-
2
-
-
77956098333
-
Atomic structure of human adenovirus by cryo-EM reveals interactions among protein networks
-
Liu H, Jin L, Koh SBS, Atanasov I, Schein S, Wu L, Zhou ZH. 2010. Atomic structure of human adenovirus by cryo-EM reveals interactions among protein networks. Science 329:1038-1043.
-
(2010)
Science
, vol.329
, pp. 1038-1043
-
-
Liu, H.1
Jin, L.2
Koh, S.B.S.3
Atanasov, I.4
Schein, S.5
Wu, L.6
Zhou, Z.H.7
-
4
-
-
79954650563
-
State-of-the-art gene-based therapies: the road ahead
-
Kay MA. 2011. State-of-the-art gene-based therapies: the road ahead. Nat. Rev. Genet. 12:316 -328.
-
(2011)
Nat. Rev. Genet
, vol.12
-
-
Kay, M.A.1
-
5
-
-
0031691062
-
Interactions of soluble recombinant integrin αvβ5 with human adenoviruses
-
Mathias P, Galleno M, Nemerow GR. 1998. Interactions of soluble recombinant integrin αvβ5 with human adenoviruses. J. Virol. 72:8669-8675.
-
(1998)
J. Virol
, vol.72
, pp. 8669-8675
-
-
Mathias, P.1
Galleno, M.2
Nemerow, G.R.3
-
6
-
-
36049006185
-
Cell integrins: commonly used receptors for diverse viral pathogens
-
Stewart PL, Nemerow GR. 2007. Cell integrins: commonly used receptors for diverse viral pathogens. Trends Microbiol. 15:500 -507.
-
(2007)
Trends Microbiol
, vol.15
-
-
Stewart, P.L.1
Nemerow, G.R.2
-
7
-
-
0027166647
-
Integrins α(v)β3 and α(v) β5 promote adenovirus internalization but not virus attachment
-
Wickham TJ, Mathias P, Cheresh DA, Nemerow GR. 1993. Integrins α(v)β3 and α(v) β5 promote adenovirus internalization but not virus attachment. Cell 73:309 -319.
-
(1993)
Cell
, vol.73
, pp. 309-319
-
-
Wickham, T.J.1
Mathias, P.2
Cheresh, D.A.3
Nemerow, G.R.4
-
8
-
-
70350322305
-
Cryo-electron microscopy structure of an adenovirus-integrin complex indicates conformational changes in both penton base and integrin
-
Lindert S, Silvestry M, Mullen TM, Nemerow GR, Stewart PL. 2009. Cryo-electron microscopy structure of an adenovirus-integrin complex indicates conformational changes in both penton base and integrin. J. Virol. 83:11491-11501.
-
(2009)
J. Virol.
, vol.83
, pp. 11491-11501
-
-
Lindert, S.1
Silvestry, M.2
Mullen, T.M.3
Nemerow, G.R.4
Stewart, P.L.5
-
9
-
-
0032798213
-
Structure of adenovirus complexed with its internalization receptor, α(v)β5 integrin
-
Chiu CY, Mathias P, Nemerow GR, Stewart PL. 1999. Structure of adenovirus complexed with its internalization receptor, α(v)β5 integrin. J. Virol. 73:6759-6768.
-
(1999)
J. Virol
, vol.73
, pp. 6759-6768
-
-
Chiu, C.Y.1
Mathias, P.2
Nemerow, G.R.3
Stewart, P.L.4
-
10
-
-
0033942486
-
The first step of adenovirus type 2 disassembly occurs at the cell surface, independently of endocytosis and escape to the cytosol
-
Nakano MY, Boucke K, Suomalainen M, Stidwill RP, Greber UF. 2000. The first step of adenovirus type 2 disassembly occurs at the cell surface, independently of endocytosis and escape to the cytosol. J. Virol. 74:7085-7095.
-
(2000)
J. Virol
, vol.74
, pp. 7085-7095
-
-
Nakano, M.Y.1
Boucke, K.2
Suomalainen, M.3
Stidwill, R.P.4
Greber, U.F.5
-
11
-
-
0035885441
-
Human α-defensin 1 (HNP-1) inhibits adenoviral infection in vitro
-
Bastian A, Schäfer H. 2001. Human α-defensin 1 (HNP-1) inhibits adenoviral infection in vitro. Regul. Pept. 101:157-161.
-
(2001)
Regul. Pept
, vol.101
, pp. 157-161
-
-
Bastian, A.1
Schäfer, H.2
-
12
-
-
0033541516
-
Epithelial defensins impair adenoviral infection: implication for adenovirus-mediated gene therapy
-
Gropp R, Frye M, Wagner TOF, Bargon J. 1999. Epithelial defensins impair adenoviral infection: implication for adenovirus-mediated gene therapy. Hum. Gene Ther. 10:957-964.
-
(1999)
Hum. Gene Ther.
, vol.10
, pp. 957-964
-
-
Gropp, R.1
Frye, M.2
Wagner, T.O.F.3
Bargon, J.4
-
13
-
-
33745698864
-
Defensins in innate antiviral immunity
-
Klotman ME, Chang TL. 2006. Defensins in innate antiviral immunity. Nat. Rev. Immunol. 6:447-456.
-
(2006)
Nat. Rev. Immunol
, vol.6
, pp. 447-456
-
-
Klotman, M.E.1
Chang, T.L.2
-
14
-
-
20644462344
-
Mammalian defensins in the antimicrobial immune response
-
Selsted ME, Ouellette AJ. 2005. Mammalian defensins in the antimicrobial immune response. Nat. Immunol. 6:551-557.
-
(2005)
Nat. Immunol
, vol.6
, pp. 551-557
-
-
Selsted, M.E.1
Ouellette, A.J.2
-
15
-
-
77954682175
-
Insight into the mechanisms of adenovirus capsid disassembly from studies of defensin neutralization
-
doi:10.1371 /journal.ppat.1000959
-
Smith JG, Silvestry M, Lindert S, Lu W, Nemerow GR, Stewart PL. 2010. Insight into the mechanisms of adenovirus capsid disassembly from studies of defensin neutralization. PLoS Pathog. 6:e1000959. doi:10.1371 /journal.ppat.1000959.
-
(2010)
PLoS Pathog
, vol.6
-
-
Smith, J.G.1
Silvestry, M.2
Lindert, S.3
Lu, W.4
Nemerow, G.R.5
Stewart, P.L.6
-
16
-
-
38049030654
-
Mechanism of adenovirus neutralization by human α-defensins
-
Smith JG, Nemerow GR. 2008. Mechanism of adenovirus neutralization by human α-defensins. Cell Host Microbe 3:11-19.
-
(2008)
Cell Host Microbe
, vol.3
, pp. 11-19
-
-
Smith, J.G.1
Nemerow, G.R.2
-
17
-
-
77950470139
-
Direct evidence from singlecell analysis that human α-defensins block adenovirus uncoating to neutralize infection
-
Nguyen EK, Nemerow GR, Smith JG. 2010. Direct evidence from singlecell analysis that human α-defensins block adenovirus uncoating to neutralize infection. J. Virol. 84:4041-4049.
-
(2010)
J. Virol
, vol.84
, pp. 4041-4049
-
-
Nguyen, E.K.1
Nemerow, G.R.2
Smith, J.G.3
-
19
-
-
80054763139
-
How to perform a nanoindentation experiment on a virus
-
Roos WH. 2011. How to perform a nanoindentation experiment on a virus. Methods Mol. Biol. 783:251-264.
-
(2011)
Methods Mol. Biol
, vol.783
, pp. 251-264
-
-
Roos, W.H.1
-
20
-
-
33748771993
-
DNA-mediated anisotropic mechanical reinforcement of a virus
-
Carrasco C, Carreira A, Schaap IAT, Serena PA, Gómez-Herrero J, Mateu MG, De Pablo PJ. 2006. DNA-mediated anisotropic mechanical reinforcement of a virus. Proc. Natl. Acad. Sci. U. S. A. 103:13706 -13711.
-
(2006)
Proc. Natl. Acad. Sci. U.S.A
, vol.103
, pp. 13706-13711
-
-
Carrasco, C.1
Carreira, A.2
Schaap, I.A.T.3
Serena, P.A.4
Gómez-Herrero, J.5
Mateu, M.G.6
De Pablo, P.J.7
-
22
-
-
33646547330
-
Nanoindentation studies of full and empty viral capsids and the effects of capsid protein mutations on elasticity and strength
-
Michel JP, Ivanovska IL, Gibbons MM, Klug WS, Knobler CM, Wuite GJL, Schmidt CF. 2006. Nanoindentation studies of full and empty viral capsids and the effects of capsid protein mutations on elasticity and strength. Proc. Natl. Acad. Sci. U. S. A. 103:6184-6189.
-
(2006)
Proc. Natl. Acad. Sci. U.S.A
, vol.103
, pp. 6184-6189
-
-
Michel, J.P.1
Ivanovska, I.L.2
Gibbons, M.M.3
Klug, W.S.4
Knobler, C.M.5
Wuite, G.J.L.6
Schmidt, C.F.7
-
23
-
-
67649852610
-
Scaffold expulsion and genome packaging trigger stabilization of herpes simplex virus capsids
-
Roos WH, Radtke K, Kniesmeijer E, Geertsema H, Sodeik B, Wuite GJL. 2009. Scaffold expulsion and genome packaging trigger stabilization of herpes simplex virus capsids. Proc. Natl. Acad. Sci. U. S. A. 106:9673-9678.
-
(2009)
Proc. Natl. Acad. Sci. U.S.A
, vol.106
, pp. 9673-9678
-
-
Roos, W.H.1
Radtke, K.2
Kniesmeijer, E.3
Geertsema, H.4
Sodeik, B.5
Wuite, G.J.L.6
-
24
-
-
84863115865
-
Mechanics of bacteriophage maturation
-
Roos WH, Gertsman I, May ER, Brooks CL, III, Johnson JE, Wuite GJL. 2012. Mechanics of bacteriophage maturation. Proc. Natl. Acad. Sci. U. S. A. 109:2342-2347.
-
(2012)
Proc. Natl. Acad. Sci. U.S.A
, vol.109
, pp. 2342-2347
-
-
Roos, W.H.1
Gertsman, I.2
May, E.R.3
Brooks, C.L.4
Johnson, J.E.5
Wuite, G.J.L.6
-
25
-
-
84866056104
-
The role of capsid maturation on adenovirus priming for sequential uncoating
-
Pérez-Berná AJ, Ortega-Esteban A, Menendez-Conejero R, Winkler DC, Menendez M, Steven AC, Flint SJ, de Pablo PJ, San Martin C. 2012. The role of capsid maturation on adenovirus priming for sequential uncoating. J. Biol. Chem. 287:31582-31595.
-
(2012)
J. Biol. Chem
, vol.287
, pp. 31582-31595
-
-
Pérez-Berná, A.J.1
Ortega-Esteban, A.2
Menendez-Conejero, R.3
Winkler, D.C.4
Menendez, M.5
Steven, A.C.6
Flint, S.J.7
de Pablo, P.J.8
San Martin, C.9
-
26
-
-
79951816920
-
Built-in mechanical stress in viral shells
-
Carrasco C, Luque A, Hernando-Pérez M, Miranda R, Carrascosa JL, Serena PA, De Ridder M, Raman A, Gómez-Herrero J, Schaap IAT, Reguera D, De Pablo PJ. 2011. Built-in mechanical stress in viral shells. Biophys. J. 100:1100 -1108.
-
(2011)
Biophys. J
, vol.100
, pp. 1100-1108
-
-
Carrasco, C.1
Luque, A.2
Hernando-Pérez, M.3
Miranda, R.4
Carrascosa, J.L.5
Serena, P.A.6
De Ridder, M.7
Raman, A.8
Gómez-Herrero, J.9
Schaap, I.A.T.10
Reguera, D.11
De Pablo, P.J.12
-
27
-
-
80755142791
-
Prestress strengthens the shell of Norwalk virus nanoparticles
-
Baclayon M, Shoemaker GK, Uetrecht C, Crawford SE, Estes MK, Prasad BVV, Heck AJR, Wuite GJL, Roos WH. 2011. Prestress strengthens the shell of Norwalk virus nanoparticles. Nano Lett. 11:4865-4869.
-
(2011)
Nano Lett
, vol.11
, pp. 4865-4869
-
-
Baclayon, M.1
Shoemaker, G.K.2
Uetrecht, C.3
Crawford, S.E.4
Estes, M.K.5
Prasad, B.V.V.6
Heck, A.J.R.7
Wuite, G.J.L.8
Roos, W.H.9
-
28
-
-
33847777367
-
A stiffness switch in human immunodeficiency virus
-
Kol N, Shi Y, Tsvitov M, Barlam D, Shneck RZ, Kay MS, Rousso I. 2007. A stiffness switch in human immunodeficiency virus. Biophys. J. 92:1777-1783.
-
(2007)
Biophys. J
, vol.92
, pp. 1777-1783
-
-
Kol, N.1
Shi, Y.2
Tsvitov, M.3
Barlam, D.4
Shneck, R.Z.5
Kay, M.S.6
Rousso, I.7
-
29
-
-
0031003549
-
Cryo-EM visualization of an exposed RGD epitope on adenovirus that escapes antibody neutralization
-
Stewart PL, Chiu CY, Huang S, Muir T, Zhao Y, Chait B, Mathias P, Nemerow GR. 1997. Cryo-EM visualization of an exposed RGD epitope on adenovirus that escapes antibody neutralization. EMBO J. 16:1189-1198.
-
(1997)
EMBO J
, vol.16
, pp. 1189-1198
-
-
Stewart, P.L.1
Chiu, C.Y.2
Huang, S.3
Muir, T.4
Zhao, Y.5
Chait, B.6
Mathias, P.7
Nemerow, G.R.8
-
30
-
-
0037683196
-
Adenovirus serotype 5 fiber shaft influences in vivo gene transfer in mice
-
Smith TAG, Idamakanti N, Rollence ML, Marshall-Neff J, Kim J, Mulgrew K, Nemerow GR, Kaleko M, Stevenson SC. 2003. Adenovirus serotype 5 fiber shaft influences in vivo gene transfer in mice. Hum. Gene Ther. 14:777-787.
-
(2003)
Hum. Gene Ther
, vol.14
, pp. 777-787
-
-
Smith, T.A.G.1
Idamakanti, N.2
Rollence, M.L.3
Marshall-Neff, J.4
Kim, J.5
Mulgrew, K.6
Nemerow, G.R.7
Kaleko, M.8
Stevenson, S.C.9
-
31
-
-
0001155528
-
Calibration of rectangular atomic force microscope cantilevers
-
Sader JE, Chon JWM, Mulvaney P. 1999. Calibration of rectangular atomic force microscope cantilevers. Rev. Sci. Instrum. 70:3967-3969.
-
(1999)
Rev. Sci. Instrum
, vol.70
, pp. 3967-3969
-
-
Sader, J.E.1
Chon, J.W.M.2
Mulvaney, P.3
-
32
-
-
84865818268
-
Probing the impact of loading rate on the mechanical properties of viral nanoparticles
-
Snijder J, Ivanovska IL, Baclayon M, Roos WH, Wuite GJL. 2012. Probing the impact of loading rate on the mechanical properties of viral nanoparticles. Micron 43:1343-1350.
-
(2012)
Micron
, vol.43
, pp. 1343-1350
-
-
Snijder, J.1
Ivanovska, I.L.2
Baclayon, M.3
Roos, W.H.4
Wuite, G.J.L.5
-
33
-
-
84857126770
-
Minimizing tip-sample forces in jumping mode atomic force microscopy in liquid
-
Ortega-Esteban A, Horcas I, Hernando-Pérez M, Ares P, Pérez-Berná AJ, San Martín C, Carrascosa JL, De Pablo PJ, Gómez-Herrero J. 2012. Minimizing tip-sample forces in jumping mode atomic force microscopy in liquid. Ultramicroscopy 114:56-61.
-
(2012)
Ultramicroscopy
, vol.114
, pp. 56-61
-
-
Ortega-Esteban, A.1
Horcas, I.2
Hernando-Pérez, M.3
Ares, P.4
Pérez-Berná, A.J.5
San Martín, C.6
Carrascosa, J.L.7
De Pablo, P.J.8
Gómez-Herrero, J.9
-
34
-
-
34047109564
-
WSXM: a software for scanning probe microscopy and a tool for nanotechnology
-
Horcas I, Fernández R, Gómez-Rodríguez JM, Colchero J, Gómez-Herrero J, Baro AM. 2007. WSXM: a software for scanning probe microscopy and a tool for nanotechnology. Rev. Sci.Instrum. 78:013705.
-
(2007)
Rev. Sci. Instrum
, vol.78
, pp. 013705
-
-
Horcas, I.1
Fernández, R.2
Gómez-Rodríguez, J.M.3
Colchero, J.4
Gómez-Herrero, J.5
Baro, A.M.6
-
35
-
-
79961244262
-
Discrete fracture patterns of virus shells reveal mechanical building blocks
-
Ivanovska IL, Miranda R, Carrascosa JL, Wuite GJL, Schmidt CF. 2011. Discrete fracture patterns of virus shells reveal mechanical building blocks. Proc. Natl. Acad. Sci. U. S. A. 108:12611-12616.
-
(2011)
Proc. Natl. Acad. Sci. U.S.A
, vol.108
, pp. 12611-12616
-
-
Ivanovska, I.L.1
Miranda, R.2
Carrascosa, J.L.3
Wuite, G.J.L.4
Schmidt, C.F.5
-
36
-
-
0000290506
-
A dense non-crystallographic packing of equal spheres
-
Mackay AL. 1962. A dense non-crystallographic packing of equal spheres. Acta Crystallogr. 15:916 -918.
-
(1962)
Acta Crystallogr
, vol.15
, pp. 916-918
-
-
Mackay, A.L.1
-
37
-
-
0000197372
-
Large amplitude elastic motions in proteins from a single-parameter, atomic analysis
-
Tirion MM. 1996. Large amplitude elastic motions in proteins from a single-parameter, atomic analysis. Phys. Rev. Lett. 77:1905-1908.
-
(1996)
Phys. Rev. Lett
, vol.77
, pp. 1905-1908
-
-
Tirion, M.M.1
-
38
-
-
33745024278
-
Symmetry, form, and shape: guiding principles for robustness in macromolecular machines
-
Tama F, Brooks CL, III. 2006. Symmetry, form, and shape: guiding principles for robustness in macromolecular machines. Annu. Rev. Biophys. Biomol. Struct. 35:115-133.
-
(2006)
Annu. Rev. Biophys. Biomol. Struct
, vol.35
, pp. 115-133
-
-
Tama, F.1
Brooks, C.L.2
-
39
-
-
20444440419
-
Normal mode calculations of icosahedral viruses with full dihedral flexibility by use of molecular symmetry
-
Van Vlijmen HWT, Karplus M. 2005. Normal mode calculations of icosahedral viruses with full dihedral flexibility by use of molecular symmetry. J. Mol. Biol. 350:528 -542.
-
(2005)
J. Mol. Biol
, vol.350
, pp. 528-542
-
-
Van Vlijmen, H.W.T.1
Karplus, M.2
-
40
-
-
68849126586
-
Vibrational dynamics of icosahedrally symmetric biomolecular assemblies compared with predictions based on continuum elasticity
-
Yang Z, Bahar I, Widom M. 2009. Vibrational dynamics of icosahedrally symmetric biomolecular assemblies compared with predictions based on continuum elasticity. Biophys. J. 96:4438-4448.
-
(2009)
Biophys. J
, vol.96
, pp. 4438-4448
-
-
Yang, Z.1
Bahar, I.2
Widom, M.3
-
41
-
-
79960315012
-
Viral capsid equilibrium dynamics reveals nonuniform elastic properties
-
May ER, Aggarwal A, Klug WS, Brooks CL. 2011. Viral capsid equilibrium dynamics reveals nonuniform elastic properties. Biophys. J. 100:L59-L61.
-
(2011)
Biophys. J
, vol.100
-
-
May, E.R.1
Aggarwal, A.2
Klug, W.S.3
Brooks, C.L.4
-
42
-
-
0037663931
-
Flexibility of the adenovirus fiber is required for efficient receptor interaction
-
Wu E, Pache L, Von Seggern DJ, Mullen TM, Mikyas Y, Stewart PL, Nemerow GR. 2003. Flexibility of the adenovirus fiber is required for efficient receptor interaction. J. Virol. 77:7225-7235.
-
(2003)
J. Virol
, vol.77
, pp. 7225-7235
-
-
Wu, E.1
Pache, L.2
Von Seggern, D.J.3
Mullen, T.M.4
Mikyas, Y.5
Stewart, P.L.6
Nemerow, G.R.7
-
43
-
-
56049098784
-
Influence of nonuniform geometry on nanoindentation of viral capsids
-
Gibbons MM, Klug WS. 2008. Influence of nonuniform geometry on nanoindentation of viral capsids. Biophys. J. 95:3640 -3649.
-
(2008)
Biophys. J
, vol.95
, pp. 3640-3649
-
-
Gibbons, M.M.1
Klug, W.S.2
-
44
-
-
84864374122
-
Mechanical elasticity as a physical signature of conformational dynamics in a virus particle
-
Castellanos M, Perez R, Carrasco C, Hernando-Perez M, Gomez-Herrero J, De Pablo PJ, Mateu MG. 2012. Mechanical elasticity as a physical signature of conformational dynamics in a virus particle. Proc. Natl. Acad. Sci. U. S. A. 109:12028 -12033.
-
(2012)
Proc. Natl. Acad. Sci. U.S.A
, vol.109
, pp. 12028-12033
-
-
Castellanos, M.1
Perez, R.2
Carrasco, C.3
Hernando-Perez, M.4
Gomez-Herrero, J.5
De Pablo, P.J.6
Mateu, M.G.7
-
45
-
-
9644266693
-
Diversity and identity of mechanical properties of icosahedral viral capsids studied with elastic network normal mode analysis
-
Tama F, Brooks CL, III. 2005. Diversity and identity of mechanical properties of icosahedral viral capsids studied with elastic network normal mode analysis. J. Mol. Biol. 345:299 -314.
-
(2005)
J. Mol. Biol
, vol.345
, pp. 299-314
-
-
Tama, F.1
Brooks, C.L.2
-
46
-
-
84863405173
-
Exploring the symmetry and mechanism of virus capsid maturation via an ensemble of pathways
-
May ER, Feng J, Brooks CL, III. 2012. Exploring the symmetry and mechanism of virus capsid maturation via an ensemble of pathways. Biophys. J. 102:606-612.
-
(2012)
Biophys. J
, vol.102
, pp. 606-612
-
-
May, E.R.1
Feng, J.2
Brooks, C.L.3
-
47
-
-
84867835577
-
Unlocking internal prestress from protein nanoshells
-
Klug WS, Roos WH, Wuite GJL. 2012. Unlocking internal prestress from protein nanoshells. Phys. Rev. Lett. 109:168104.
-
(2012)
Phys. Rev. Lett
, vol.109
, pp. 168104
-
-
Klug, W.S.1
Roos, W.H.2
Wuite, G.J.L.3
-
49
-
-
84861163811
-
Relevance of capsid structure in the buckling and maturation of spherical viruses
-
doi:10 .1088/1478-3975/9/3/036003
-
Aznar M, Luque A, Reguera D. 2012. Relevance of capsid structure in the buckling and maturation of spherical viruses. Phys. Biol. 9:036003. doi:10 .1088/1478-3975/9/3/036003.
-
(2012)
Phys. Biol
, vol.9
, pp. 036003
-
-
Aznar, M.1
Luque, A.2
Reguera, D.3
-
50
-
-
77955350752
-
Squeezing protein shells: how continuum elastic models, molecular dynamics simulations, and experiments coalesce at the nanoscale
-
Roos WH, Gibbons MM, Arkhipov A, Uetrecht C, Watts NR, Wingfield PT, Steven AC, Heck AJR, Schulten K, Klug WS, Wuite GJL. 2010. Squeezing protein shells: how continuum elastic models, molecular dynamics simulations, and experiments coalesce at the nanoscale. Biophys. J. 99:1175-1181.
-
(2010)
Biophys. J
, vol.99
, pp. 1175-1181
-
-
Roos, W.H.1
Gibbons, M.M.2
Arkhipov, A.3
Uetrecht, C.4
Watts, N.R.5
Wingfield, P.T.6
Steven, A.C.7
Heck, A.J.R.8
Schulten, K.9
Klug, W.S.10
Wuite, G.J.L.11
|