LEC-2, a highly variable lectin in the lichen Peltigera membranacea

Symbiosis

Volumn 58, Issue 1-3, 2012, Pages 91-98

  Manoharan, Sheeba S ^a   Miao, Vivian P W ^b   Andrésson, Ólafur S ^a  

^a UNIVERSITY OF ICELAND   (Iceland)

^b UNIVERSITY OF BRITISH COLUMBIA   (Canada)

Author keywords

Evolution; LEC 2; Lectin; Peltigera membranacea; Polymorphism; Positive selection

Indexed keywords

EVOLUTIONARY BIOLOGY; GENE EXPRESSION; GENETIC MARKER; LICHEN; MOLECULAR ANALYSIS; NATURAL SELECTION; POLYMORPHISM; PROTEIN;

NOSTOC; PELTIGERA MEMBRANACEA;

EID: 84874942155     PISSN: 03345114     EISSN: 18787665     Source Type: Journal    
DOI: 10.1007/s13199-012-0206-y     Document Type: Conference Paper

References (50)

1. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403-410
2. Anisimova M, Gascuel O (2006) Approximate likelihood-ratio test for branches: A fast, accurate, and powerful alternative. Syst Biol 55:539-552
3. Arnold K, Bordoli L, Kopp J, Schwede T (2006) The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling. Bioinformatics 22:195-201
4. Ban M, Yoon HJ, Demirkan E, Utsumi S, Mikami B, Yagi F (2005) Structural basis of a fungal galectin from Agrocybe cylindracea for recognizing sialoconjugate. J Mol Biol 351:695-706
5. Baum J, Ward RH, Conway DJ (2002) Natural selection on the erythrocyte surface. Mol Biol Evol 19:223-229
6. Biswas S, Akey JM (2006) Genomic insights into positive selection. Trends Genet 22:437-446
7. Brown AC, Harrison LM, Kapulkin W, Jones BF, Sinha A, Savage A, Villalon N, Cappello M (2007) Molecular cloning and characterization of a C-type lectin from Ancylostoma ceylanicum: evidence for a role in hookworm reproductive physiology. Mol Biochem Parasitol 151:141-147
8. De Mita S, Santoni S, Hochu I, Ronfort J, Bataillon T (2006) Molecular evolution and positive selection of the symbiotic gene NORK in Medicago truncatula. J Mol Evol 62:234-244
9. Díaz EM, Vicente-Manzanares M, Sacristan M, Vicente C, Legaz ME (2011) Fungal lectin of Peltigera canina induces chemotropism of compatible Nostoc cells by constriction-relaxation pulses of cyanobiont cytoskeleton. Plant Signal Behav 6:1525-1536
10. Didelot X, Maiden MC (2010) Impact of recombination on bacterial evolution. Trends Microbiol 18:315-322
11. Ford MJ (2002) Applications of selective neutrality tests to molecular ecology. Mol Ecol 11:1245-1262
12. Galun M, Kardish N (1995) Lectins as determinants of symbiotic specificity in lichens. Cryptogamic Botany 5:144-148
13. Gouy M, Guindon S, Gascuel O (2010) SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Mol Biol Evol 27:221-224
14. Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, Gascuel O (2010) New algorithms and methods to estimate maximum-likelihood phylogenies: Assessing the performance of PhyML 3.0. Syst Biol 59:307-321
15. Guindon S, Gascuel O (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52:696-704
16. Hayes ML, Eytan RI, Hellberg ME (2010) High amino acid diversity and positive selection at a putative coral immunity gene (tachylectin-2). BMC Evol Biol 10:150
17. Hirabayashi J, Kasai K (1988) Complete amino acid sequence of a beta-galactoside-binding lectin from human placenta. J Biochem 104:1-4
18. Hughes AL (2007) Looking for Darwin in all the wrong places: The misguided quest for positive selection at the nucleotide sequence level. Heredity 99:364-373
19. Hughes AL, Nei M (1988) Pattern of nucleotide substitution at major histocompatibility complex class-I loci reveals overdominant selection. Nature 335:167-170
20. Huh CG, Aldrich J, Mottahedeh J, Kwon H, Johnson C, Marsh R (1998) Cloning and characterization of Physarum polycephalum tectonins. Homologues of Limulus lectin L-6. J Biol Chem 273:6565-6574
21. Iguchi A, Shinzato C, Forêt S, Miller DJ (2011) Identification of fast-evolving genes in the scleractinian coral Acropora using comparative EST analysis. PLoS One 6:e20140
22. Keane TM, Creevey CJ, Pentony MM, Naughton TJ, Mclnerney JO (2006) Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified. BMC Evol Biol 6:29
23. Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009) The SWISS-MODEL Repository and associated resources. Nucleic Acids Res 37:D387-D392
24. Lockhart CM, Rowell P, Stewart WDP (1978) Phytohaemagglutinins from the nitrogen-fixing lichens Peltigera canina and P. polydactyla. FEMS Microbiology Letters 3:127-130
25. Lyimo B, Yagi F, Minami Y (2011) Primary structure and specificity of a new member of galectin family from the amethyst deceiver mushroom Laccaria amethystina. Biosci Biotechnol Biochem 75:62-69
26. Miao VPW, Manoharan SS, Snæbjarnarson V, Andrésson ÓS (2012) Expression of lec-1, a mycobiont gene encoding a galectin-like protein in the lichen Peltigera membranacea. Symbiosis 57:23-31
27. Miao VPW, Rabenau A, Lee A (1997) Cultural and molecular characterization of photobionts of Peltigera membranacea. Lichenologist 29:571-586
28. Mohr P, Pommerening K (1985) Affinity chromatography - practical and theoretical aspects. Marcel Dekker, Inc., New York
29. Nei M, Gojobori T (1986) Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol Biol Evol 3:418-426
30. Nowrousian M, Cebula P (2005) The gene for a lectin-like protein is transcriptionally activated during sexual development, but is not essential for fruiting body formation in the filamentous fungus Sordaria macrospora. BMC Microbiology 5:64
31. Otálora MAG, Martinez I, O'Brien H, Molina MC, Aragón G, Lutzoni F (2010) Multiple origins of high reciprocal symbiotic specificity at an intercontinental spatial scale among gelatinous lichens (Collemataceae, Lecanoromycetes). Mol Phylogenet Evol 56:1089-1095
32. Paulsrud PER, Rikkinen J, Lindblad P (2000) Spatial patterns of photobiont diversity in some Nostoc-containing lichens. New Phytologist 146:291-299
33. Petit P, Lallemant R, Savoye D (1983) Purified phytolectin from the lichen Peltigera canina var canina which binds to the phycobiont cell walls and its use as cytochemical marker in situ. New Phytologist 94:103-110
34. Ren Q, Li M, Du J, Zhang CY, Wang W (2012) Immune response of four dual-CRD C-type lectins to microbial challenges in giant freshwater prawn Macrobrachium rosenbergii. Fish Shellfish Immunol 33:155-167
35. Rudi K, Skulberg OM, Jakobsen KS (1998) Evolution of cyanobacteria by exchange of genetic material among phyletically related strains. J Bacteriol 180:3453-3461
36. Schwede T, Kopp J, Guex N, Peitsch MC (2003) SWISS-MODEL: An automated protein homology-modeling server. Nucleic Acids Res 31:3381-3385
37. Sharon N, Lis H (2004) History of lectins: from hemagglutinins to biological recognition molecules. Glycobiology 14:53R-62R
38. Singh RS, Bhari R, Kaur HP (2010) Mushroom lectins: current status and future perspectives. Crit Rev Biotechnol 30:99-126
39. Singh RS, Bhari R, Kaur HP (2011) Current trends of lectins from microfungi. Crit Rev Biotechnol 31:193-210
40. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731-2739
41. Thompson JN (2001) Coevolution. in: Encyclopedia of Life Sciences, London, Nature publishing group
42. Walser PJ, Kües U, Aebi M, Künzler M (2005) Ligand interactions of the Coprinopsis cinerea galectins. Fungal Genet Biol 42:293-305
43. Wälti MA, Walser PJ, Thore S, Grünler A, Bednar M, Künzler M, Aebi M (2008) Structural basis for chitotetraose coordination by CGL3, a novel galectin-related protein from Coprinopsis cinerea. J Mol Biol 379:146-159
44. Weedall GD, Sherrington J, Paterson S, Hall N (2011) Evidence of gene conversion in genes encoding the Gal/GalNac lectin complex of Entamoeba. PLoS Negl Trop Dis 5:e1209
45. Werth S (2010) Population genetics of lichen-forming fungi - a review. Lichenologist 42:499-519
46. Wu Q, Li L, Zhang GF (2011) Crassostrea angulata bindin gene and the divergence of fucose-binding lectin repeats among three species of Crassostrea. Mar Biotechnol 13:327-335
47. Xavier BB, Miao VP, Jónsson ZO, Andrésson ÓS (2012) Mitochondrial genomes from the lichenized fungi Peltigera membranacea and Peltigera malacea: Features and phylogeny. Fungal Biol 116:802-814
48. Yagi F, Hiroyama H, Kodama S (2001) Agrocybe cylindracea lectin is a member of the galectin family. Glycoconj J 18:745-749
49. Yang N, Li DF, Feng L, Xiang Y, Liu W, Sun H, Wang DC (2009) Structural basis for the tumor cell apoptosis-inducing activity of an antitumor lectin from the edible mushroom Agrocybe aegerita. J Mol Biol 387:694-705
50. Yang Z, Bielawski JP (2000) Statistical methods for detecting molecular adaptation. Trends Ecol Evol 15:496-503