The morphology, behaviour and molecular phylogeny of Phytophthora taxon Salixsoil and its redesignation as Phytophthora lacustris sp. nov.

Plant Pathology

Volumn 62, Issue 2, 2013, Pages 355-369

  Nechwatal, J ^a   Bakonyi, J ^b   Cacciola, S O ^c   Cooke, D E L ^d   Jung, T ^e,f   Nagy, Z A ^b   Vannini, A ^g   Vettraino, A M ^g   Brasier, C M ^h  

^a Bavarian State Research Center for Agriculture (LfL)   (Germany)

^b INSTITUTE OF EXPERIMENTAL MEDICINE   (Hungary)

^c UNIVERSITY OF CATANIA   (Italy)

^d SCOTTISH CROP RESEARCH INSTITUTE   (United Kingdom)

^e UNIVERSITY OF ALGARVE   (Portugal)

^f Phytophthora Research and Consultancy   (Germany)

^g UNIVERSITY OF TUSCIA   (Italy)

^h FOREST RESEARCH   (United Kingdom)

Author keywords

Alnus; Phylogeny; Phytophthora ITS Clade 6; Prunus; Riparian habitat; Tree pathogen

Indexed keywords

ADAPTATION; BEHAVIORAL ECOLOGY; CLADISTICS; DECIDUOUS TREE; FUNGUS; HABITAT TYPE; HOST-PATHOGEN INTERACTION; INOCULATION; MITOCHONDRION; MOLECULAR ANALYSIS; MORPHOLOGY; PHYLOGENY; SAPROTROPHY; TAXONOMY;

AUSTRALIA; NEW ZEALAND;

ALNUS; PHYTOPHTHORA; PHYTOPHTHORA GONAPODYIDES; PRUNUS; SALIX;

EID: 84874937401     PISSN: 00320862     EISSN: 13653059     Source Type: Journal    
DOI: 10.1111/j.1365-3059.2012.02638.x     Document Type: Article

References (31)

1. Bakonyi J, Justesen AF, 2007. Genetic relationship of Pyrenophora graminea, P. teres f. maculata and P. teres f. teres assessed by RAPD analysis. Journal of Phytopathology155, 76-83.
2. Brasier CM, 1991. Current questions in Phytophthora systematics: the role of the population approach. In: Lucas JA, Shattock RC, Shaw DS, eds. Phytophthora. Cambridge, UK: Cambridge University Press, 104-28.
3. Brasier CM, 2008. The biosecurity threat to the UK and global environment from international trade in plants. Plant Pathology57, 792-808.
4. Brasier CM, Hamm PB, Hansen EM, 1993. Cultural characteristics, protein patterns and unusual mating behaviour of Phytophthora gonapodyides isolates from Britain and North America. Mycological Research97, 1287-98.
5. Brasier CM, Sanchez-Hernandez E, Kirk SA, 2003a. Phytophthora inundata sp. nov., a part heterothallic pathogen of trees and shrubs in wet or flooded soils. Mycological Research107, 477-84.
6. Brasier CM, Cooke DEL, Duncan JM, Hansen EM, 2003b. Multiple new phenotypic taxa from trees and riparian ecosystems in Phytophthora gonapodyides-P. megasperma ITS Clade 6, which tend to be high-temperature tolerant and either inbreeding or sterile. Mycological Research107, 277-90.
7. Burgess TI, Webster JL, Ciampini JA, White DW, Hardy GEStJ, Stukely MJC, 2009. Re-evaluation of Phytophthora species isolated during 30years of vegetation health surveys in Western Australia using molecular techniques. Plant Disease93, 215-23.
8. Cacciola SO, Williams NA, Cooke DEL, Duncan JM, 2001. Molecular identification and detection of Phytophthora species on some important Mediterranean plants including sweet chestnut. Forest Snow and Landscape Research76, 351-6.
9. Cooke DEL, Drenth A, Duncan JM, Wagels G, Brasier CM, 2000. A molecular phylogeny of Phytophthora and related oomycetes. Fungal Genetics and Biology30, 17-32.
10. Erwin DC, Ribeiro OK, 1996. Phytophthora Diseases Worldwide. St Paul, MN, USA: APS Press.
11. Hansen EM, Delatour C, 1999. Phytophthora species in oak forests of north east France. Annales des Sciences Forestiere56, 539-47.
12. Jung T, Blaschke M, 2004. Phytophthora root and collar rot of alders in Bavaria: distribution, modes of spread and possible management strategies. Plant Pathology53, 197-208.
13. Jung T, Nechwatal J, 2008. Phytophthora gallica sp. nov., a new species from rhizosphere soil of declining oak and reed stands in France and Germany. Mycological Research112, 1195-205.
14. Jung T, Blaschke H, Neumann P, 1996. Isolation, identification and pathogenicity of Phytophthora species from declining oak stands. European Journal of Forest Pathology26, 253-72.
15. Jung T, Stukely MJC, Hardy GEStJ et al., 2011a. Multiple new Phytophthora species from ITS Clade 6 associated with natural ecosystems in Australia: evolutionary and ecological implications. Persoonia26, 13-39.
16. Jung T, Stukely MJC, Hardy GEStJ, Hüberli D, Burgess TI, 2011b. Phytophthora fluvialis. Fungal Planet 87. Persoonia26, 147.
17. Kroon LPNM, Bakker FT, van den Bosch GBM, Bonants PJM, Flier WG, 2004. Phylogenetic analysis of Phytophthora species based on mitochondrial and nuclear DNA sequences. Fungal Genetics and Biology41, 766-82.
18. Milne I, Lindner D, Bayer M et al., 2008. TOPALI v. 2: a rich graphical interface for evolutionary analyses of multiple alignments on HPC clusters and multi-core desktops. Bioinformatics25, 126-7.
19. Moralejo E, Pérez-Sierra AM, Álvarez LA, Belbahri L, Lefort F, Descals E, 2008. Multiple alien Phytophthora taxa discovered on diseased ornamental plants in Spain. Plant Pathology58, 100-10.
20. Nechwatal J, Mendgen K, 2006. Widespread detection of Phytophthora taxon Salixsoil in the littoral zone of Lake Constance, Germany. European Journal of Plant Pathology114, 261-4.
21. Orlikowski LB, Thinggaard K, Ptaszek M, Rodziewicz A, Nechwatal J, Jung T, 2011. Phytophthora root and collar rot of mature Fraxinus excelsior in forest stands in Poland and Denmark. Forest Pathology41, 510-9.
22. Qi J, Asano T, Jinno M et al., 2005. Characterization of a Phytophthora mating hormone. Science309, 1828.
23. Rambaut A, Drummond AJ, 2007. TRACER v. 1.4 [http://beast.bio.ed.ac.uk/Tracer]. Accessed 10 May 2012.
24. Reeser PW, Sutton W, Hansen EM, Remigi P, Adams GC, 2011. Phytophthora species in forest streams in Oregon and Alaska. Mycologia103, 22-35.
25. Ronquist F, Huelsenbeck JP, 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics19, 1572-4.
26. Scott ES, Wicks TJ, Lee TC, 1992. The development of an assay for resistance to Phytophthora cambivora in almond rootstocks using shoots excised from tissue cultures. Plant Pathology41, 639-45.
27. Thompson JD, Higgins DG, Gibson TJ, 1994. CLUSTAL W: improving the sensitivity of multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research22, 4673-80.
28. Vettraino AM, Belisario A, Maccaroni M, Vannini A, 2003. Evaluation of root damage to English walnut caused by five Phytophthora species. Plant Pathology52, 491-5.
29. Waterhouse GM, 1963. Key to the Species of Phytophthora de Bary. Kew, UK: CMI. Mycological Papers no. 92.
30. White TJ, Bruns T, Lee S, Taylor J, 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ, eds. PCR Protocols. A Guide to Methods and Applications. San Diego, CA, USA: Academic Press, 315-22.
31. Wirsel SGR, Runge-Froböse C, Ahren DG, Kemen E, Oliver RP, Mendgen KW, 2002. Four or more species of Cladosporium sympatrically colonize Phragmites australis. Fungal Genetics and Biology25, 99-113.