메뉴 건너뛰기




Volumn 8, Issue 3, 2013, Pages

H2A.Z Nucleosome Positioning Has No Impact on Genetic Variation in Drosophila Genome

Author keywords

[No Author keywords available]

Indexed keywords

HISTONE H2AZ; UNTRANSLATED RNA; HISTONE; HISTONE H2A.F-Z; NUCLEOSOME;

EID: 84874584822     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0058295     Document Type: Article
Times cited : (1)

References (34)
  • 1
    • 1842411320 scopus 로고    scopus 로고
    • Crystal structure of the nucleosome core particle at 2.8 A resolution
    • Luger K, Mader AW, Richmond RK, Sargent DF, Richmond TJ, (1997) Crystal structure of the nucleosome core particle at 2.8 A resolution. Nature 389: 251-260.
    • (1997) Nature , vol.389 , pp. 251-260
    • Luger, K.1    Mader, A.W.2    Richmond, R.K.3    Sargent, D.F.4    Richmond, T.J.5
  • 2
    • 0037992395 scopus 로고    scopus 로고
    • The structure of DNA in the nucleosome core
    • Richmond TJ, Davey CA, (2003) The structure of DNA in the nucleosome core. Nature 423: 145-150.
    • (2003) Nature , vol.423 , pp. 145-150
    • Richmond, T.J.1    Davey, C.A.2
  • 3
    • 60349089645 scopus 로고    scopus 로고
    • Nucleosome positioning and gene regulation: advances through genomics
    • Jiang C, Pugh BF, (2009) Nucleosome positioning and gene regulation: advances through genomics. Nat Rev Genet 10: 161-172.
    • (2009) Nat Rev Genet , vol.10 , pp. 161-172
    • Jiang, C.1    Pugh, B.F.2
  • 4
    • 69949132191 scopus 로고    scopus 로고
    • Chromatin organization marks exon-intron structure
    • Schwartz S, Meshorer E, Ast G, (2009) Chromatin organization marks exon-intron structure. Nat Struct Mol Biol 16: 990-995.
    • (2009) Nat Struct Mol Biol , vol.16 , pp. 990-995
    • Schwartz, S.1    Meshorer, E.2    Ast, G.3
  • 6
    • 77954684922 scopus 로고    scopus 로고
    • From chromatin to splicing: RNA-processing as a total artwork
    • Tilgner H, Guigo R (2010) From chromatin to splicing: RNA-processing as a total artwork. Epigenetics 5.
    • (2010) Epigenetics , vol.5
    • Tilgner, H.1    Guigo, R.2
  • 7
    • 78049415820 scopus 로고    scopus 로고
    • Diversity of eukaryotic DNA replication origins revealed by genome-wide analysis of chromatin structure
    • Berbenetz NM, Nislow C, Brown GW (2010) Diversity of eukaryotic DNA replication origins revealed by genome-wide analysis of chromatin structure. PLoS Genet 6.
    • (2010) PLoS Genet , vol.6
    • Berbenetz, N.M.1    Nislow, C.2    Brown, G.W.3
  • 8
    • 77956202908 scopus 로고    scopus 로고
    • UV damage in DNA promotes nucleosome unwrapping
    • Duan MR, Smerdon MJ, (2010) UV damage in DNA promotes nucleosome unwrapping. J Biol Chem 285: 26295-26303.
    • (2010) J Biol Chem , vol.285 , pp. 26295-26303
    • Duan, M.R.1    Smerdon, M.J.2
  • 9
    • 22744432660 scopus 로고    scopus 로고
    • Genome-scale identification of nucleosome positions in S. cerevisiae
    • Yuan GC, Liu YJ, Dion MF, Slack MD, Wu LF, et al. (2005) Genome-scale identification of nucleosome positions in S. cerevisiae. Science 309: 626-630.
    • (2005) Science , vol.309 , pp. 626-630
    • Yuan, G.C.1    Liu, Y.J.2    Dion, M.F.3    Slack, M.D.4    Wu, L.F.5
  • 10
    • 57149119464 scopus 로고    scopus 로고
    • Distinct modes of regulation by chromatin encoded through nucleosome positioning signals
    • Field Y, Kaplan N, Fondufe-Mittendorf Y, Moore IK, Sharon E, et al. (2008) Distinct modes of regulation by chromatin encoded through nucleosome positioning signals. PLoS Comput Biol 4: e1000216.
    • (2008) PLoS Comput Biol , vol.4
    • Field, Y.1    Kaplan, N.2    Fondufe-Mittendorf, Y.3    Moore, I.K.4    Sharon, E.5
  • 11
    • 43749098767 scopus 로고    scopus 로고
    • Prediction and analysis of nucleosome exclusion regions in the human genome
    • Radwan A, Younis A, Luykx P, Khuri S, (2008) Prediction and analysis of nucleosome exclusion regions in the human genome. BMC Genomics 9: 186.
    • (2008) BMC Genomics , vol.9 , pp. 186
    • Radwan, A.1    Younis, A.2    Luykx, P.3    Khuri, S.4
  • 12
    • 0034999881 scopus 로고    scopus 로고
    • Poly(dA-dT) promoter elements increase the equilibrium accessibility of nucleosomal DNA target sites
    • Anderson JD, Widom J, (2001) Poly(dA-dT) promoter elements increase the equilibrium accessibility of nucleosomal DNA target sites. Mol Cell Biol 21: 3830-3839.
    • (2001) Mol Cell Biol , vol.21 , pp. 3830-3839
    • Anderson, J.D.1    Widom, J.2
  • 13
    • 0026739088 scopus 로고
    • Evolutionary consequences of nonrandom damage and repair of chromatin domains
    • Boulikas T, (1992) Evolutionary consequences of nonrandom damage and repair of chromatin domains. J Mol Evol 35: 156-180.
    • (1992) J Mol Evol , vol.35 , pp. 156-180
    • Boulikas, T.1
  • 14
    • 0036301403 scopus 로고    scopus 로고
    • DNA-repair by photolyase reveals dynamic properties of nucleosome positioning in vivo
    • Suter B, Thoma F, (2002) DNA-repair by photolyase reveals dynamic properties of nucleosome positioning in vivo. J Mol Biol 319: 395-406.
    • (2002) J Mol Biol , vol.319 , pp. 395-406
    • Suter, B.1    Thoma, F.2
  • 15
    • 34047111213 scopus 로고    scopus 로고
    • Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome
    • Albert I, Mavrich TN, Tomsho LP, Qi J, Zanton SJ, et al. (2007) Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome. Nature 446: 572-576.
    • (2007) Nature , vol.446 , pp. 572-576
    • Albert, I.1    Mavrich, T.N.2    Tomsho, L.P.3    Qi, J.4    Zanton, S.J.5
  • 17
    • 39749145198 scopus 로고    scopus 로고
    • Dynamic regulation of nucleosome positioning in the human genome
    • Schones DE, Cui K, Cuddapah S, Roh TY, Barski A, et al. (2008) Dynamic regulation of nucleosome positioning in the human genome. Cell 132: 887-898.
    • (2008) Cell , vol.132 , pp. 887-898
    • Schones, D.E.1    Cui, K.2    Cuddapah, S.3    Roh, T.Y.4    Barski, A.5
  • 18
    • 46449103738 scopus 로고    scopus 로고
    • A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning
    • Valouev A, Ichikawa J, Tonthat T, Stuart J, Ranade S, et al. (2008) A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning. Genome Res 18: 1051-1063.
    • (2008) Genome Res , vol.18 , pp. 1051-1063
    • Valouev, A.1    Ichikawa, J.2    Tonthat, T.3    Stuart, J.4    Ranade, S.5
  • 19
    • 56649089682 scopus 로고    scopus 로고
    • Evolutionary footprints of nucleosome positions in yeast
    • Washietl S, Machne R, Goldman N, (2008) Evolutionary footprints of nucleosome positions in yeast. Trends Genet 24: 583-587.
    • (2008) Trends Genet , vol.24 , pp. 583-587
    • Washietl, S.1    Machne, R.2    Goldman, N.3
  • 20
    • 58449116917 scopus 로고    scopus 로고
    • Chromatin-associated periodicity in genetic variation downstream of transcriptional start sites
    • Sasaki S, Mello CC, Shimada A, Nakatani Y, Hashimoto S, et al. (2009) Chromatin-associated periodicity in genetic variation downstream of transcriptional start sites. Science 323: 401-404.
    • (2009) Science , vol.323 , pp. 401-404
    • Sasaki, S.1    Mello, C.C.2    Shimada, A.3    Nakatani, Y.4    Hashimoto, S.5
  • 22
    • 80555156662 scopus 로고    scopus 로고
    • Widespread signatures of recent selection linked to nucleosome positioning in the human lineage
    • Prendergast JG, Semple CA, (2011) Widespread signatures of recent selection linked to nucleosome positioning in the human lineage. Genome Res 21: 1777-1787.
    • (2011) Genome Res , vol.21 , pp. 1777-1787
    • Prendergast, J.G.1    Semple, C.A.2
  • 23
    • 47149117454 scopus 로고    scopus 로고
    • Evolution of genes and genomes on the Drosophila phylogeny
    • Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, et al. (2007) Evolution of genes and genomes on the Drosophila phylogeny. Nature 450: 203-218.
    • (2007) Nature , vol.450 , pp. 203-218
    • Clark, A.G.1    Eisen, M.B.2    Smith, D.R.3    Bergman, C.M.4    Oliver, B.5
  • 24
    • 0035725036 scopus 로고    scopus 로고
    • H2A.Z is required for global chromatin integrity and for recruitment of RNA polymerase II under specific conditions
    • Adam M, Robert F, Larochelle M, Gaudreau L, (2001) H2A.Z is required for global chromatin integrity and for recruitment of RNA polymerase II under specific conditions. Mol Cell Biol 21: 6270-6279.
    • (2001) Mol Cell Biol , vol.21 , pp. 6270-6279
    • Adam, M.1    Robert, F.2    Larochelle, M.3    Gaudreau, L.4
  • 25
  • 26
    • 0033555906 scopus 로고    scopus 로고
    • Tandem repeats finder: a program to analyze DNA sequences
    • Benson G, (1999) Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res 27: 573-580.
    • (1999) Nucleic Acids Res , vol.27 , pp. 573-580
    • Benson, G.1
  • 27
    • 66349113764 scopus 로고    scopus 로고
    • Unstable tandem repeats in promoters confer transcriptional evolvability
    • Vinces MD, Legendre M, Caldara M, Hagihara M, Verstrepen KJ, (2009) Unstable tandem repeats in promoters confer transcriptional evolvability. Science 324: 1213-1216.
    • (2009) Science , vol.324 , pp. 1213-1216
    • Vinces, M.D.1    Legendre, M.2    Caldara, M.3    Hagihara, M.4    Verstrepen, K.J.5
  • 29
    • 33750704608 scopus 로고    scopus 로고
    • Five repair pathways in one context: chromatin modification during DNA repair
    • Ataian Y, Krebs JE, (2006) Five repair pathways in one context: chromatin modification during DNA repair. Biochem Cell Biol 84: 490-504.
    • (2006) Biochem Cell Biol , vol.84 , pp. 490-504
    • Ataian, Y.1    Krebs, J.E.2
  • 30
    • 0029974576 scopus 로고    scopus 로고
    • Nucleotide excision repair in yeast is mediated by sequential assembly of repair factors and not by a pre-assembled repairosome
    • Guzder SN, Sung P, Prakash L, Prakash S, (1996) Nucleotide excision repair in yeast is mediated by sequential assembly of repair factors and not by a pre-assembled repairosome. J Biol Chem 271: 8903-8910.
    • (1996) J Biol Chem , vol.271 , pp. 8903-8910
    • Guzder, S.N.1    Sung, P.2    Prakash, L.3    Prakash, S.4
  • 32
    • 21844442362 scopus 로고    scopus 로고
    • Repair of UV lesions in nucleosomes-intrinsic properties and remodeling
    • Thoma F, (2005) Repair of UV lesions in nucleosomes-intrinsic properties and remodeling. DNA Repair (Amst) 4: 855-869.
    • (2005) DNA Repair (Amst) , vol.4 , pp. 855-869
    • Thoma, F.1
  • 33
    • 0037934742 scopus 로고    scopus 로고
    • Suppressed catalytic activity of base excision repair enzymes on rotationally positioned uracil in nucleosomes
    • Beard BC, Wilson SH, Smerdon MJ, (2003) Suppressed catalytic activity of base excision repair enzymes on rotationally positioned uracil in nucleosomes. Proc Natl Acad Sci U S A 100: 7465-7470.
    • (2003) Proc Natl Acad Sci U S A , vol.100 , pp. 7465-7470
    • Beard, B.C.1    Wilson, S.H.2    Smerdon, M.J.3
  • 34
    • 0030964608 scopus 로고    scopus 로고
    • RNA polymerase II transcription inhibits DNA repair by photolyase in the transcribed strand of active yeast genes
    • Livingstone-Zatchej M, Meier A, Suter B, Thoma F, (1997) RNA polymerase II transcription inhibits DNA repair by photolyase in the transcribed strand of active yeast genes. Nucleic Acids Res 25: 3795-3800.
    • (1997) Nucleic Acids Res , vol.25 , pp. 3795-3800
    • Livingstone-Zatchej, M.1    Meier, A.2    Suter, B.3    Thoma, F.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.