Latent biochemical relationships in the blood-milk metabolic axis of dairy cows revealed by statistical integration of 1H NMR spectroscopic data

Journal of Proteome Research

Volumn 12, Issue 3, 2013, Pages 1428-1435

  Maher, Anthony D ^a   Hayes, Benjamin ^a,b,c   Cocks, Benjamin ^a,b,c   Marett, Leah ^d   Wales, William J ^d   Rochfort, Simone J ^a,b,c  

^a Biosciences Research Division   (Australia)

^b Dairy Futures Cooperative Research Centre   (Australia)

^c LA TROBE UNIVERSITY   (Australia)

^d Department of Environment and Primary Industries   (Australia)

Author keywords

bovine; dairy; metabolomics; metabonomics; milk; nuclear magnetic resonance (NMR); partial least squares regression (PLS); statistical heterospectroscopy (SHY)

Indexed keywords

AMINO ACID; DIMETHYL SULFONE; TRIMETHYLAMINE; VALINE;

AMINO ACID METABOLISM; ARTICLE; BLOOD MILK METABOLIC AXIS; BLOOD SAMPLING; CONTROLLED STUDY; DAIRY CATTLE; FAT CONTENT; HEALTH STATUS; LACTATION; MAMMARY GLAND; METABOLITE; METABOLOMICS; MILK; NONHUMAN; PHENOTYPE; PLASMA; PRIORITY JOURNAL; PROTEIN CONTENT; PROTEIN DEGRADATION; PROTON NUCLEAR MAGNETIC RESONANCE; STATISTICAL HETEROSPECTROSCOPY;

EID: 84874632376     PISSN: 15353893     EISSN: 15353907     Source Type: Journal    
DOI: 10.1021/pr301056q     Document Type: Article

References (26)

1. Linzell, J. L.; Peaker, M. Mechanism of Milk Secretion Physiol. Rev. 1971, 51 (3) 564-597
2. Shennan, D. B.; Peaker, M. Transport of milk constituents by the mammary gland Physiol. Rev. 2000, 80 (3) 925-951
3. Fonville, J. M.; Richards, S. E.; Barton, R. H.; Boulange, C. L.; Ebbels, T. M. D.; Nicholson, J. K.; Holmes, E.; Dumas, M.-E. The evolution of partial least squares models and related chemometric approaches in metabonomics and metabolic phenotyping J. Chemom. 2010, 24 (11-12) 636-649
4. Fiehn, O. Metabolomics-The link between genotypes and phenotypes Plant Mol. Biol. 2002, 48 (1-2) 155-171
5. Nicholson, J. K.; Connelly, J.; Lindon, J. C.; Holmes, E. Metabonomics: A platform for studying drug toxicity and gene function Nat. Rev. Drug Discovery 2002, 1 (2) 153-161
6. 1H NMR-based metabonomic urinalysis Chem. Res. Toxicol. 2002, 15 (11) 1380-1386
7. 1H NMR data sets Anal. Chem. 2005, 77 (5) 1282-1289
8. Crockford, D. J.; Holmes, E.; Lindon, J. C.; Plumb, R. S.; Zirah, S.; Bruce, S. J.; Rainville, P.; Stumpf, C. L.; Nicholson, J. K. Statistical heterospectroscopy, an approach to the integrated analysis of NMR and UPLC-MS data sets: application in metabonomic toxicology studies Anal. Chem. 2006, 78 (2) 363-371
9. 1H NMR and UPLC-MS(E) statistical heterospectroscopy: characterization of drug metabolites (xenometabolome) in epidemiological studies Anal. Chem. 2008, 80 (18) 6835-6844
10. 1H NMR and MRS data from different biofluids and tissues enhances recovery of biological information from individuals with HIV-1 infection J. Proteome Res. 2011, 10 (4) 1737-1745
11. Boudonck, K. J.; Mitchell, M. W.; Wulff, J.; Ryals, J. A. Characterization of the biochemical variability of bovine milk using metabolomics Metabolomics 2009, 5 (4) 375-386
12. Klein, M. S.; Almstetter, M. F.; Schlamberger, G.; Nurnberger, N.; Dettmer, K.; Oefner, P. J.; Meyer, H. H.; Wiedemann, S.; Gronwald, W. Nuclear magnetic resonance and mass spectrometry-based milk metabolomics in dairy cows during early and late lactation J. Dairy Sci. 2010, 93 (4) 1539-1550
13. Sundekilde, U. K.; Frederiksen, P. D.; Clausen, M. R.; Larsen, L. B.; Bertram, H. C. Relationship between the metabolite profile and technological properties of bovine milk from two dairy breeds elucidated by NMR-based metabolomics J. Agric. Food Chem. 2011, 59 (13) 7360-7367
14. Ilves, A.; Harzia, H.; Ling, K.; Ots, M.; Soomets, U.; Kilk, K. Alterations in milk and blood metabolomes during the first months of lactation in dairy cows J. Dairy Sci. 2012, 95 (10) 5788-5797
15. Williams, Y. J.; Pryce, J. E.; Grainger, C.; Wales, W. J.; Linden, N.; Porker, M.; Hayes, B. J. Variation in residual feed intake in Holstein-Friesian dairy heifers in southern Australia J. Dairy Sci. 2011, 94 (9) 4715-4725
16. Tomasi, G.; van den Berg, F.; Andersson, C. Correlation optimized warping and dynamic time warping as preprocessing methods for chromatographic data J. Chemom. 2004, 18 (5) 231-241
17. 1H NMR metabonomics Anal. Chem. 2006, 78 (13) 4281-4290
18. Geladi, P.; Kowalski, B. R. Partial least-squares regression: a tutorial Anal. Chim. Acta 1986, 185, 1-17
19. 1H NMR spectroscopic metabonomic studies Anal. Chem. 2005, 77 (2) 517-526
20. Maher, A. D.; Cloarec, O.; Patki, P.; Craggs, M.; Holmes, E.; Lindon, J. C.; Nicholson, J. K. Dynamic biochemical information recovery in spontaneous human seminal fluid reactions via 1H NMR kinetic statistical total correlation spectroscopy Anal. Chem. 2009, 81 (1) 288-295
21. 13C NMR spectroscopy of human blood plasma Anal. Chem. 1995, 67 (5) 793-811
22. Indyk, H. E.; Woollard, D. C. Determination of orotic acid, uric acid, and creatinine in milk by liquid chromatography J. AOAC Int. 2004, 87 (1) 116-122
23. 13C NMR NMR Biomed. 2005, 18 (5) 331-336
24. Trottier, N. L.; Shipley, C. F.; Easter, R. A. Plasma amino acid uptake by the mammary gland of the lactating sow J. Anim. Sci. 1997, 75 (5) 1266-1278
25. Richert, B. T.; Goodband, R. D.; Tokach, M. D.; Nelssen, J. L. In vitro oxidation of branched chain amino acids by porcine mammary tissue Nutr. Res. 1998, 18 (5) 833-840
26. Pryce, J. E.; Arias, J.; Bowman, P. J.; Davis, S. R.; Macdonald, K. A.; Waghorn, G. C.; Wales, W. J.; Williams, Y. J.; Spelman, R. J.; Hayes, B. J. Accuracy of genomic predictions of residual feed intake and 250-day body weight in growing heifers using 625,000 single nucleotide polymorphism markers J. Dairy Sci. 2012, 95 (4) 2108-2119