-
1
-
-
0018034154
-
Structural analysis and in vitro processing to p5 rRNA of a 9S RNA molecule isolated from an rne mutant of E. coli
-
Ghora BK, Apirion D. 1978. Structural analysis and in vitro processing to p5 rRNA of a 9S RNA molecule isolated from an rne mutant of E. coli. Cell 15:1055-1066.
-
(1978)
Cell
, vol.15
, pp. 1055-1066
-
-
Ghora, B.K.1
Apirion, D.2
-
2
-
-
0033577789
-
RNase G (CafA protein) and RNase E are both required for the 5' maturation of 16S ribosomal RNA
-
Li Z, Pandit S, Deutscher MP. 1999. RNase G (CafA protein) and RNase E are both required for the 5' maturation of 16S ribosomal RNA. EMBO J. 18:2878 -2885.
-
(1999)
EMBO J
, vol.18
, pp. 2878-2885
-
-
Li, Z.1
Pandit, S.2
Deutscher, M.P.3
-
3
-
-
0019257396
-
Cloning the gene for ribonuclease E, an RNA processing enzyme
-
Ray A, Apirion D. 1980. Cloning the gene for ribonuclease E, an RNA processing enzyme. Gene 12:87-94.
-
(1980)
Gene
, vol.12
, pp. 87-94
-
-
Ray, A.1
Apirion, D.2
-
4
-
-
0033532514
-
Escherichia coli cafA gene encodes a novel RNase, designated as RNase G, involved in processing of the 5' end of 16S rRNA
-
Wachi M, Umitsuki G, Shimizu M, Takada A, Nagai K. 1999. Escherichia coli cafA gene encodes a novel RNase, designated as RNase G, involved in processing of the 5' end of 16S rRNA. Biochem. Biophys. Res. Commun. 259:483-488.
-
(1999)
Biochem. Biophys. Res. Commun.
, vol.259
, pp. 483-488
-
-
Wachi, M.1
Umitsuki, G.2
Shimizu, M.3
Takada, A.4
Nagai, K.5
-
5
-
-
0037162469
-
Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays
-
Bernstein JA, Khodursky AB, Lin PH, Lin-Chao S, Cohen SN. 2002. Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays. Proc. Natl. Acad. Sci. U. S. A. 99:9697-9702.
-
(2002)
Proc. Natl. Acad. Sci. U. S. A.
, vol.99
, pp. 9697-9702
-
-
Bernstein, J.A.1
Khodursky, A.B.2
Lin, P.H.3
Lin-Chao, S.4
Cohen, S.N.5
-
6
-
-
0036274640
-
RNase G complementation of rne null mutation identifies functional interrelationships with RNase E in Escherichia coli
-
Lee K, Bernstein JA, Cohen SN. 2002. RNase G complementation of rne null mutation identifies functional interrelationships with RNase E in Escherichia coli. Mol. Microbiol. 43:1445-1456.
-
(2002)
Mol. Microbiol.
, vol.43
, pp. 1445-1456
-
-
Lee, K.1
Bernstein, J.A.2
Cohen, S.N.3
-
7
-
-
0018791193
-
A conditional lethal mutation in an Escherichia coli strain with a longer chemical lifetime of messenger RNA
-
Ono M, Kuwano M. 1979. A conditional lethal mutation in an Escherichia coli strain with a longer chemical lifetime of messenger RNA. J. Mol. Biol. 129:343-357.
-
(1979)
J. Mol. Biol.
, vol.129
, pp. 343-357
-
-
Ono, M.1
Kuwano, M.2
-
8
-
-
79955608587
-
Analysis of Escherichia coli RNase E and RNase III activity in vivo using tiling microarrays
-
Stead MB, Marshburn S, Mohanty BK, Mitra J, Castillo LP, Ray D, van Bakel H, Hughes TR, Kushner SR. 2011. Analysis of Escherichia coli RNase E and RNase III activity in vivo using tiling microarrays. Nucleic Acids Res. 39:3188 -3203.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 3188-3203
-
-
Stead, M.B.1
Marshburn, S.2
Mohanty, B.K.3
Mitra, J.4
Castillo, L.P.5
Ray, D.6
van Bakel, H.7
Hughes, T.R.8
Kushner, S.R.9
-
9
-
-
0025814610
-
The rate of processing and degradation of antisense RNAI regulates the replication of ColE1-type plasmids in vivo
-
Lin-Chao S, Cohen SN. 1991. The rate of processing and degradation of antisense RNAI regulates the replication of ColE1-type plasmids in vivo. Cell 65:1233-1242.
-
(1991)
Cell
, vol.65
, pp. 1233-1242
-
-
Lin-Chao, S.1
Cohen, S.N.2
-
10
-
-
0029295957
-
Processing of the precursor to the catalytic RNA subunit of RNase P from Escherichia coli
-
Lundberg U, Altman S. 1995. Processing of the precursor to the catalytic RNA subunit of RNase P from Escherichia coli. RNA 1:327-334.
-
(1995)
RNA
, vol.1
, pp. 327-334
-
-
Lundberg, U.1
Altman, S.2
-
11
-
-
0028568179
-
Ribonuclease E provides substrates for ribonuclease P-dependent processing of a polycistronic mRNA
-
Alifano P, Rivellini F, Piscitelli C, Arraiano CM, Bruni CB, Carlomagno MS. 1994. Ribonuclease E provides substrates for ribonuclease P-dependent processing of a polycistronic mRNA. Genes Dev. 8:3021-3031.
-
(1994)
Genes Dev
, vol.8
, pp. 3021-3031
-
-
Alifano, P.1
Rivellini, F.2
Piscitelli, C.3
Arraiano, C.M.4
Bruni, C.B.5
Carlomagno, M.S.6
-
12
-
-
0038687705
-
A Streptomyces coelicolor functional orthologue of Escherichia coli RNase E shows shuffling of catalytic and PNPase-binding domains
-
Lee K, Cohen SN. 2003. A Streptomyces coelicolor functional orthologue of Escherichia coli RNase E shows shuffling of catalytic and PNPase-binding domains. Mol. Microbiol. 48:349 -360.
-
(2003)
Mol. Microbiol.
, vol.48
, pp. 349-360
-
-
Lee, K.1
Cohen, S.N.2
-
13
-
-
44149118200
-
The RNase E/Gtype endoribonuclease of higher plants is located in the chloroplast and cleaves RNA similarly to the E. coli enzyme
-
Schein A, Sheffy-Levin S, Glaser F, Schuster G. 2008. The RNase E/Gtype endoribonuclease of higher plants is located in the chloroplast and cleaves RNA similarly to the E. coli enzyme. RNA 14:1057-1068.
-
(2008)
RNA
, vol.14
, pp. 1057-1068
-
-
Schein, A.1
Sheffy-Levin, S.2
Glaser, F.3
Schuster, G.4
-
14
-
-
0029962989
-
The N-terminal domain of the rne gene product has RNase E activity and is non-overlapping with the argininerich RNA-binding site
-
McDowall KJ, Cohen SN. 1996. The N-terminal domain of the rne gene product has RNase E activity and is non-overlapping with the argininerich RNA-binding site. J. Mol. Biol. 255:349 -355.
-
(1996)
J. Mol. Biol.
, vol.255
, pp. 349-355
-
-
McDowall, K.J.1
Cohen, S.N.2
-
16
-
-
0029922992
-
A DEAD-box RNA helicase in the Escherichia coli RNA degradosome
-
Py B, Higgins CF, Krisch HM, Carpousis AJ. 1996. A DEAD-box RNA helicase in the Escherichia coli RNA degradosome. Nature 381:169 -172.
-
(1996)
Nature
, vol.381
, pp. 169-172
-
-
Py, B.1
Higgins, C.F.2
Krisch, H.M.3
Carpousis, A.J.4
-
17
-
-
0033048415
-
The C-terminal half of RNase E, which organizes the Escherichia coli degradosome, participates in mRNA degradation but not rRNA processing in vivo
-
Lopez PJ, Marchand I, Joyce SA, Dreyfus M. 1999. The C-terminal half of RNase E, which organizes the Escherichia coli degradosome, participates in mRNA degradation but not rRNA processing in vivo. Mol. Microbiol. 33:188 -199.
-
(1999)
Mol. Microbiol.
, vol.33
, pp. 188-199
-
-
Lopez, P.J.1
Marchand, I.2
Joyce, S.A.3
Dreyfus, M.4
-
18
-
-
0033636189
-
Analysis of mRNA decay and rRNA processing in Escherichia coli in the absence of RNase E-based degradosome assembly
-
Ow MC, Liu Q, Kushner SR. 2000. Analysis of mRNA decay and rRNA processing in Escherichia coli in the absence of RNase E-based degradosome assembly. Mol. Microbiol. 38:854-866.
-
(2000)
Mol. Microbiol.
, vol.38
, pp. 854-866
-
-
Ow, M.C.1
Liu, Q.2
Kushner, S.R.3
-
19
-
-
18744410390
-
Evidence in vivo that the DEAD-boxRNAhelicase RhlB facilitates the degradation of ribosomefree mRNA by RNase E
-
Khemici V, Poljak L, Toesca I, Carpousis AJ. 2005. Evidence in vivo that the DEAD-boxRNAhelicase RhlB facilitates the degradation of ribosomefree mRNA by RNase E. Proc. Natl. Acad. Sci. U. S. A. 102:6913-6918.
-
(2005)
Proc. Natl. Acad. Sci. U. S. A.
, vol.102
, pp. 6913-6918
-
-
Khemici, V.1
Poljak, L.2
Toesca, I.3
Carpousis, A.J.4
-
20
-
-
8544261105
-
Enolase in the RNA degradosome plays a crucial role in the rapid decay of glucose transporter mRNA in the response to phosphosugar stress in Escherichia coli
-
Morita T, Kawamoto H, Mizota T, Inada T, Aiba H. 2004. Enolase in the RNA degradosome plays a crucial role in the rapid decay of glucose transporter mRNA in the response to phosphosugar stress in Escherichia coli. Mol. Microbiol. 54:1063-1075.
-
(2004)
Mol. Microbiol.
, vol.54
, pp. 1063-1075
-
-
Morita, T.1
Kawamoto, H.2
Mizota, T.3
Inada, T.4
Aiba, H.5
-
21
-
-
0018072940
-
Isolation, genetic mapping and some characterization of a mutation in Escherichia coli that affects the processing of ribonucleic acid
-
Apirion D. 1978. Isolation, genetic mapping and some characterization of a mutation in Escherichia coli that affects the processing of ribonucleic acid. Genetics 90:659-671.
-
(1978)
Genetics
, vol.90
, pp. 659-671
-
-
Apirion, D.1
-
22
-
-
0019476056
-
Inactivation of the ribonucleic acidprocessing enzyme ribonuclease E blocks cell division
-
Goldblum K, Apririon D. 1981. Inactivation of the ribonucleic acidprocessing enzyme ribonuclease E blocks cell division. J. Bacteriol. 146: 128-132.
-
(1981)
J. Bacteriol.
, vol.146
, pp. 128-132
-
-
Goldblum, K.1
Apririon, D.2
-
23
-
-
0036571060
-
Initiation of tRNA maturation by RNase E is essential for cell viability in E. coli
-
Ow MC, Kushner SR. 2002. Initiation of tRNA maturation by RNase E is essential for cell viability in E. coli. Genes Dev. 16:1102-1115.
-
(2002)
Genes Dev
, vol.16
, pp. 1102-1115
-
-
Ow, M.C.1
Kushner, S.R.2
-
24
-
-
1442325396
-
The function of RNase G in Escherichia coli is constrained by its amino and carboxyl termini
-
Deana A, Belasco JG. 2004. The function of RNase G in Escherichia coli is constrained by its amino and carboxyl termini. Mol. Microbiol. 51:1205-1217.
-
(2004)
Mol. Microbiol.
, vol.51
, pp. 1205-1217
-
-
Deana, A.1
Belasco, J.G.2
-
25
-
-
33745885282
-
RNase E maintenance of proper FtsZ/FtsA ratio required for nonfilamentous growth of Escherichia coli cells but not for colonyforming ability
-
Tamura M, Lee K, Miller CA, Moore CJ, Shirako Y, Kobayashi M, Cohen SN. 2006. RNase E maintenance of proper FtsZ/FtsA ratio required for nonfilamentous growth of Escherichia coli cells but not for colonyforming ability. J. Bacteriol. 188:5145-5152.
-
(2006)
J. Bacteriol.
, vol.188
, pp. 5145-5152
-
-
Tamura, M.1
Lee, K.2
Miller, C.A.3
Moore, C.J.4
Shirako, Y.5
Kobayashi, M.6
Cohen, S.N.7
-
26
-
-
84861206443
-
Second-site suppression of RNase E essentiality by mutation of the deaD RNA helicase in Escherichia coli
-
Tamura M, Kers JA, Cohen SN. 2012. Second-site suppression of RNase E essentiality by mutation of the deaD RNA helicase in Escherichia coli. J. Bacteriol. 194:1919 -1926.
-
(2012)
J. Bacteriol.
, vol.194
, pp. 1919-1926
-
-
Tamura, M.1
Kers, J.A.2
Cohen, S.N.3
-
27
-
-
77953636824
-
Single amino acid changes in the predicted RNaseHdomain of Escherichia coli RNase G lead to complementation of RNase E deletion mutants
-
Chung DH, Min Z, Wang BC, Kushner SR. 2010. Single amino acid changes in the predicted RNaseHdomain of Escherichia coli RNase G lead to complementation of RNase E deletion mutants. RNA 16:1371-1385.
-
(2010)
RNA
, vol.16
, pp. 1371-1385
-
-
Chung, D.H.1
Min, Z.2
Wang, B.C.3
Kushner, S.R.4
-
28
-
-
0025733344
-
deaD, a new Escherichia coli gene encoding a presumed ATP-dependent RNA helicase, can suppress a mutation in rpsB, the gene encoding ribosomal protein S2
-
Toone WM, Rudd KE, Friesen JD. 1991. deaD, a new Escherichia coli gene encoding a presumed ATP-dependent RNA helicase, can suppress a mutation in rpsB, the gene encoding ribosomal protein S2. J. Bacteriol. 173: 3291-3302.
-
(1991)
J. Bacteriol.
, vol.173
, pp. 3291-3302
-
-
Toone, W.M.1
Rudd, K.E.2
Friesen, J.D.3
-
29
-
-
33646568438
-
Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research
-
Kitagawa M, Ara T, Arifuzzaman M, Ioka-Nakamichi T, Inamoto E, Toyonaga H, Mori H. 2005. Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12:291-299.
-
(2005)
DNA Res
, vol.12
, pp. 291-299
-
-
Kitagawa, M.1
Ara, T.2
Arifuzzaman, M.3
Ioka-Nakamichi, T.4
Inamoto, E.5
Toyonaga, H.6
Mori, H.7
-
31
-
-
17644375240
-
The PEP-pyruvate-oxaloacetate node as the switch point for carbon flux distribution in bacteria
-
Sauer U, Eikmanns BJ. 2005. The PEP-pyruvate-oxaloacetate node as the switch point for carbon flux distribution in bacteria. FEMS Microbiol. Rev. 29:765-794.
-
(2005)
FEMS Microbiol. Rev.
, vol.29
, pp. 765-794
-
-
Sauer, U.1
Eikmanns, B.J.2
-
32
-
-
0027426767
-
Control of gluconeogenic growth by pps and pck in Escherichia coli
-
Chao YP, Patnaik R, Roof WD, Young RF, Liao JC. 1993. Control of gluconeogenic growth by pps and pck in Escherichia coli. J. Bacteriol. 175: 6939-6944.
-
(1993)
J. Bacteriol.
, vol.175
, pp. 6939-6944
-
-
Chao, Y.P.1
Patnaik, R.2
Roof, W.D.3
Young, R.F.4
Liao, J.C.5
-
34
-
-
0015240433
-
The purification and characterization of Escherichia coli enolase
-
Spring TG, Wold F. 1971. The purification and characterization of Escherichia coli enolase. J. Biol. Chem. 246:6797-6802.
-
(1971)
J. Biol. Chem.
, vol.246
, pp. 6797-6802
-
-
Spring, T.G.1
Wold, F.2
-
35
-
-
3242802943
-
Studies of the RNA degradosome-organizing domain of the Escherichia coli ribonuclease RNase E
-
Callaghan AJ, Aurikko JP, Ilag LL, Gunter Grossmann J, Chandran V, Kuhnel K, Poljak L, Carpousis AJ, Robinson CB, Symmons MF, Luisi BF. 2004. Studies of the RNA degradosome-organizing domain of the Escherichia coli ribonuclease RNase E. J. Mol. Biol. 340:965-979.
-
(2004)
J. Mol. Biol.
, vol.340
, pp. 965-979
-
-
Callaghan, A.J.1
Aurikko, J.P.2
Ilag, L.L.3
Gunter Grossmann, J.4
Chandran, V.5
Kuhnel, K.6
Poljak, L.7
Carpousis, A.J.8
Robinson, C.B.9
Symmons, M.F.10
Luisi, B.F.11
-
36
-
-
0042665928
-
RNase G of Escherichia coli exhibits only limited functional overlap with its essential homologue
-
Ow MC, Perwez T, Kushner SR. 2003. RNase G of Escherichia coli exhibits only limited functional overlap with its essential homologue, RNase E. Mol. Microbiol. 49:607-622.
-
(2003)
RNase E. Mol. Microbiol.
, vol.49
, pp. 607-622
-
-
Ow, M.C.1
Perwez, T.2
Kushner, S.R.3
-
37
-
-
0031020242
-
Functional relationship between Escherichia coli RNase E and the CafA protein
-
Wachi M, Umitsuki G, Nagai K. 1997. Functional relationship between Escherichia coli RNase E and the CafA protein. Mol. Gen. Genet. 253:515-519.
-
(1997)
Mol. Gen. Genet.
, vol.253
, pp. 515-519
-
-
Wachi, M.1
Umitsuki, G.2
Nagai, K.3
-
38
-
-
31544450286
-
Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection
-
2006.0008
-
Baba T, Ara T, Hasegawa M, Takai Y, Okumura Y, Baba M, Datsenko KA, Tomita M, Wanner BL, Mori H. 2006. Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2:2006.0008.
-
(2006)
Mol. Syst. Biol.
, vol.2
-
-
Baba, T.1
Ara, T.2
Hasegawa, M.3
Takai, Y.4
Okumura, Y.5
Baba, M.6
Datsenko, K.A.7
Tomita, M.8
Wanner, B.L.9
Mori, H.10
-
39
-
-
35848947748
-
Why metabolic enzymes are essential or nonessential for growth of Escherichia coli K12 on glucose
-
Kim J, Copley SD. 2007. Why metabolic enzymes are essential or nonessential for growth of Escherichia coli K12 on glucose. Biochemistry 46: 12501-12511.
-
(2007)
Biochemistry
, vol.46
, pp. 12501-12511
-
-
Kim, J.1
Copley, S.D.2
-
40
-
-
0041335300
-
Physiological studies of Escherichia coli strain MG1655: growth defects and apparent cross-regulation of gene expression
-
Soupene E, van Heeswijk WC, Plumbridge J, Stewart V, Bertenthal D, Lee H, Prasad G, Paliy O, Charernnoppakul P, Kustu S. 2003. Physiological studies of Escherichia coli strain MG1655: growth defects and apparent cross-regulation of gene expression. J. Bacteriol. 185:5611-5626.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 5611-5626
-
-
Soupene, E.1
van Heeswijk, W.C.2
Plumbridge, J.3
Stewart, V.4
Bertenthal, D.5
Lee, H.6
Prasad, G.7
Paliy, O.8
Charernnoppakul, P.9
Kustu, S.10
-
41
-
-
0035968201
-
Effects of 3' terminus modifications on mRNA functional decay during in vitro protein synthesis
-
Lee K, Cohen SN. 2001. Effects of 3' terminus modifications on mRNA functional decay during in vitro protein synthesis. J. Biol. Chem. 276: 23268-23274.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 23268-23274
-
-
Lee, K.1
Cohen, S.N.2
-
42
-
-
0017807890
-
Construction and characterization of amplifiable multicopy DNA cloning vehicles derived from the P15A cryptic miniplasmid
-
Chang AC, Cohen SN. 1978. Construction and characterization of amplifiable multicopy DNA cloning vehicles derived from the P15A cryptic miniplasmid. J. Bacteriol. 134:1141-1156.
-
(1978)
J. Bacteriol.
, vol.134
, pp. 1141-1156
-
-
Chang, A.C.1
Cohen, S.N.2
|