메뉴 건너뛰기




Volumn 29, Issue 10, 2013, Pages 3370-3379

Facilitating mismatch discrimination by surface-affixed PNA probes via ionic regulation

Author keywords

[No Author keywords available]

Indexed keywords

CATION CONCENTRATIONS; DETECTION ABILITY; EFFECTS OF ANIONS; FLUORESCENCE MEASUREMENTS; HYDROPHOBIC INTERACTIONS; NUCLEIC ACID DETECTION; PEPTIDE NUCLEIC ACID; SINGLE-BASE MISMATCH;

EID: 84874889804     PISSN: 07437463     EISSN: 15205827     Source Type: Journal    
DOI: 10.1021/la400125x     Document Type: Article
Times cited : (15)

References (47)
  • 1
    • 0026341239 scopus 로고
    • Sequence selective recognition of DNA by strand displacement with a thymine substituted polyamide
    • Nielsen, P. E.; Egholm, M.; Berg, R. H.; Buchardt, O. Sequence selective recognition of DNA by strand displacement with a thymine substituted polyamide Science 1991, 254, 1497-1500
    • (1991) Science , vol.254 , pp. 1497-1500
    • Nielsen, P.E.1    Egholm, M.2    Berg, R.H.3    Buchardt, O.4
  • 2
    • 79957801840 scopus 로고    scopus 로고
    • An atomic force microscopy investigation on self-assembled peptide nucleic acid structures on gold(111) surface
    • Ghosh, S.; Mukhopadhyay, R. An atomic force microscopy investigation on self-assembled peptide nucleic acid structures on gold(111) surface J. Colloid Interface Sci. 2011, 360, 52-60
    • (2011) J. Colloid Interface Sci. , vol.360 , pp. 52-60
    • Ghosh, S.1    Mukhopadhyay, R.2
  • 3
    • 0035972783 scopus 로고    scopus 로고
    • Self-assembled monolayer of ssDNA on Au(111) substrate
    • Wang, H.; Tang, Z.; Li, Z.; Wang, E. Self-assembled monolayer of ssDNA on Au(111) substrate Surf. Sci. 2011, 480, L389-L394
    • (2011) Surf. Sci. , vol.480
    • Wang, H.1    Tang, Z.2    Li, Z.3    Wang, E.4
  • 4
    • 0030825711 scopus 로고    scopus 로고
    • Characterization of DNA probes immobilized on gold surfaces
    • Herne, T. M.; Tarlov, M. J. Characterization of DNA probes immobilized on gold surfaces J. Am. Chem. Soc. 1997, 119, 8916-8920
    • (1997) J. Am. Chem. Soc. , vol.119 , pp. 8916-8920
    • Herne, T.M.1    Tarlov, M.J.2
  • 9
    • 0032581927 scopus 로고    scopus 로고
    • Using self-assembly to control the structure of DNA monolayers on gold: A neutron reflectivity study
    • Levicky, R.; Herne, T. M.; Tarlov, M. J.; Satija, S. K. Using self-assembly to control the structure of DNA monolayers on gold: a neutron reflectivity study J. Am. Chem. Soc. 1998, 120, 9787-9792
    • (1998) J. Am. Chem. Soc. , vol.120 , pp. 9787-9792
    • Levicky, R.1    Herne, T.M.2    Tarlov, M.J.3    Satija, S.K.4
  • 10
    • 0034674978 scopus 로고    scopus 로고
    • Kinetic control of hybridization in surface immobilized DNA monolayer films
    • Peterson, A. W.; Heaton, R. J.; Georgiadis, R. Kinetic control of hybridization in surface immobilized DNA monolayer films J. Am. Chem. Soc. 2000, 122, 7837-7838
    • (2000) J. Am. Chem. Soc. , vol.122 , pp. 7837-7838
    • Peterson, A.W.1    Heaton, R.J.2    Georgiadis, R.3
  • 11
    • 0035945270 scopus 로고    scopus 로고
    • The effect of surface probe density on DNA hybridization
    • Peterson, A. W.; Heaton, R. J.; Georgiadis, R. The effect of surface probe density on DNA hybridization Nucleic Acids Res. 2001, 29, 5163-5168
    • (2001) Nucleic Acids Res. , vol.29 , pp. 5163-5168
    • Peterson, A.W.1    Heaton, R.J.2    Georgiadis, R.3
  • 12
    • 33748569797 scopus 로고    scopus 로고
    • Defects can increase the melting temperature of DNA-nanoparticle assemblies
    • Harris, N. C.; Kiang, C. H. Defects can increase the melting temperature of DNA-nanoparticle assemblies J. Phys. Chem. B 2006, 110, 16393-16396
    • (2006) J. Phys. Chem. B , vol.110 , pp. 16393-16396
    • Harris, N.C.1    Kiang, C.H.2
  • 14
    • 84862472865 scopus 로고    scopus 로고
    • Ordered self-assembled monolayers of peptide nucleic acids with DNA recognition capability
    • Briones, C.; Marti, E. M.; Navarrob, G. C.; Parroa, V.; Romanb, E.; Gago, J. A. M. Ordered self-assembled monolayers of peptide nucleic acids with DNA recognition capability Phys. Rev. Lett. 2004, 93, 2081031-2081034
    • (2004) Phys. Rev. Lett. , vol.93 , pp. 2081031-2081034
    • Briones, C.1    Marti, E.M.2    Navarrob, G.C.3    Parroa, V.4    Romanb, E.5    Gago, J..A.M.6
  • 15
    • 33847341111 scopus 로고    scopus 로고
    • A DNA biosensor based on peptide nucleic acids on gold surfaces
    • Marti, E. M.; Briones, C.; Pradier, C. M.; Gago, J. A. M. A DNA biosensor based on peptide nucleic acids on gold surfaces Biosens. Bioelectron. 2007, 22, 1926-1932
    • (2007) Biosens. Bioelectron. , vol.22 , pp. 1926-1932
    • Marti, E.M.1    Briones, C.2    Pradier, C.M.3    Gago, J.A.M.4
  • 18
    • 0034776753 scopus 로고    scopus 로고
    • Investigating the kinetics of DNA-DNA and PNA-DNA interactions using surface plasmon resonance-enhanced fluorescence spectroscopy
    • Kambhampati, W.; Nielsen, P. E.; Knoll, W. Investigating the kinetics of DNA-DNA and PNA-DNA interactions using surface plasmon resonance-enhanced fluorescence spectroscopy Biosens. Bioelectron. 2001, 16, 1109-1118
    • (2001) Biosens. Bioelectron. , vol.16 , pp. 1109-1118
    • Kambhampati, W.1    Nielsen, P.E.2    Knoll, W.3
  • 19
    • 21444436643 scopus 로고    scopus 로고
    • In situ hybridization of PNA/DNA studied label-free by electrochemical impedance spectroscopy
    • Liu, J.; Tian, S.; Nielsen, P. E.; Knoll, W. In situ hybridization of PNA/DNA studied label-free by electrochemical impedance spectroscopy Chem. Commun. 2005, 2969-2971
    • (2005) Chem. Commun. , pp. 2969-2971
    • Liu, J.1    Tian, S.2    Nielsen, P.E.3    Knoll, W.4
  • 20
    • 50849090268 scopus 로고    scopus 로고
    • Electrostatic repulsion and steric hindrance effects of surface probe density on deoxyribonucleic acid (DNA)/peptide nucleic acid (PNA) hybridization
    • Xu, F.; Pellino, A. M.; Knoll, W. Electrostatic repulsion and steric hindrance effects of surface probe density on deoxyribonucleic acid (DNA)/peptide nucleic acid (PNA) hybridization Thin Solid Films 2008, 516, 8634-8639
    • (2008) Thin Solid Films , vol.516 , pp. 8634-8639
    • Xu, F.1    Pellino, A.M.2    Knoll, W.3
  • 21
    • 65449147258 scopus 로고    scopus 로고
    • Kinetic and affinity analyses of hybridization reactions between peptide nucleic acid probes and DNA targets using surface Plasmon field-enhanced fluorescence spectroscopy
    • Park, H.; Germini, S.; Sforza, S.; Corradini, R.; Marchelli, R.; Knoll, W. Kinetic and affinity analyses of hybridization reactions between peptide nucleic acid probes and DNA targets using surface Plasmon field-enhanced fluorescence spectroscopy Biointerphases 2006, 1, 113-122
    • (2006) Biointerphases , vol.1 , pp. 113-122
    • Park, H.1    Germini, S.2    Sforza, S.3    Corradini, R.4    Marchelli, R.5    Knoll, W.6
  • 23
    • 0342618762 scopus 로고    scopus 로고
    • Kinetics for hybridization of peptide nucleic acids (PNA) with DNA and RNA studied with the BIAcore technique
    • Jensen, K. K.; Orum, H.; Nielsen, P. E.; Norden, B. Kinetics for hybridization of peptide nucleic acids (PNA) with DNA and RNA studied with the BIAcore technique Biochemistry 1997, 36, 5072-5077
    • (1997) Biochemistry , vol.36 , pp. 5072-5077
    • Jensen, K.K.1    Orum, H.2    Nielsen, P.E.3    Norden, B.4
  • 28
    • 33749762269 scopus 로고
    • Adsorption of bifunctional organic disulfides on gold surfaces
    • Nuzzo, R. G.; Allara, D. L. Adsorption of bifunctional organic disulfides on gold surfaces J. Am. Chem. Soc. 1983, 105, 4481-4483
    • (1983) J. Am. Chem. Soc. , vol.105 , pp. 4481-4483
    • Nuzzo, R.G.1    Allara, D.L.2
  • 29
    • 24344485204 scopus 로고    scopus 로고
    • Melting temperatures of nucleic acids: Discrepancies in analysis
    • Owczarzy, R. Melting temperatures of nucleic acids: Discrepancies in analysis Biophys. Chem. 2005, 117, 207-215
    • (2005) Biophys. Chem. , vol.117 , pp. 207-215
    • Owczarzy, R.1
  • 30
    • 23944514975 scopus 로고    scopus 로고
    • Label-free characterisation of oligonucleotide hybridisation using reflectometric interference spectroscopy
    • Proll, F.; Mohrle, B.; Kumpf, M.; Gauglitz, G. Label-free characterisation of oligonucleotide hybridisation using reflectometric interference spectroscopy Anal. Bioanal. Chem. 2005, 382, 1889-1894
    • (2005) Anal. Bioanal. Chem. , vol.382 , pp. 1889-1894
    • Proll, F.1    Mohrle, B.2    Kumpf, M.3    Gauglitz, G.4
  • 31
    • 0021305622 scopus 로고
    • Slow relaxational processes in the melting of linear biopolymers: A theory and its application to nucleic acids
    • Anshelevich, V. V.; Vologodskii, A. V.; Lukashin, A. V.; Frank-Kamenetskii, M. D. Slow relaxational processes in the melting of linear biopolymers: a theory and its application to nucleic acids Biopolymers 1984, 23, 39-58
    • (1984) Biopolymers , vol.23 , pp. 39-58
    • Anshelevich, V.V.1    Vologodskii, A.V.2    Lukashin, A.V.3    Frank-Kamenetskii, M.D.4
  • 32
    • 0002459355 scopus 로고
    • Thermal denaturation of DNA molecules: A comparison of theory with experiment
    • Wartell, R. M.; Benight, A. S. Thermal denaturation of DNA molecules: A comparison of theory with experiment Phys. Rep. 1985, 126, 67-107
    • (1985) Phys. Rep. , vol.126 , pp. 67-107
    • Wartell, R.M.1    Benight, A.S.2
  • 33
    • 0034663496 scopus 로고    scopus 로고
    • Survey and summary: From DNA biosensors to gene chips
    • Wang, J. Survey and summary: From DNA biosensors to gene chips Nucleic Acids Res. 2000, 28, 3011-3016
    • (2000) Nucleic Acids Res. , vol.28 , pp. 3011-3016
    • Wang, J.1
  • 35
    • 0029996180 scopus 로고    scopus 로고
    • Solution structure of a peptide nucleic acid-DNA duplex
    • Eriksson, M.; Nielsen, P. E. Solution structure of a peptide nucleic acid-DNA duplex Nat. Struct. Biol. 1996, 3, 410-413
    • (1996) Nat. Struct. Biol. , vol.3 , pp. 410-413
    • Eriksson, M.1    Nielsen, P.E.2
  • 36
    • 79958080423 scopus 로고    scopus 로고
    • Thermodynamics of DNA hybridization on surfaces
    • Schmitt, T. J.; Knotts, T. A. Thermodynamics of DNA hybridization on surfaces J. Chem. Phys. 2011, 134, 205105-205109
    • (2011) J. Chem. Phys. , vol.134 , pp. 205105-205109
    • Schmitt, T.J.1    Knotts, T.A.2
  • 37
    • 77949330200 scopus 로고    scopus 로고
    • Physical properties of water near a gold surface: A nanorheological analysis
    • Soares, D. M.; Tenan, M. A.; Gomide, A. B.; Gomes, W. E. Physical properties of water near a gold surface: a nanorheological analysis ChemPhysChem 2010, 11, 905-911
    • (2010) ChemPhysChem , vol.11 , pp. 905-911
    • Soares, D.M.1    Tenan, M.A.2    Gomide, A.B.3    Gomes, W.E.4
  • 38
    • 50849148584 scopus 로고
    • The hydrophilic nature of a clean gold surface
    • Smith, T. The hydrophilic nature of a clean gold surface J. Colloid Interface Sci. 1980, 75, 51-55
    • (1980) J. Colloid Interface Sci. , vol.75 , pp. 51-55
    • Smith, T.1
  • 41
    • 0016656309 scopus 로고
    • Calorimetric and spectroscopic investigation of the helix-to-coil transition of a ribo-oligonucleotide: RA7U7
    • Breslauer, K. J.; Sturtevant, J. M.; Tinoco, I. Calorimetric and spectroscopic investigation of the helix-to-coil transition of a ribo-oligonucleotide: rA7U7 J. Mol. Biol. 1975, 99, 549-565
    • (1975) J. Mol. Biol. , vol.99 , pp. 549-565
    • Breslauer, K.J.1    Sturtevant, J.M.2    Tinoco, I.3
  • 42
    • 1542303744 scopus 로고    scopus 로고
    • Analysis of thermal melting curves
    • Mergny, J. L.; Lacroix, L. Analysis of thermal melting curves Oligonucleotides 2003, 13, 515-537
    • (2003) Oligonucleotides , vol.13 , pp. 515-537
    • Mergny, J.L.1    Lacroix, L.2
  • 43
    • 0034820744 scopus 로고    scopus 로고
    • MD simulations of homomorphous PNA, DNA, and RNA single strands: Characterization and comparison of conformations and dynamics
    • Sen, S.; Nilsson, L. MD simulations of homomorphous PNA, DNA, and RNA single strands: characterization and comparison of conformations and dynamics J. Am. Chem. Soc. 2001, 123, 7414-7422
    • (2001) J. Am. Chem. Soc. , vol.123 , pp. 7414-7422
    • Sen, S.1    Nilsson, L.2
  • 45
    • 0001221509 scopus 로고
    • The effect of electrolytes on the stability of the deoxyribonucleate helix
    • Hamaguchi, K.; Geiduschek, E. P. The effect of electrolytes on the stability of the deoxyribonucleate helix J. Am. Chem. Soc. 1962, 84, 1329-1338
    • (1962) J. Am. Chem. Soc. , vol.84 , pp. 1329-1338
    • Hamaguchi, K.1    Geiduschek, E.P.2
  • 46
    • 0022147096 scopus 로고
    • The Hofmeister effect and the behaviour of water at interfaces
    • Collins, K. D.; Washabaugh, M. D. The Hofmeister effect and the behaviour of water at interfaces Q. Rev. Biophys. 1985, 18, 323-422
    • (1985) Q. Rev. Biophys. , vol.18 , pp. 323-422
    • Collins, K.D.1    Washabaugh, M.D.2
  • 47
    • 0021755248 scopus 로고
    • Mechanism of protein salting in and salting out by divalent cation salts: Balance between hydration and salt binding
    • Arakawa, T.; Timasheff, S. N. Mechanism of protein salting in and salting out by divalent cation salts: balance between hydration and salt binding Biochemistry 1984, 23, 5912-5923
    • (1984) Biochemistry , vol.23 , pp. 5912-5923
    • Arakawa, T.1    Timasheff, S.N.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.