Mapping local laboratory interface terms to LOINC at a German university hospital using RELMA V.5: A semi-automated approach

Journal of the American Medical Informatics Association

Volumn 20, Issue 2, 2013, Pages 293-297

  Zunner, Christian ^a   Bürkle, Thomas ^a   Prokosch, Hans Ulrich ^a,b   Ganslandt, Thomas ^b  

^a UNIVERSITY OF ERLANGEN NUREMBERG   (Germany)

^b UNIVERSITY HOSPITAL ERLANGEN   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

CREATININE;

ARTICLE; CREATININE BLOOD LEVEL; ELECTRONIC MEDICAL RECORD; GERMANY; LABORATORY; LABORATORY AUTOMATION; PHYSICIAN; UNIVERSITY HOSPITAL;

AUTOMATION; BIOMEDICAL RESEARCH; CLINICAL LABORATORY INFORMATION SYSTEMS; ELECTRONIC HEALTH RECORDS; GERMANY; HUMANS; INFORMATION DISSEMINATION; LOGICAL OBSERVATION IDENTIFIERS NAMES AND CODES; SYSTEMS INTEGRATION; USER-COMPUTER INTERFACE;

EID: 84874789387     PISSN: 10675027     EISSN: 1527974X     Source Type: Journal    
DOI: 10.1136/amiajnl-2012-001063     Document Type: Article

References (43)

1. Herzberg S, Dugas M. Single source information systems can improve data completeness in clinical studies: an example from nuclear medicine. Stud Health Technol Inform 2011;169:872-6.
2. El Fadly A, Rance B, Lucas N, et al. Integrating clinical research with the healthcare enterprise: from the RE-USE project to the EHR4CR platform. J Biomed Inform 2011;44(Suppl 1):S94-102.
3. Fritz F, Ständer S, Breil B, et al. CIS-based registration of quality of life in a single source approach. BMC Med Inform Decis Mak 2011;11:26.
4. Fritz F, Balhorn S, Riek M, et al. Qualitative and quantitative evaluation of EHR-integrated mobile patient questionnaires regarding usability andcost-efficiency. J Biomed Inform 2012;81:303-13.
5. Ganslandt T, Prokosch HU, Beyer A, et al. Single-source-projekte am universitätsklinikum Erlangen. Forum der Medizin_Dokumentation und Medizin_Informatik 2010;2:62-6.
6. Prokosch HU, Ries M, Beyer A, et al. IT infrastructure components to support clinical care and translational research projects in a comprehensive cancer center. Stud Health Technol Inform 2011;169:892-6.
7. Hu H, Correll M, Kvecher L, et al. DW4TR: a data warehouse for translational research. J Biomed Inform 2011;44:1004-19.
8. Cuggia M, Garcelon N, Campillo-Gimenez B, et al. Roogle: an information retrieval engine for clinical data warehouse. Stud Health Technol Inform 2011;169:584-8.
9. McDonald CJ. The barriers to electronic medical record systems and how to overcome them. J Am Med Inform Assoc 1997;4:213-21.
10. Cimino JJ. Desiderata for controlled medical vocabularies in the twenty-first century. Methods Inf Med 1998;37:394-403.
11. Nagy M, Hanzlicek P, Precková P, et al. Semantic interoperability in Czech healthcare environment supported by HL7 version 3. Methods Inf Med 2010;49:186-95.
12. Scott P, Worden R. Semantic mapping to simplify deployment of HL7 v3 Clinical document Architecture. J Biomed Inform. Published Online First: 24 March 2012. doi:10.1016/j.jbi.2012.02.006
13. Berges I, Bermudez J, Illarramendi A. Towards semantic interoperability of electronic health records. IEEE Trans Inf Technol Biomed. Published Online First: 30 December 2011. doi:10.1109/TITB.2011.2180917
14. Emons MF. Integrated patient data for optimal patient management: the value of laboratory data in quality improvement. Clin Chem 2001;47:1516-20.
15. McDonald CJ, Overhage JM, Tierney WM, et al. The regenstrief medical record system: a quarter century experience. Int J Med Inform 1999;54:225-53.
16. Reichert JC, Glasgow M, Naru SP, et al. Using LOINC to link an EMR to the pertinent paragraph in a structured reference knowledge base. Proc AMIA Symp 2002;2002:652-6.
17. Wurtz R, Cameron BJ. Electronic laboratory reporting for the infectious diseases physician and clinical microbiologist. Clin Infect Dis 2005;40:1638-43.
18. Forrey AW, McDonald CJ, DeMoor G, et al. Logical observation identifier names and codes (LOINC) database: a public use set of codes and names for electronic reporting of clinical laboratory test results. Clin Chem 1996;42:81-90.
19. Kroth PJ, Daneshvari S, Harris EF, et al. Using LOINC to link 10 terminology standards to one unified standard in a specialized domain. J Biomed Inform. Published Online First: 19 October 2011. doi:10.1016/j.jbi.2011.10.003
20. Vreeman DJ, Chiaravalloti MT, Hook J, et al. Enabling international adoption of LOINC through translation. J Biomed Inform. Published Online First: 21 January 2012. doi:10.1016/j.jbi.2012.01.005
21. Huff SM, Rocha RA, McDonald CJ, et al. Development of the logical observation identifier names and codes (LOINC) vocabulary. J Am Med Inform Assoc 1998;5:276-92.
22. McDonald CJ, Huff SM, Suico JG, et al. LOINC, a universal standard for identifying laboratory observations: a 5-year update. Clin Chem 2003;49:624-33.
23. Cimino JJ, Zhu X. The practical impact of ontologies on biomedical informatics. Yearb Med Inform 2006;2006:124-35.
24. Abhyankar S, Lloyd-Puryear MA, Goodwin R, et al. Standardizing newborn screening results for health information exchange. AMIA Annu Symp Proc 2010;2010:1-5.
25. Ahmadian L, Engen-Verheul M, Bakhshi-Raiez F, et al. The role of standardized data and terminological systems in computerized clinical decision support systems: literature review and survey. Int J Med Inform 2011;80:81-93.
26. Bonney W. Is it appropriate, or ethical, to use health data collected for the purpose of direct patient care to develop computerized predictive decision support tools? Stud Health Technol Inform 2009;143:115-21.
27. Srinivasan A, Kunapareddy N, Mirhaji P, et al. Semantic web representation of LOINC: an ontological perspective. AMIA Annu Symp Proc 2006;2006:1107.
28. Bodenreider O. Biomedical ontologies in action: role in knowledge management, data integration and decision support. Yearb Med Inform 2008;2008:67-79.
29. Lin MC, Vreeman DJ, Huff SM, et al. Investigating the semantic interoperability of laboratory data exchanged using LOINC codes in three large institutions. AMIA Annu Symp Proc 2011;2011:805-14.
30. Lin MC, Vreeman DJ, McDonald CJ, et al. Auditing consistency and usefulness of LOINC use among three large institutions eUsing version spaces for grouping LOINC codes. J Biomed Inform. Published Online First: 28 January 2012. doi:10.1016/j.jbi.2012.01.008
31. Lin MC, Vreeman DJ, McDonald CJ, et al. A characterization of local LOINC mapping for laboratory tests in three large institutions. Methods Inf Med 2011;50:105-14.
32. Lin MC, Vreeman DJ, McDonald CJ, et al. Correctness of voluntary LOINC mapping for laboratory tests in three large institutions. AMIA Annu Symp Proc 2011;2011:447-51.
33. Khan AN, Russel D, Moore C, et al. The map to LOINC project. AMIA Annu Symp Proc 2003;2003:890.
34. Khan AN, Griffith SP, Moore C, et al. Standardizing laboratory data by mapping to LOINC. J Am Med Inform Assoc 2006;13:353-5.
35. Baorto DM, Cimino JJ, Parvin CA, et al. Using logical observation identifier names and codes (LOINC) toelaboratory data among three academic hospitals. Proc AMIA Annu Fall Symp 1997;1997:96-100.
36. Baorto DM, Cimino JJ, Parvin CA, et al. Combining laboratory data sets from multiple institutions using the logical observation identifier names and codes (LOINC). Int J Med Inform 1998;51:29-37.
37. Lau LM, Johnson K, Monson K, et al. A method for the automated mapping of laboratory results to LOINC. Proc AMIA Symp 2003;2003:472-6.
38. Lau LM, Johnson K, Monson K, et al. Mapping department of defense laboratory results to logical observation identifiers names and codes (LOINC). AMIA Annu Symp Proc 2005;2005:430-4.
39. http://loinc.org/international (accessed 16 Apr 2012).
40. McDonald CJ, Huff SM, Mercer K, et al. LOINC User's Guide. Indianapolis, IN: Regenstrief Institute, 2011.
41. http://www.tmf-ev.de/DesktopModules/Bring2mind/DMX/Download.aspx?Method1/4attachment&Command1/4Core_Download&EntryId1/43270&PortalId1/40(accessed 16 Apr 2012)
42. http://www.dimdi.de/static/de/klassi/loinc/index.htm (accessed 16 Apr 2012).
43. http://www.dimdi.de/static/de/klassi/aktuelles/news_0259.htm_319159480.htm(accessed 16 Apr 2012)