Ikeda, J. Ishikawa, A. Hanamoto, C. Takahashi, M. Shinose, Y. Takahashi, H. Horikawa, H. Nakazawa, T. Osonoe, H. Kikuchi, T. Shiba, Y. Sakaki, and M. Hattori. 2001. Genome sequence of an industrial microorganism, Streptomyces avermitilis: deducing the ability of producing secondary metabolites. Proc. Natl. Acad. Sci. USA 98:12215-12220.
36. Redenbach, M., H. M. Keiser, D. Denapaite, A. Eichner, J. Cullum, H. Kinashi, and D. A. Hopwood. 1996. A set of ordered cosmids and a detailed genetic and physical map for the 8 Mb Streptomyces coelicolor A3(2) chromosome. Mol. Microbiol. 21:77-96.
37. Ryding, N. J., M. J. Bibb, V. Molle, K. C. Findlay, K. F. Chater, and M. J. Buttner. 1999. New sporulation loci in Streptomyces coelicolor A3(2). J. Bacteriol. 181:5419-5425.
38. Sandmeier, E., T. I. Hale, and P. Christen. 1994. Multiple evolutionary origin of pyridoxal-5′-phosphate-dependent amino acid decarboxylases. Eur. J. Biochem. 221:997-1002.
39. Sprusansky, O., L. Zhou, S. Jordan, J. White, and J. Westpheling. 2003. Identification of three new genes involved in morphogenesis and antibiotic production in Streptomyces coelicolor. J. Bacteriol. 185:6147-6157.
40. Takano, E., M. Tao, F. Long, M. J. Bibb, L. Wang, W. Li, M. J. Buttner, M. J. Bibb, Z. X. Deng, and K. F. Chater. 2003. A rare leucine codon in adpA is implicated in the morphological defect of bldA mutants of Streptomyces coelicolor. Mol. Microbiol. 50:475-486.
41. Takeuchi, T., K. Ogawa, H. Iinuma, H. Suda, K. Ukita, T. Nagatsu, M. Kato, and H. Umezawa. 1973. Monomaine oxidase inhibitors isolated from fermented broths. J. Antibiot. 26:162-167.
42. Vargha, G., V. Zs-Nagy, G. Lustyik, and G. Szabó. 1986. Methionine requirement of sporulation in a Streptomyces fradiae mutant. J. Gen. Microbiol. 132:2931-2936.
43. Weissbach, H., and N. Brot. 1991. Regulation of methionine synthesis in Escherichia coli. Mol. Microbiol. 5:1593-1597.
44. Willey, J., J. Schwedock, and R. Losick. 1993. Multiple extracellular signals govern the production of a morphogenetic protein involved in aerial mycelium formation by Streptomyces coelicolor. Genes Dev. 7:895-903.
45. Zhang, Y.-X., C. D. Denoya, D. D. Skinner, R. W. Fedechko, H. A. I. McArthur, M. R. Morgenstern, R. A. Davies, S. Lobo, K. A. Reynolds, and C. R. Hutchinson. 1999. Genes encoding acyl-CoA dehydrogenase (AcdH) homologues from Streptomyces coelicolor and Streptomyces avermitilis provide insights into the metabolism of small branched-chain fatty acids and macrolide antibiotic production. Microbiology 145:2323-2334.