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Volumn 79, Issue 4, 2013, Pages 1212-1220

Comparative quantitative analysis of gene expression profiles of glycoside hydrolase family 10 xylanases in the sheep rumen during a feeding cycle

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL POPULATION; CORRELATION ANALYSIS; EXPRESSION PATTERNS; FUNCTIONAL GENES; GENE EXPRESSION PROFILES; GENE FRAGMENTS; GLYCOSIDE HYDROLASE FAMILY 10; HYDROLYTIC ENZYME; PLANT MATERIAL; PLANT POLYSACCHARIDES; RELATIVE ABUNDANCE; TIME POINTS; TRANSCRIPTIONAL LEVELS; XYLANASES;

EID: 84874720599     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.02733-12     Document Type: Article
Times cited : (14)

References (50)
  • 1
    • 41349093562 scopus 로고    scopus 로고
    • Plant cell wall breakdown by anaerobic microorganisms from the mammalian digestive tract
    • Flint HJ, Bayer EA. 2008. Plant cell wall breakdown by anaerobic microorganisms from the mammalian digestive tract. Ann. N. Y. Acad. Sci. 1125:280 -288.
    • (2008) Ann. N. Y. Acad. Sci. , vol.1125 , pp. 280-288
    • Flint, H.J.1    Bayer, E.A.2
  • 2
    • 0023717041 scopus 로고
    • Synergism of rumen microbial hydrolases during degradation of plant polymers
    • Kopecny J, Williams AG. 1988. Synergism of rumen microbial hydrolases during degradation of plant polymers. Folia Microbiol. (Praha) 33:208- 212.
    • (1988) Folia Microbiol. (Praha) , vol.33 , pp. 208-212
    • Kopecny, J.1    Williams, A.G.2
  • 4
    • 33947430562 scopus 로고    scopus 로고
    • Effect of hemicellulose and lignin removal on enzymatic hydrolysis of steam pretreated corn stover
    • Öhgren K, Bura R, Saddler J, Zacchi G. 2007. Effect of hemicellulose and lignin removal on enzymatic hydrolysis of steam pretreated corn stover. Bioresour. Technol. 98:2503-2510.
    • (2007) Bioresour. Technol. , vol.98 , pp. 2503-2510
    • Öhgren, K.1    Bura, R.2    Saddler, J.3    Zacchi, G.4
  • 5
    • 12144282020 scopus 로고    scopus 로고
    • Xylanases, xylanase families and extremophilic xylanases
    • Collins T, Gerday C, Feller G. 2005. Xylanases, xylanase families and extremophilic xylanases. FEMS Microbiol. Rev. 29:3-23.
    • (2005) FEMS Microbiol. Rev. , vol.29 , pp. 3-23
    • Collins, T.1    Gerday, C.2    Feller, G.3
  • 12
    • 77956207198 scopus 로고    scopus 로고
    • Fungi unearthed: transcripts encoding lignocellulolytic and chitinolytic enzymes in forest soil
    • Kellner H, Zak DR, Vandenbol M. 2010. Fungi unearthed: transcripts encoding lignocellulolytic and chitinolytic enzymes in forest soil. PLoS One 5:e10971.
    • (2010) PLoS One , vol.5
    • Kellner, H.1    Zak, D.R.2    Vandenbol, M.3
  • 13
    • 78650761333 scopus 로고    scopus 로고
    • Diversity of beetle genes encoding novel plant cell wall degrading enzymes
    • Pauchet Y, Wilkinson P, Chauhan R, ffrench-Constant RH. 2010. Diversity of beetle genes encoding novel plant cell wall degrading enzymes. PLoS One 5:e15635.
    • (2010) PLoS One , vol.5
    • Pauchet, Y.1    Wilkinson, P.2    Chauhan, R.3    ffrench-Constant, R.H.4
  • 14
    • 79958270877 scopus 로고    scopus 로고
    • Transcriptomic analysis of Clostridium thermocellum ATCC 27405 cellulose fermentation
    • Raman B, McKeown CK, Rodriguez M, JR, Brown SD, Mielenz JR. 2011. Transcriptomic analysis of Clostridium thermocellum ATCC 27405 cellulose fermentation. BMC Microbiol. 11:134.
    • (2011) BMC Microbiol , vol.11 , pp. 134
    • Raman, B.1    McKeown, C.K.2    Rodriguez Jr, M.3    Brown, S.D.4    Mielenz, J.R.5
  • 16
    • 0006686524 scopus 로고
    • Rumenocentesis: a technique for collecting rumen fluid for the diagnosis of subacute rumen acidosis in dairy herds
    • Nordlund K, Garrett E. 1994. Rumenocentesis: a technique for collecting rumen fluid for the diagnosis of subacute rumen acidosis in dairy herds. Bov. Practitioner 28:104.
    • (1994) Bov. Practitioner , vol.28 , pp. 104
    • Nordlund, K.1    Garrett, E.2
  • 18
    • 33751016342 scopus 로고    scopus 로고
    • Development of a real-time PCR assay for monitoring anaerobic fungal and cellulolytic bacterial populations within the rumen
    • Denman SE, McSweeney CS. 2006. Development of a real-time PCR assay for monitoring anaerobic fungal and cellulolytic bacterial populations within the rumen. FEMS Microbiol. Ecol. 58:572-582.
    • (2006) FEMS Microbiol. Ecol. , vol.58 , pp. 572-582
    • Denman, S.E.1    McSweeney, C.S.2
  • 19
    • 33644870885 scopus 로고    scopus 로고
    • Development and validation of a real-time PCR method to quantify rumen protozoa and examination of variability between Entodinium populations in sheep offered a hay-based diet
    • Skillman LC, Toovey AF, Williams AJ, Wright ADG. 2006. Development and validation of a real-time PCR method to quantify rumen protozoa and examination of variability between Entodinium populations in sheep offered a hay-based diet. Appl. Environ. Microbiol. 72:200 -206.
    • (2006) Appl. Environ. Microbiol. , vol.72 , pp. 200-206
    • Skillman, L.C.1    Toovey, A.F.2    Williams, A.J.3    Wright, A.D.G.4
  • 20
    • 38849141600 scopus 로고    scopus 로고
    • Effects of chemical treatments of rice straw on rumen fermentation characteristics, fibrolytic enzyme activities and populations of liquid- and solid-associated ruminal microbes in vitro
    • Chen X, Wang J, Wu Y, Liu J. 2008. Effects of chemical treatments of rice straw on rumen fermentation characteristics, fibrolytic enzyme activities and populations of liquid- and solid-associated ruminal microbes in vitro. Anim. Feed Sci. Technol. 141:1-14.
    • (2008) Anim. Feed Sci. Technol. , vol.141 , pp. 1-14
    • Chen, X.1    Wang, J.2    Wu, Y.3    Liu, J.4
  • 21
    • 47849091430 scopus 로고    scopus 로고
    • Influence of direct-fed fibrolytic enzymes on diet digestibility and ruminal activity in sheep fed a grass hay-based diet
    • Giraldo LA, Tejido ML, Ranilla MJ, Ramos S, Carro MD. 2008. Influence of direct-fed fibrolytic enzymes on diet digestibility and ruminal activity in sheep fed a grass hay-based diet. J. Anim. Sci. 86:1617-1623.
    • (2008) J. Anim. Sci. , vol.86 , pp. 1617-1623
    • Giraldo, L.A.1    Tejido, M.L.2    Ranilla, M.J.3    Ramos, S.4    Carro, M.D.5
  • 22
    • 78649672819 scopus 로고    scopus 로고
    • Comparative study on the rumen microbial populations, hydrolytic enzyme activities and dry matter degradability between different species of ruminant
    • Moon YH, Ok JU, Lee SJ, Ha JK, Lee SS. 2010. Comparative study on the rumen microbial populations, hydrolytic enzyme activities and dry matter degradability between different species of ruminant. Anim. Sci. J. 81:642- 647.
    • (2010) Anim. Sci. J. , vol.81 , pp. 642-647
    • Moon, Y.H.1    Ok, J.U.2    Lee, S.J.3    Ha, J.K.4    Lee, S.S.5
  • 23
    • 62349131091 scopus 로고    scopus 로고
    • Development of a RT-qPCR method for the quantification of Fibrobacter succinogenes S85 glycoside hydrolase transcripts in the rumen content of gnotobiotic and conventional sheep
    • Bera-Maillet C, Mosoni P, Kwasiborski A, Suau F, Ribot Y, Forano E. 2009. Development of a RT-qPCR method for the quantification of Fibrobacter succinogenes S85 glycoside hydrolase transcripts in the rumen content of gnotobiotic and conventional sheep. J. Microbiol. Methods 77:8 -16.
    • (2009) J. Microbiol. Methods , vol.77 , pp. 8-16
    • Bera-Maillet, C.1    Mosoni, P.2    Kwasiborski, A.3    Suau, F.4    Ribot, Y.5    Forano, E.6
  • 24
    • 47149090525 scopus 로고    scopus 로고
    • Real-time quantitative analysis of carbon catabolite derepression of cellulolytic genes expressed in the basidiomycete Phanerochaete chrysosporium
    • Suzuki H, Igarashi K, Samejima M. 2008. Real-time quantitative analysis of carbon catabolite derepression of cellulolytic genes expressed in the basidiomycete Phanerochaete chrysosporium. Appl. Microbiol. Biotechnol. 80:99 -106.
    • (2008) Appl. Microbiol. Biotechnol. , vol.80 , pp. 99-106
    • Suzuki, H.1    Igarashi, K.2    Samejima, M.3
  • 25
    • 79952092709 scopus 로고    scopus 로고
    • Diversity, abundance and characterization of ruminal cysteine phytases suggest their important role in phytate degradation
    • Huang H, Zhang R, Fu D, Luo J, Li Z, Luo H, Shi P, Yang P, Diao Q, Yao B. 2011. Diversity, abundance and characterization of ruminal cysteine phytases suggest their important role in phytate degradation. Environ. Microbiol. 13:747-757.
    • (2011) Environ. Microbiol. , vol.13 , pp. 747-757
    • Huang, H.1    Zhang, R.2    Fu, D.3    Luo, J.4    Li, Z.5    Luo, H.6    Shi, P.7    Yang, P.8    Diao, Q.9    Yao, B.10
  • 26
    • 79751476499 scopus 로고    scopus 로고
    • High genetic diversity and different distributions of glycosyl hydrolase family 10 and 11 xylanases in the goat rumen
    • Wang G, Luo H, Meng K, Wang Y, Huang H, Shi P, Pan X, Yang P, Diao Q, Zhang H, Yao B. 2011. High genetic diversity and different distributions of glycosyl hydrolase family 10 and 11 xylanases in the goat rumen. PLoS One 6:e16731.
    • (2011) PLoS One , vol.6
    • Wang, G.1    Luo, H.2    Meng, K.3    Wang, Y.4    Huang, H.5    Shi, P.6    Pan, X.7    Yang, P.8    Diao, Q.9    Zhang, H.10    Yao, B.11
  • 27
    • 84864008354 scopus 로고    scopus 로고
    • Abundance and genetic diversity of microbial polygalacturonase and pectate lyase in the sheep rumen ecosystem
    • Yuan P, Meng K, Wang Y, Luo H, Huang H, Shi P, Bai Y, Yang P, Yao B. 2012. Abundance and genetic diversity of microbial polygalacturonase and pectate lyase in the sheep rumen ecosystem. PLoS One 7:e40940.
    • (2012) PLoS One , vol.7
    • Yuan, P.1    Meng, K.2    Wang, Y.3    Luo, H.4    Huang, H.5    Shi, P.6    Bai, Y.7    Yang, P.8    Yao, B.9
  • 28
    • 0023214784 scopus 로고
    • Use of particle-bound microbial enzyme activity to predict the rate and extent of fibre degradation in the rumen
    • Silva AT, Wallace R, Orskov E. 1987. Use of particle-bound microbial enzyme activity to predict the rate and extent of fibre degradation in the rumen. Br. J. Nutr. 57:407- 415.
    • (1987) Br. J. Nutr. , vol.57 , pp. 407-415
    • Silva, A.T.1    Wallace, R.2    Orskov, E.3
  • 29
    • 34248512980 scopus 로고    scopus 로고
    • Effect of complete feed blocks or grazing and supplementation of lambs on performance, nutrient utilisation, rumen fermentation and rumen microbial enzymes
    • Raghuvansi SKS, Prasad R, Tripathi MK, Mishra AS, Chaturvedi OH, Misra AK, Saraswat BL, Jakhmola RC. 2007. Effect of complete feed blocks or grazing and supplementation of lambs on performance, nutrient utilisation, rumen fermentation and rumen microbial enzymes. Animal 1:221-226.
    • (2007) Animal , vol.1 , pp. 221-226
    • Raghuvansi, S.K.S.1    Prasad, R.2    Tripathi, M.K.3    Mishra, A.S.4    Chaturvedi, O.H.5    Misra, A.K.6    Saraswat, B.L.7    Jakhmola, R.C.8
  • 31
    • 22844455257 scopus 로고    scopus 로고
    • Effect of forage to concentrate ratio in the diet on ruminal fermentation and digesta flow kinetics in sheep offered food at a fixed and restricted level of intake
    • Carro M, Valdés C, Ranilla M, González J. 2000. Effect of forage to concentrate ratio in the diet on ruminal fermentation and digesta flow kinetics in sheep offered food at a fixed and restricted level of intake. Anim. Sci. 70:127-134.
    • (2000) Anim. Sci. , vol.70 , pp. 127-134
    • Carro, M.1    Valdés, C.2    Ranilla, M.3    González, J.4
  • 32
    • 34250220631 scopus 로고    scopus 로고
    • Construction of soil environmental DNA cosmid libraries and screening for clones that produce biologically active small molecules
    • Brady SF. 2007. Construction of soil environmental DNA cosmid libraries and screening for clones that produce biologically active small molecules. Nat. Protoc. 2:1297-1305.
    • (2007) Nat. Protoc. , vol.2 , pp. 1297-1305
    • Brady, S.F.1
  • 33
    • 0033990048 scopus 로고    scopus 로고
    • Primer3 on theWWWfor general users and for biologist programmers
    • Rozen S, Skaletsky HJ. 2000. Primer3 on theWWWfor general users and for biologist programmers. Methods Mol. Biol. 132:365-386.
    • (2000) Methods Mol. Biol. , vol.132 , pp. 365-386
    • Rozen, S.1    Skaletsky, H.J.2
  • 34
    • 33745634395 scopus 로고    scopus 로고
    • CD- hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences
    • Li W, Godzik A. 2006. CD-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics 22:1658- 1659.
    • (2006) Bioinformatics , vol.22 , pp. 1658-1659
    • Li, W.1    Godzik, A.2
  • 35
    • 0027968068 scopus 로고
    • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson JD, Higgins DG, Gibson TJ. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673- 4680.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 36
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4 0
    • Tamura K, Dudley J, Nei M, Kumar S. 2007. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24:1596 -1599.
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 37
    • 15444362001 scopus 로고    scopus 로고
    • Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness
    • Schloss PD, Handelsman J. 2005. Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Appl. Environ. Microbiol. 71:1501-1506.
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 1501-1506
    • Schloss, P.D.1    Handelsman, J.2
  • 38
    • 77955629331 scopus 로고    scopus 로고
    • Direct and efficient cloning of full-length genes from environmental DNA by RTqPCR and modified TAIL-PCR
    • Huang H, Wang G, Zhao Y, Shi P, Luo H, Yao B. 2010. Direct and efficient cloning of full-length genes from environmental DNA by RTqPCR and modified TAIL-PCR. Appl. Microbiol. Biotechnol. 87:1141- 1149.
    • (2010) Appl. Microbiol. Biotechnol. , vol.87 , pp. 1141-1149
    • Huang, H.1    Wang, G.2    Zhao, Y.3    Shi, P.4    Luo, H.5    Yao, B.6
  • 39
    • 78650821698 scopus 로고    scopus 로고
    • A novel cold-active xylanase gene from the environmental DNA of goat rumen contents: direct cloning, expression and enzyme characterization
    • Wang G, Luo H, Wang Y, Huang H, Shi P, Yang P, Meng K, Bai Y, Yao B. 2011. A novel cold-active xylanase gene from the environmental DNA of goat rumen contents: direct cloning, expression and enzyme characterization. Bioresour. Technol. 102:3330 -3336.
    • (2011) Bioresour. Technol. , vol.102 , pp. 3330-3336
    • Wang, G.1    Luo, H.2    Wang, Y.3    Huang, H.4    Shi, P.5    Yang, P.6    Meng, K.7    Bai, Y.8    Yao, B.9
  • 41
    • 0036278859 scopus 로고    scopus 로고
    • Gene quantification using real-time quantitative PCR: an emerging technology hits the mainstream
    • Ginzinger DG. 2002. Gene quantification using real-time quantitative PCR: an emerging technology hits the mainstream. Exp. Hematol. 30:503- 512.
    • (2002) Exp. Hematol. , vol.30 , pp. 503-512
    • Ginzinger, D.G.1
  • 42
    • 70349239138 scopus 로고    scopus 로고
    • Quantitative transcriptional analysis of the genes encoding glycoside hydrolase family 7 cellulase isozymes in the basidiomycete Phanerochaete chrysosporium
    • Suzuki H, Igarashi K, Samejima M. 2009. Quantitative transcriptional analysis of the genes encoding glycoside hydrolase family 7 cellulase isozymes in the basidiomycete Phanerochaete chrysosporium. FEMS Microbiol. Lett. 299:159 -165.
    • (2009) FEMS Microbiol. Lett. , vol.299 , pp. 159-165
    • Suzuki, H.1    Igarashi, K.2    Samejima, M.3
  • 43
    • 77956818710 scopus 로고    scopus 로고
    • Cellotriose and cellotetraose as inducers of the genes encoding cellobiohydrolases in the basidiomycete Phanerochaete chrysosporium
    • Suzuki H, Igarashi K, Samejima M. 2010. Cellotriose and cellotetraose as inducers of the genes encoding cellobiohydrolases in the basidiomycete Phanerochaete chrysosporium. Appl. Environ. Microbiol. 76:6164-6170.
    • (2010) Appl. Environ. Microbiol. , vol.76 , pp. 6164-6170
    • Suzuki, H.1    Igarashi, K.2    Samejima, M.3
  • 44
    • 33645505177 scopus 로고    scopus 로고
    • Comparison of in vitro and in vivo reference genes for internal standardization of real-time PCR data
    • Gilsbach R, Kouta M, Bönisch H, Brüss M. 2006. Comparison of in vitro and in vivo reference genes for internal standardization of real-time PCR data. Biotechniques 40:173-177.
    • (2006) Biotechniques , vol.40 , pp. 173-177
    • Gilsbach, R.1    Kouta, M.2    Bönisch, H.3    Brüss, M.4
  • 46
    • 77649205818 scopus 로고    scopus 로고
    • Analysis of circulating microRNA biomarkers in plasma and serum using quantitative reverse transcription-PCR (qRT-PCR)
    • Kroh EM, Parkin RK, Mitchell PS, Tewari M. 2010. Analysis of circulating microRNA biomarkers in plasma and serum using quantitative reverse transcription-PCR (qRT-PCR). Methods 50:298 -301.
    • (2010) Methods , vol.50 , pp. 298-301
    • Kroh, E.M.1    Parkin, R.K.2    Mitchell, P.S.3    Tewari, M.4
  • 47
    • 27944456855 scopus 로고    scopus 로고
    • Rumen microbial ecosystem
    • Kamra D. 2005. Rumen microbial ecosystem. Curr. Sci. 89:124 -135.
    • (2005) Curr. Sci. , vol.89 , pp. 124-135
    • Kamra, D.1
  • 48
    • 84858185944 scopus 로고    scopus 로고
    • Composition and similarity of bovine rumen microbiota across individual animals
    • Jami E, Mizrahi I. 2012. Composition and similarity of bovine rumen microbiota across individual animals. PLoS One 7:e33306.
    • (2012) PLoS One , vol.7
    • Jami, E.1    Mizrahi, I.2
  • 49
    • 0004271150 scopus 로고
    • Elsevier Science Publications Ltd, London, United Kingdom
    • Hobson PN. 1988. The rumen microbial ecosystem. Elsevier Science Publications Ltd, London, United Kingdom.
    • (1988) The rumen microbial ecosystem
    • Hobson, P.N.1
  • 50
    • 0033831649 scopus 로고    scopus 로고
    • Relative contributions of bacteria, protozoa and fungi to in vitro degradation of orchard grass cell walls and their interactions
    • Lee SS, Ha JK, Cheng KJ. 2000. Relative contributions of bacteria, protozoa, and fungi to in vitro degradation of orchard grass cell walls and their interactions. Appl. Environ. Microbiol. 66:3807-3813.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 3807-3813
    • Lee, S.S.1    Ha, J.K.2    Cheng, K.J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.