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Volumn 8, Issue 3, 2013, Pages

Canalization and Control in Automata Networks: Body Segmentation in Drosophila melanogaster

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ARTICLE; DROSOPHILA MELANOGASTER; GENETIC REGULATION; MATHEMATICAL MODEL; NONHUMAN; QUANTITATIVE ANALYSIS; SIGNAL TRANSDUCTION; WILD TYPE;

EID: 84874767199     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0055946     Document Type: Article
Times cited : (50)

References (64)
  • 1
    • 51149203927 scopus 로고
    • Canalization of development and the inheritance of acquired characters
    • Waddington CH, (1942) Canalization of development and the inheritance of acquired characters. Nature 150: 563-565.
    • (1942) Nature , vol.150 , pp. 563-565
    • Waddington, C.H.1
  • 3
    • 0025316459 scopus 로고
    • The geometry of evolution
    • Conrad M, (1990) The geometry of evolution. BioSystems 24: 61-81.
    • (1990) BioSystems , vol.24 , pp. 61-81
    • Conrad, M.1
  • 4
    • 77649168145 scopus 로고    scopus 로고
    • The quantitative genetics of phenotypic robustness
    • Fraser HB, Schadt EE, (2010) The quantitative genetics of phenotypic robustness. PLoS One 5: e8635.
    • (2010) PLoS One , vol.5
    • Fraser, H.B.1    Schadt, E.E.2
  • 5
    • 67651180919 scopus 로고    scopus 로고
    • The role of genome and gene regulatory network canalization in the evolution of multi-trait polymorphisms and sympatric speciation
    • Tusscher KHWJ, Hogeweg P, (2009) The role of genome and gene regulatory network canalization in the evolution of multi-trait polymorphisms and sympatric speciation. BMC Evol Biol 9: 159.
    • (2009) BMC Evol Biol , vol.9 , pp. 159
    • Tusscher, K.H.W.J.1    Hogeweg, P.2
  • 6
    • 58549096683 scopus 로고    scopus 로고
    • Decanalization and the origin of complex disease
    • Gibbon G, (2009) Decanalization and the origin of complex disease. Nature Reviews Genetics 10: 134-140.
    • (2009) Nature Reviews Genetics , vol.10 , pp. 134-140
    • Gibbon, G.1
  • 7
    • 56849091295 scopus 로고    scopus 로고
    • Network hubs buffer environmental variation in saccharomyces cerevisiae
    • Levy SF, Siegal ML, (2008) Network hubs buffer environmental variation in saccharomyces cerevisiae. PLoS Biol 6: e264.
    • (2008) PLoS Biol , vol.6
    • Levy, S.F.1    Siegal, M.L.2
  • 8
    • 33846202481 scopus 로고    scopus 로고
    • Mutations leading to loss of sporulation ability in bacillus subtilis are sufficiently frequent to favor genetic canalization
    • Masel J, Maughan H, (2007) Mutations leading to loss of sporulation ability in bacillus subtilis are sufficiently frequent to favor genetic canalization. Genetics 175: 453-7.
    • (2007) Genetics , vol.175 , pp. 453-457
    • Masel, J.1    Maughan, H.2
  • 9
    • 0042154192 scopus 로고    scopus 로고
    • Evolutionary capacitance as a general feature of complex gene networks
    • Bergman A, Siegal ML, (2003) Evolutionary capacitance as a general feature of complex gene networks. Nature 424: 549-52.
    • (2003) Nature , vol.424 , pp. 549-552
    • Bergman, A.1    Siegal, M.L.2
  • 10
    • 0036678862 scopus 로고    scopus 로고
    • Waddington's canalization revisited: Developmental stability and evolution
    • Siegal M, Bergman A, (2002) Waddington's canalization revisited: Developmental stability and evolution. PNAS 99: 10528-10532.
    • (2002) PNAS , vol.99 , pp. 10528-10532
    • Siegal, M.1    Bergman, A.2
  • 11
  • 12
    • 0020495096 scopus 로고
    • Emergent properties in random complex automata
    • Kauffman S, (1984) Emergent properties in random complex automata. Physica D 10: 145-156.
    • (1984) Physica D , vol.10 , pp. 145-156
    • Kauffman, S.1
  • 13
    • 85040473565 scopus 로고    scopus 로고
    • A model of transcriptional regulatory networks based on biases in the observed regulation rules
    • Harris S, Sawhill B, Wuensche A, Kauffman S, (2002) A model of transcriptional regulatory networks based on biases in the observed regulation rules. Complexity 7: 23-40.
    • (2002) Complexity , vol.7 , pp. 23-40
    • Harris, S.1    Sawhill, B.2    Wuensche, A.3    Kauffman, S.4
  • 14
    • 0345598902 scopus 로고    scopus 로고
    • Random boolean network models and the yeast transcriptional network
    • Kauffman S, Peterson C, Samuelsson B, Troein C, (2003) Random boolean network models and the yeast transcriptional network. PNAS 100: 14796-14799.
    • (2003) PNAS , vol.100 , pp. 14796-14799
    • Kauffman, S.1    Peterson, C.2    Samuelsson, B.3    Troein, C.4
  • 15
    • 10344259662 scopus 로고    scopus 로고
    • Genetic networks with canalyzing boolean rules are always stable
    • Kauffman S, Peterson C, Samuelsson B, Troein C (2004) Genetic networks with canalyzing boolean rules are always stable. PNAS.
    • (2004) PNAS
    • Kauffman, S.1    Peterson, C.2    Samuelsson, B.3    Troein, C.4
  • 16
    • 33646013298 scopus 로고    scopus 로고
    • An analysis of the class of gene regulatory functions implied by a biochemical model
    • Grefenstette J, Kim S, Kauffman S (2006) An analysis of the class of gene regulatory functions implied by a biochemical model. BioSystems.
    • (2006) BioSystems
    • Grefenstette, J.1    Kim, S.2    Kauffman, S.3
  • 17
    • 0036400724 scopus 로고    scopus 로고
    • Dynamics of boolean networks controlled by biologically meaningful functions
    • Raeymaekers L, (2002) Dynamics of boolean networks controlled by biologically meaningful functions. Journal of Theoretical Biology 218: 331-41.
    • (2002) Journal of Theoretical Biology , vol.218 , pp. 331-341
    • Raeymaekers, L.1
  • 18
    • 56349111495 scopus 로고    scopus 로고
    • Canalization and symmetry in boolean models for genetic regulatory networks
    • Reichhardt CJO, Bassler K, (2007) Canalization and symmetry in boolean models for genetic regulatory networks. Physica A 40: 4339-4350.
    • (2007) Physica A , vol.40 , pp. 4339-4350
    • Reichhardt, C.J.O.1    Bassler, K.2
  • 19
    • 0141480040 scopus 로고    scopus 로고
    • The role of certain post classes in boolean network models of genetic networks
    • Shmulevich I, Lähdesmäli H, Dougherty E, Jaakko A, Zhang W, (2003) The role of certain post classes in boolean network models of genetic networks. PNAS 100: 10734-10739.
    • (2003) PNAS , vol.100 , pp. 10734-10739
    • Shmulevich, I.1    Lähdesmäli, H.2    Dougherty, E.3    Jaakko, A.4    Zhang, W.5
  • 20
    • 3242882981 scopus 로고    scopus 로고
    • Chain functions and scoring functions in genetic networks
    • Gat-Viks I, Shamir R, (2003) Chain functions and scoring functions in genetic networks. Bioinformatics 19Suppl 1: i108-17.
    • (2003) Bioinformatics , vol.19
    • Gat-Viks, I.1    Shamir, R.2
  • 22
    • 0014671878 scopus 로고
    • Homeostasis and differentiation in random genetic control networks
    • Kauffman S, (1969) Homeostasis and differentiation in random genetic control networks. Nature 224: 177-8.
    • (1969) Nature , vol.224 , pp. 177-178
    • Kauffman, S.1
  • 24
    • 0015823097 scopus 로고
    • Boolean formalization of genetic control circuits
    • Thomas R, (1973) Boolean formalization of genetic control circuits. J Theor Biol 42: 563-85.
    • (1973) J Theor Biol , vol.42 , pp. 563-585
    • Thomas, R.1
  • 25
    • 0029267491 scopus 로고
    • Dynamical behaviour of biological regulatory networks-i. biological role of feedback loops and practical use of the concept of the loop-characteristic state
    • Thomas R, Thieffry D, Kaufman M, (1995) Dynamical behaviour of biological regulatory networks-i. biological role of feedback loops and practical use of the concept of the loop-characteristic state. Bull Math Biol 57: 247-76.
    • (1995) Bull Math Biol , vol.57 , pp. 247-276
    • Thomas, R.1    Thieffry, D.2    Kaufman, M.3
  • 26
    • 0037686112 scopus 로고    scopus 로고
    • The topology of the regulatory interactions predicts the expression pattern of the segment polarity genes in drosophila melanogaster
    • Albert R, Othmer H, (2003) The topology of the regulatory interactions predicts the expression pattern of the segment polarity genes in drosophila melanogaster. J Theor Biol 223: 1-18.
    • (2003) J Theor Biol , vol.223 , pp. 1-18
    • Albert, R.1    Othmer, H.2
  • 29
    • 0027033038 scopus 로고
    • The molecular genetic basis of positional information in insect segments
    • In: Hennig W, editor, Springer Verlag
    • Hooper J, Scott M (1992) The molecular genetic basis of positional information in insect segments. In: Hennig W, editor, Early Embrionic Development of Animals, Springer Verlag. 1-48.
    • (1992) Early Embrionic Development of Animals , pp. 1-48
    • Hooper, J.1    Scott, M.2
  • 30
    • 0034644270 scopus 로고    scopus 로고
    • The segment polarity network is a robust developmental module
    • von Dassow G, Meir E, Munro EM, Odell G, (2000) The segment polarity network is a robust developmental module. Nature 406: 188-192.
    • (2000) Nature , vol.406 , pp. 188-192
    • von Dassow, G.1    Meir, E.2    Munro, E.M.3    Odell, G.4
  • 31
    • 0037108607 scopus 로고    scopus 로고
    • Design and constraints of the Drosophila segment polarity module: Robust spatial patterning emerges from intertwined cell state switches
    • von Dassow G, Odell G, (2002) Design and constraints of the Drosophila segment polarity module: Robust spatial patterning emerges from intertwined cell state switches. Journal of Experimental Zoology 294: 179-215.
    • (2002) Journal of Experimental Zoology , vol.294 , pp. 179-215
    • von Dassow, G.1    Odell, G.2
  • 32
    • 33847650979 scopus 로고    scopus 로고
    • Robustness and evolvability in genetic regulatory networks
    • Aldana M, Balleza E, Kauffman S, Resendiz O, (2007) Robustness and evolvability in genetic regulatory networks. J Theor Biol 245: 433-48.
    • (2007) J Theor Biol , vol.245 , pp. 433-448
    • Aldana, M.1    Balleza, E.2    Kauffman, S.3    Resendiz, O.4
  • 33
    • 46249112705 scopus 로고    scopus 로고
    • Boolean network models of cellular regulation: prospects and limitations
    • Bornholdt S, (2008) Boolean network models of cellular regulation: prospects and limitations. J R Soc Interface 5Suppl 1: S85-94.
    • (2008) J R Soc Interface , vol.5
    • Bornholdt, S.1
  • 34
    • 62549143473 scopus 로고    scopus 로고
    • Logical analysis of the budding yeast cell cycle
    • Irons DJ, (2009) Logical analysis of the budding yeast cell cycle. J Theor Biol 257: 543-59.
    • (2009) J Theor Biol , vol.257 , pp. 543-559
    • Irons, D.J.1
  • 35
  • 36
    • 77149160061 scopus 로고    scopus 로고
    • Computing combinatorial intervention strategies and failure modes in signaling networks
    • Samaga R, Von Kamp A, Klamt S, (2010) Computing combinatorial intervention strategies and failure modes in signaling networks. J Comput Biol 17: 39-53.
    • (2010) J Comput Biol , vol.17 , pp. 39-53
    • Samaga, R.1    Von Kamp, A.2    Klamt, S.3
  • 37
    • 73949091600 scopus 로고    scopus 로고
    • Discrete dynamic modeling with asynchronous update
    • Assmann SM, Albert R, (2009) Discrete dynamic modeling with asynchronous update. Methods in molecular biology 553: 207-225.
    • (2009) Methods in Molecular Biology , vol.553 , pp. 207-225
    • Assmann, S.M.1    Albert, R.2
  • 38
    • 18844380444 scopus 로고    scopus 로고
    • Robustness and fragility of boolean models for genetic regulatory networks
    • Chaves M, Albert R, Sontag ED, (2005) Robustness and fragility of boolean models for genetic regulatory networks. J Theor Biol 235: 431-449.
    • (2005) J Theor Biol , vol.235 , pp. 431-449
    • Chaves, M.1    Albert, R.2    Sontag, E.D.3
  • 39
    • 80051635139 scopus 로고    scopus 로고
    • Schema redescription in cellular automata: Revisiting emergence in complex systems
    • doi:10.1109/ALIFE.2011.5954670
    • Marques-Pita M, Rocha LM (2011) Schema redescription in cellular automata: Revisiting emergence in complex systems. In: Artificial Life (ALIFE), 2011 IEEE Symposium on. 233-240. doi:10.1109/ALIFE.2011.5954670.
    • (2011) Artificial Life (ALIFE), 2011 IEEE Symposium on , pp. 233-240
    • Marques-Pita, M.1    Rocha, L.M.2
  • 48
    • 84932847893 scopus 로고
    • A symbolic analysis of relay and switching circuits
    • Shannon CE, (1938) A symbolic analysis of relay and switching circuits. AIEE Trans 57: 713-723.
    • (1938) AIEE Trans , vol.57 , pp. 713-723
    • Shannon, C.E.1
  • 49
    • 84926299170 scopus 로고
    • Detection of group invariance or total symmetry of a boolean function
    • McCluskey E, (1956) Detection of group invariance or total symmetry of a boolean function. Bell System Technical Journal 35: 1445-1453.
    • (1956) Bell System Technical Journal , vol.35 , pp. 1445-1453
    • McCluskey, E.1
  • 51
    • 51249194645 scopus 로고
    • A logical calculus of ideas immanent in nervous activity
    • McCulloch W, Pitts W, (1943) A logical calculus of ideas immanent in nervous activity. Bulletin of Mathematical Biophysics 5: 115-133.
    • (1943) Bulletin of Mathematical Biophysics , vol.5 , pp. 115-133
    • McCulloch, W.1    Pitts, W.2
  • 52
    • 36248985686 scopus 로고    scopus 로고
    • Robustness and state-space structure of boolean gene regulatory models
    • Willadsen K, Wiles J, (2007) Robustness and state-space structure of boolean gene regulatory models. J Theor Biol 249: 749-765.
    • (2007) J Theor Biol , vol.249 , pp. 749-765
    • Willadsen, K.1    Wiles, J.2
  • 53
    • 33751161034 scopus 로고    scopus 로고
    • Complex systems: Network thinking
    • Mitchell M, (2006) Complex systems: Network thinking. Artificial Intelligence 170: 1194-1212.
    • (2006) Artificial Intelligence , vol.170 , pp. 1194-1212
    • Mitchell, M.1
  • 54
    • 0742270971 scopus 로고    scopus 로고
    • Evidence for complex, collective dynamics and distributed emergent computation in plants
    • Peak D, West JD, Messinger SM, Mott KA, (2004) Evidence for complex, collective dynamics and distributed emergent computation in plants. PNAS 101: 918-922.
    • (2004) PNAS , vol.101 , pp. 918-922
    • Peak, D.1    West, J.D.2    Messinger, S.M.3    Mott, K.A.4
  • 55
    • 0028786664 scopus 로고
    • The evolution of emergent computation
    • Crutchfield J, Mitchell M, (1995) The evolution of emergent computation. PNAS 92: 10742-10746.
    • (1995) PNAS , vol.92 , pp. 10742-10746
    • Crutchfield, J.1    Mitchell, M.2
  • 56
    • 15444379171 scopus 로고    scopus 로고
    • Material representations: From the genetic code to the evolution of cellular automata
    • Rocha LM, Hordijk W, (2005) Material representations: From the genetic code to the evolution of cellular automata. Artificial Life 11: 189-214.
    • (2005) Artificial Life , vol.11 , pp. 189-214
    • Rocha, L.M.1    Hordijk, W.2
  • 57
    • 0032077377 scopus 로고    scopus 로고
    • From specific gene regulation to genomic networks: a global analysis of transcriptional regulation in escherichia coli
    • Thieffry D, Huerta AM, Pérez-Rueda E, Collado-Vides J, (1998) From specific gene regulation to genomic networks: a global analysis of transcriptional regulation in escherichia coli. Bioessays 20: 433-40.
    • (1998) Bioessays , vol.20 , pp. 433-440
    • Thieffry, D.1    Huerta, A.M.2    Pérez-Rueda, E.3    Collado-Vides, J.4
  • 58
    • 70350452758 scopus 로고    scopus 로고
    • Understanding modularity in molecular networks requires dynamics
    • pe44
    • Alexander RP, Kim PM, Emonet T, Gerstein MB (2009) Understanding modularity in molecular networks requires dynamics. Sci Signal 2: pe44-.
    • (2009) Sci Signal , vol.2
    • Alexander, R.P.1    Kim, P.M.2    Emonet, T.3    Gerstein, M.B.4
  • 60
    • 1642282826 scopus 로고    scopus 로고
    • Patterned gene expression directs bipolar planar polarity in Drosophila
    • Zallen JA, Wieschaus E, (2004) Patterned gene expression directs bipolar planar polarity in Drosophila. Developmental Cell 6: 343-355.
    • (2004) Developmental Cell , vol.6 , pp. 343-355
    • Zallen, J.A.1    Wieschaus, E.2
  • 61
    • 77956833613 scopus 로고    scopus 로고
    • Cell cycle regulation via inter-nuclear communication during the early embryonic development of Drosophila melanogaster
    • Lu X, Drocco J, Wieschaus EF, (2010) Cell cycle regulation via inter-nuclear communication during the early embryonic development of Drosophila melanogaster. Cell cycle (Georgetown, Tex) 9: 2908-2910.
    • (2010) Cell Cycle (Georgetown, Tex) , vol.9 , pp. 2908-2910
    • Lu, X.1    Drocco, J.2    Wieschaus, E.F.3
  • 64
    • 41149165188 scopus 로고    scopus 로고
    • Emergent decision-making in biological signal transduction networks
    • Helikar T, Konvalina J, Heidel J, Rogers JA, (2008) Emergent decision-making in biological signal transduction networks. PNAS 105: 1913-1918.
    • (2008) PNAS , vol.105 , pp. 1913-1918
    • Helikar, T.1    Konvalina, J.2    Heidel, J.3    Rogers, J.A.4


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