메뉴 건너뛰기




Volumn 84, Issue 2, 2006, Pages 81-90

An analysis of the class of gene regulatory functions implied by a biochemical model

Author keywords

Boolean network model; Gene regulatory networks; Monotonic regulatory functions

Indexed keywords

DIMER;

EID: 33646013298     PISSN: 03032647     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.biosystems.2005.09.009     Document Type: Article
Times cited : (21)

References (26)
  • 2
    • 0038513959 scopus 로고    scopus 로고
    • Scale-free networks
    • Barabasi A.L., and Bonabeau E. Scale-free networks. Sci. Am. 288 5 (2003) 60-69
    • (2003) Sci. Am. , vol.288 , Issue.5 , pp. 60-69
    • Barabasi, A.L.1    Bonabeau, E.2
  • 3
    • 0033736476 scopus 로고    scopus 로고
    • Genetic network inference: from co-expression clustering to reverse engineering
    • D'Haeseleer P., Liang S., and Somogyi R. Genetic network inference: from co-expression clustering to reverse engineering. Bioinformatics 16 8 (2000) 707-726
    • (2000) Bioinformatics , vol.16 , Issue.8 , pp. 707-726
    • D'Haeseleer, P.1    Liang, S.2    Somogyi, R.3
  • 4
    • 22044438132 scopus 로고    scopus 로고
    • EXAMINE: a computational approach to reconstructing gene regulatory networks
    • Deng X., Geng H., and Ali H. EXAMINE: a computational approach to reconstructing gene regulatory networks. Biosystems 81 2 (2005) 125-136
    • (2005) Biosystems , vol.81 , Issue.2 , pp. 125-136
    • Deng, X.1    Geng, H.2    Ali, H.3
  • 5
    • 0025081214 scopus 로고
    • Transcription factor interactions: selectors of positive or negative regulation from a single DNA element
    • Diamond M.I., Miner J.N., Yoshinaga S.K., and Yamamoto K.R. Transcription factor interactions: selectors of positive or negative regulation from a single DNA element. Science 249 4974 (1990) 1266-1272
    • (1990) Science , vol.249 , Issue.4974 , pp. 1266-1272
    • Diamond, M.I.1    Miner, J.N.2    Yoshinaga, S.K.3    Yamamoto, K.R.4
  • 7
    • 0035650176 scopus 로고    scopus 로고
    • From topology to dynamics in biochemical networks
    • Fox J.J., and Hill C.C. From topology to dynamics in biochemical networks. Chaos 11 4 (2001) 809-815
    • (2001) Chaos , vol.11 , Issue.4 , pp. 809-815
    • Fox, J.J.1    Hill, C.C.2
  • 8
    • 3242882981 scopus 로고    scopus 로고
    • Chain functions and scoring functions in genetic networks
    • Gat-Viks I., and Shamir R. Chain functions and scoring functions in genetic networks. Bioinformatics 19 Suppl. 1 (2003) i108-i117
    • (2003) Bioinformatics , vol.19 , Issue.SUPPL. 1
    • Gat-Viks, I.1    Shamir, R.2
  • 9
    • 0015609281 scopus 로고
    • The logical analysis of continuous, non-linear biochemical control networks
    • Glass L., and Kauffman S.A. The logical analysis of continuous, non-linear biochemical control networks. J. Theor. Biol. 39 1 (1973) 103-129
    • (1973) J. Theor. Biol. , vol.39 , Issue.1 , pp. 103-129
    • Glass, L.1    Kauffman, S.A.2
  • 10
    • 0037447257 scopus 로고    scopus 로고
    • Assessing experimentally derived interactions in a small world
    • Goldberg D.S., and Roth F.P. Assessing experimentally derived interactions in a small world. Proc. Natl. Acad. Sci. U.S.A. 100 8 (2003) 4372-4376
    • (2003) Proc. Natl. Acad. Sci. U.S.A. , vol.100 , Issue.8 , pp. 4372-4376
    • Goldberg, D.S.1    Roth, F.P.2
  • 11
    • 85040473565 scopus 로고    scopus 로고
    • A model of transcriptional regulatory networks based on biases in the observed regulation rules
    • Harris S.E., Sawhill B.K., Wuensche A., and Kauffman S. A model of transcriptional regulatory networks based on biases in the observed regulation rules. Complexity 7 4 (2002) 23-40
    • (2002) Complexity , vol.7 , Issue.4 , pp. 23-40
    • Harris, S.E.1    Sawhill, B.K.2    Wuensche, A.3    Kauffman, S.4
  • 12
    • 0034045290 scopus 로고    scopus 로고
    • Toggles and oscillators: new genetic circuit designs
    • Judd E.M., Laub M.T., and McAdams H.H. Toggles and oscillators: new genetic circuit designs. Bioessays 22 6 (2000) 507-509
    • (2000) Bioessays , vol.22 , Issue.6 , pp. 507-509
    • Judd, E.M.1    Laub, M.T.2    McAdams, H.H.3
  • 13
  • 14
    • 0014671878 scopus 로고
    • Homeostasis and differentiation in random genetic control networks
    • Kauffman S.A. Homeostasis and differentiation in random genetic control networks. Nature 224 215 (1969) 177-178
    • (1969) Nature , vol.224 , Issue.215 , pp. 177-178
    • Kauffman, S.A.1
  • 15
    • 0014489272 scopus 로고
    • Metabolic stability and epigenesis in randomly constructed genetic nets
    • Kauffman S.A. Metabolic stability and epigenesis in randomly constructed genetic nets. J. Theor. Biol. 22 3 (1969) 437-467
    • (1969) J. Theor. Biol. , vol.22 , Issue.3 , pp. 437-467
    • Kauffman, S.A.1
  • 16
    • 0015171596 scopus 로고
    • Gene regulation networks: a theory for their global structure and behaviors
    • Kauffman S.A. Gene regulation networks: a theory for their global structure and behaviors. Curr. Top. Dev. Biol. 6 6 (1971) 145-182
    • (1971) Curr. Top. Dev. Biol. , vol.6 , Issue.6 , pp. 145-182
    • Kauffman, S.A.1
  • 19
    • 0031616241 scopus 로고    scopus 로고
    • Reveal, a general reverse engineering algorithm for inference of genetic network architectures
    • Liang S., Fuhrman S., and Somogyi R. Reveal, a general reverse engineering algorithm for inference of genetic network architectures. Pac. Symp. Biocomput. (1998) 18-29
    • (1998) Pac. Symp. Biocomput. , pp. 18-29
    • Liang, S.1    Fuhrman, S.2    Somogyi, R.3
  • 20
    • 0029028963 scopus 로고
    • Circuit simulation of genetic networks
    • McAdams H.H., and Shapiro L. Circuit simulation of genetic networks. Science 269 5224 (1995) 650-656
    • (1995) Science , vol.269 , Issue.5224 , pp. 650-656
    • McAdams, H.H.1    Shapiro, L.2
  • 21
    • 0032125697 scopus 로고    scopus 로고
    • Regulation of eosinophil-specific gene expression by a C/EBP-Ets complex and GATA-1
    • McNagny K.M., Sieweke M.H., Doderlein G., Graf T., and Nerlov C. Regulation of eosinophil-specific gene expression by a C/EBP-Ets complex and GATA-1. EMBO J. 17 13 (1998) 3669-3680
    • (1998) EMBO J. , vol.17 , Issue.13 , pp. 3669-3680
    • McNagny, K.M.1    Sieweke, M.H.2    Doderlein, G.3    Graf, T.4    Nerlov, C.5
  • 24
    • 85194540340 scopus 로고    scopus 로고
    • Sloane, N.J.A., 2005. The On-Line Encyclopedia of Integer Sequences, at http://www.research.att.com/∼njas/sequences/.
  • 25
    • 0031635563 scopus 로고    scopus 로고
    • Modeling the normal and neoplastic cell cycle with "realistic Boolean genetic networks": their application for understanding carcinogenesis and assessing therapeutic strategies
    • Szallasi Z., and Liang S. Modeling the normal and neoplastic cell cycle with "realistic Boolean genetic networks": their application for understanding carcinogenesis and assessing therapeutic strategies. Pac. Symp. Biocomput. (1998) 66-76
    • (1998) Pac. Symp. Biocomput. , pp. 66-76
    • Szallasi, Z.1    Liang, S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.