-
1
-
-
0042766481
-
Evolutionary and ecological functional genomics
-
Feder ME, Mitchell-Olds T, (2003) Evolutionary and ecological functional genomics. Nature Rev Genet 4: 649-655.
-
(2003)
Nature Rev Genet
, vol.4
, pp. 649-655
-
-
Feder, M.E.1
Mitchell-Olds, T.2
-
2
-
-
33645527334
-
Preface to the special issue: ecological and evolutionary genomics of populations in nature
-
Lee CE, Mitchell-Olds T, (2006) Preface to the special issue: ecological and evolutionary genomics of populations in nature. Mol Ecol 15: 1193-1196.
-
(2006)
Mol Ecol
, vol.15
, pp. 1193-1196
-
-
Lee, C.E.1
Mitchell-Olds, T.2
-
3
-
-
33746237567
-
Genomic insights into positive selection
-
Biswas S, Akey JM, (2006) Genomic insights into positive selection. Trends in Genet 22: 437-446.
-
(2006)
Trends in Genet
, vol.22
, pp. 437-446
-
-
Biswas, S.1
Akey, J.M.2
-
4
-
-
24944471763
-
Genomic islands of speciation in Anopheles gambiae
-
Turner TL, Hahn MW, Nuzhdin SV, (2005) Genomic islands of speciation in Anopheles gambiae. PLoS Biol 3: e285.
-
(2005)
PLoS Biol
, vol.3
-
-
Turner, T.L.1
Hahn, M.W.2
Nuzhdin, S.V.3
-
5
-
-
34748817463
-
Looking for Darwin in all the wrong places: the misguided quest for positive selection at the nucleotide sequence level
-
Hughes AL, (2007) Looking for Darwin in all the wrong places: the misguided quest for positive selection at the nucleotide sequence level. Heredity 99: 364-373.
-
(2007)
Heredity
, vol.99
, pp. 364-373
-
-
Hughes, A.L.1
-
6
-
-
0023764283
-
Pattern of nucleotide substitution at major histocompatibility complex class I loci reveals overdominant selection
-
Hughes AL, Nei M, (1988) Pattern of nucleotide substitution at major histocompatibility complex class I loci reveals overdominant selection. Nature 335: 167-170.
-
(1988)
Nature
, vol.335
, pp. 167-170
-
-
Hughes, A.L.1
Nei, M.2
-
7
-
-
0037230001
-
Pervasive adaptive evolution in mammalian fertilization proteins
-
Swanson WJ, Nielsen R, Yang Q, (2003) Pervasive adaptive evolution in mammalian fertilization proteins. Mol Biol Evol 20: 18-20.
-
(2003)
Mol Biol Evol
, vol.20
, pp. 18-20
-
-
Swanson, W.J.1
Nielsen, R.2
Yang, Q.3
-
8
-
-
0036899166
-
Biological and biomedical implications of the co-evolution of pathogens and their hosts
-
Woolhouse MEJ, Webster JP, Domingo E, Charlesworth B, Levin BR, (2002) Biological and biomedical implications of the co-evolution of pathogens and their hosts. Nature Genet 32: 569-577.
-
(2002)
Nature Genet
, vol.32
, pp. 569-577
-
-
Woolhouse, M.E.J.1
Webster, J.P.2
Domingo, E.3
Charlesworth, B.4
Levin, B.R.5
-
9
-
-
0003957712
-
Corals of the world
-
Australian Institute of Marine Science, Townsville, Australia
-
Veron JEN, (2000) Corals of the world. Australian Institute of Marine Science, Townsville, Australia.
-
(2000)
-
-
Veron, J.E.N.1
-
10
-
-
0003913999
-
Staghorn Corals of the World: A Revision of the Genus Acropora
-
CSIRO Publishing, Collingwood, Australia
-
Wallace CC, (1999) Staghorn Corals of the World: A Revision of the Genus Acropora. CSIRO Publishing, Collingwood, Australia.
-
(1999)
-
-
Wallace, C.C.1
-
11
-
-
0032736990
-
Reproductive and genetic evidence for a reticulate evolutionary history of mass spawning corals
-
Hatta M, Fukami H, Wang W, Omori M, Shimoike K, et al. (1999) Reproductive and genetic evidence for a reticulate evolutionary history of mass spawning corals. Mol Biol Evol 16: 1607-1613.
-
(1999)
Mol Biol Evol
, vol.16
, pp. 1607-1613
-
-
Hatta, M.1
Fukami, H.2
Wang, W.3
Omori, M.4
Shimoike, K.5
-
12
-
-
0034941931
-
The evolutionary history of the coral genus Acropora (Scleractinia, Cnidaria) based on a mitochondrial and nuclear marker: Reticulation incomplete lineage sorting, or morphological convergence?
-
van Oppen MJH, Mcdonald BJ, Willis B, Miller DJ, (2001) The evolutionary history of the coral genus Acropora (Scleractinia, Cnidaria) based on a mitochondrial and nuclear marker: Reticulation incomplete lineage sorting, or morphological convergence? Mol Biol Evol 18: 1315-1329.
-
(2001)
Mol Biol Evol
, vol.18
, pp. 1315-1329
-
-
van Oppen, M.J.H.1
McDonald, B.J.2
Willis, B.3
Miller, D.J.4
-
13
-
-
33750219604
-
The role of hybridization in the evolution of reef corals
-
Willis BL, van Oppen MJH, Miller DJ, Vollmer SV, Ayre DJ, (2006) The role of hybridization in the evolution of reef corals. Annu Rev Ecol Evol Syst 37: 489-517.
-
(2006)
Annu Rev Ecol Evol Syst
, vol.37
, pp. 489-517
-
-
Willis, B.L.1
van Oppen, M.J.H.2
Miller, D.J.3
Vollmer, S.V.4
Ayre, D.J.5
-
14
-
-
0030033286
-
Positive selection and sequence rearrangements generate extensive polymorphism in the gamete recognition protein Bindin
-
Metz EC, Palumbi SR, (1996) Positive selection and sequence rearrangements generate extensive polymorphism in the gamete recognition protein Bindin. Mol Biol Evol 13: 397-406.
-
(1996)
Mol Biol Evol
, vol.13
, pp. 397-406
-
-
Metz, E.C.1
Palumbi, S.R.2
-
15
-
-
57749202026
-
Speciation and the evolution of gamete recognition genes: pattern and process
-
Palumbi SR, (2009) Speciation and the evolution of gamete recognition genes: pattern and process. Heredity 102: 66-76.
-
(2009)
Heredity
, vol.102
, pp. 66-76
-
-
Palumbi, S.R.1
-
16
-
-
36148964004
-
Genomic and microarray approaches to coral reef conservation biology
-
Forêt S, Kassahn K, Grasso LC, Hayward DC, Iguchi A, et al. (2007) Genomic and microarray approaches to coral reef conservation biology. Coral Reefs 26: 475-486.
-
(2007)
Coral Reefs
, vol.26
, pp. 475-486
-
-
Forêt, S.1
Kassahn, K.2
Grasso, L.C.3
Hayward, D.C.4
Iguchi, A.5
-
17
-
-
33644921783
-
Adaptive evolution of multicolored fluorescent proteins in reef-building corals
-
Field SF, Bulina MY, Kelmanson IV, Bielawski JP, Matz MV, (2006) Adaptive evolution of multicolored fluorescent proteins in reef-building corals. J Mol Evol 62: 332-339.
-
(2006)
J Mol Evol
, vol.62
, pp. 332-339
-
-
Field, S.F.1
Bulina, M.Y.2
Kelmanson, I.V.3
Bielawski, J.P.4
Matz, M.V.5
-
18
-
-
45149108667
-
Coral life history and symbiosis: Functional genomic resources for two reef building Caribbean corals, Acropora palmata and Montastraea faveolata
-
Schwarz JA, Brokstein PB, Voolstra C, Terry AY, Miller DJ, et al. (2008) Coral life history and symbiosis: Functional genomic resources for two reef building Caribbean corals, Acropora palmata and Montastraea faveolata. BMC Genomics 9: 97.
-
(2008)
BMC Genomics
, vol.9
, pp. 97
-
-
Schwarz, J.A.1
Brokstein, P.B.2
Voolstra, C.3
Terry, A.Y.4
Miller, D.J.5
-
19
-
-
77952310399
-
High amino acid diversity and positive selection at a putative coral immunity gene (tachylectin-2)
-
Hayes ML, Eytan RI, Hellberg ME, (2010) High amino acid diversity and positive selection at a putative coral immunity gene (tachylectin-2). BMC Evol Biol 10: 150.
-
(2010)
BMC Evol Biol
, vol.10
, pp. 150
-
-
Hayes, M.L.1
Eytan, R.I.2
Hellberg, M.E.3
-
20
-
-
0347033327
-
EST analysis of the cnidarian Acropora millepora reveals extensive gene loss and rapid sequence divergence in the model invertebrates
-
Kortschak RD, Samuel G, Saint R, Miller DJ, (2003) EST analysis of the cnidarian Acropora millepora reveals extensive gene loss and rapid sequence divergence in the model invertebrates. Cur Biol 16: 2190-2195.
-
(2003)
Cur Biol
, vol.16
, pp. 2190-2195
-
-
Kortschak, R.D.1
Samuel, G.2
Saint, R.3
Miller, D.J.4
-
21
-
-
69449089723
-
More than just orphans: are taxonomically-restricted genes important in evolution?
-
Khalturin K, Hemmrich G, Fraune S, Augustin R, Bosch TC, (2009) More than just orphans: are taxonomically-restricted genes important in evolution? Trends Genet 25: 404-413.
-
(2009)
Trends Genet
, vol.25
, pp. 404-413
-
-
Khalturin, K.1
Hemmrich, G.2
Fraune, S.3
Augustin, R.4
Bosch, T.C.5
-
22
-
-
58949090247
-
Microarray analysis identifies candidate genes for key roles in coral development
-
Grasso LC, Maindonald J, Rudd S, Hayward DC, Saint R, et al. (2008) Microarray analysis identifies candidate genes for key roles in coral development. BMC Genomics 9: 540.
-
(2008)
BMC Genomics
, vol.9
, pp. 540
-
-
Grasso, L.C.1
Maindonald, J.2
Rudd, S.3
Hayward, D.C.4
Saint, R.5
-
23
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ, (1990) Basic local alignment search tool. J Mol Biol 215: 403-410.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
24
-
-
0022507362
-
Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
-
Nei M, Gojobori T, (1986) Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol Biol Evol 3: 418-426.
-
(1986)
Mol Biol Evol
, vol.3
, pp. 418-426
-
-
Nei, M.1
Gojobori, T.2
-
25
-
-
34547781750
-
MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
-
Tamura K, Dudley J, Nei M, Kumar S, (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24: 1596-1599.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 1596-1599
-
-
Tamura, K.1
Dudley, J.2
Nei, M.3
Kumar, S.4
-
26
-
-
0027968068
-
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson JD, Higgins DG, Gibson TJ, (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22: 4673-4680.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
29
-
-
77950806408
-
New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0."
-
Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, et al. (2010) New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0." Systematic Biol 59: 307-321.
-
(2010)
Systematic Biol
, vol.59
, pp. 307-321
-
-
Guindon, S.1
Dufayard, J.F.2
Lefort, V.3
Anisimova, M.4
Hordijk, W.5
-
30
-
-
0041386108
-
MRBAYES 3: Bayesian phylogenetic inference under mixed models
-
Ronquist F, Huelsenbeck JP, (2003) MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574.
-
(2003)
Bioinformatics
, vol.19
, pp. 1572-1574
-
-
Ronquist, F.1
Huelsenbeck, J.P.2
-
31
-
-
34547803197
-
PAML 4: a program package for phylogenetic analysis by maximum likelihood
-
Yang Z, (2007) PAML 4: a program package for phylogenetic analysis by maximum likelihood. Mol Biol Evol 24: 1586-1591.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 1586-1591
-
-
Yang, Z.1
-
32
-
-
0028167669
-
Purification and characterization of four Ca2+-dependent lectins from the marine invertebrate, Cucumaria echinata
-
Hatakeyama T, Kohzaki H, Nagatomo H, Yamasaki N, (1994) Purification and characterization of four Ca2+-dependent lectins from the marine invertebrate, Cucumaria echinata. J Biochem (Tokyo) 116: 209-214.
-
(1994)
J Biochem (Tokyo)
, vol.116
, pp. 209-214
-
-
Hatakeyama, T.1
Kohzaki, H.2
Nagatomo, H.3
Yamasaki, N.4
-
33
-
-
77949914517
-
New tricks with old genes: the genetic bases of novel cnidarian traits
-
Forêt S, Knack B, Houliston E, Momose T, Manuel M, et al. (2010) New tricks with old genes: the genetic bases of novel cnidarian traits. Trends Genet 26: 154-158.
-
(2010)
Trends Genet
, vol.26
, pp. 154-158
-
-
Forêt, S.1
Knack, B.2
Houliston, E.3
Momose, T.4
Manuel, M.5
-
34
-
-
4344713294
-
Crystal structure of the hemolytic lectin CEL-III isolated from the marine invertebrate Cucumaria echinata: implications of domain structure for its membrane pore-formation mechanism
-
Uchida T, Yamasaki T, Eto S, Sugawara H, Kurisu G, et al. (2004) Crystal structure of the hemolytic lectin CEL-III isolated from the marine invertebrate Cucumaria echinata: implications of domain structure for its membrane pore-formation mechanism. J Biol Chem 279: 37133-37141.
-
(2004)
J Biol Chem
, vol.279
, pp. 37133-37141
-
-
Uchida, T.1
Yamasaki, T.2
Eto, S.3
Sugawara, H.4
Kurisu, G.5
-
35
-
-
1642463804
-
The lectin-complement pathway-its role in innate immunity and evolution
-
Fujita T, Matsushita M, Endo Y, (2004) The lectin-complement pathway-its role in innate immunity and evolution. Immunol Rev 198: 185-202.
-
(2004)
Immunol Rev
, vol.198
, pp. 185-202
-
-
Fujita, T.1
Matsushita, M.2
Endo, Y.3
-
36
-
-
0034015805
-
The D-galactose-binding lectin of the octocoral Sinularia lochmodes: characterization and possible relationship to the symbiotic dinoflagellates
-
Jimbo M, Yonohara T, Koike K, Koike K, Sakai R, et al. (2000) The D-galactose-binding lectin of the octocoral Sinularia lochmodes: characterization and possible relationship to the symbiotic dinoflagellates. Comp Biochem Physiol B 125: 227-236.
-
(2000)
Comp Biochem Physiol B
, vol.125
, pp. 227-236
-
-
Jimbo, M.1
Yonohara, T.2
Koike, K.3
Koike, K.4
Sakai, R.5
-
37
-
-
33750599346
-
Lectin/glycan interactions play a role in recognition in a coral/dinoflagellate symbiosis
-
Wood-Charlson EM, Hollingsworth LL, Krupp DA, Weis VM, (2006) Lectin/glycan interactions play a role in recognition in a coral/dinoflagellate symbiosis. Cell Microbiol 8: 1985-1993.
-
(2006)
Cell Microbiol
, vol.8
, pp. 1985-1993
-
-
Wood-Charlson, E.M.1
Hollingsworth, L.L.2
Krupp, D.A.3
Weis, V.M.4
-
38
-
-
49649089055
-
An ancient and variable mannose-binding lectin from the coral Acropora millepora binds both pathogens and symbionts
-
Kvennefors EC, Leggat W, Hoegh-Guldberg O, Degnan BM, Barnes AC, (2008) An ancient and variable mannose-binding lectin from the coral Acropora millepora binds both pathogens and symbionts. Dev Comp Immunol 32: 1582-1592.
-
(2008)
Dev Comp Immunol
, vol.32
, pp. 1582-1592
-
-
Kvennefors, E.C.1
Leggat, W.2
Hoegh-Guldberg, O.3
Degnan, B.M.4
Barnes, A.C.5
-
39
-
-
77956414488
-
Analysis of evolutionarily conserved innate immune components in coral links immunity and symbiosis
-
Kvennefors EC, Leggat W, Kerr CC, Ainsworth TD, Hoegh-Guldberg O, et al. (2010) Analysis of evolutionarily conserved innate immune components in coral links immunity and symbiosis. Dev Comp Immunol 34: 1219-1229.
-
(2010)
Dev Comp Immunol
, vol.34
, pp. 1219-1229
-
-
Kvennefors, E.C.1
Leggat, W.2
Kerr, C.C.3
Ainsworth, T.D.4
Hoegh-Guldberg, O.5
-
40
-
-
29444452921
-
Molecular signatures of natural selection
-
Nielesen R, (2005) Molecular signatures of natural selection. Annu Rev Genet 39: 197-218.
-
(2005)
Annu Rev Genet
, vol.39
, pp. 197-218
-
-
Nielesen, R.1
-
41
-
-
0035993683
-
The highly cross-fertile coral species, Acropora hyacinthus and Acropora cytherea, constitute statistically distinguishable lineages
-
Márquez LM, van Oppen MJH, Willis BL, Reyes A, Miller DJ, (2002) The highly cross-fertile coral species, Acropora hyacinthus and Acropora cytherea, constitute statistically distinguishable lineages. Mol Ecol 11: 1339-1349.
-
(2002)
Mol Ecol
, vol.11
, pp. 1339-1349
-
-
Márquez, L.M.1
van Oppen, M.J.H.2
Willis, B.L.3
Reyes, A.4
Miller, D.J.5
|