Identification of germplasm with stacked QTL underlying seed traits in an inbred soybean population from cultivars Essex and Forrest

Molecular Breeding

Volumn 31, Issue 3, 2013, Pages 693-703

  Yesudas, C R ^a,b   Bashir, R ^a,c   Geisler, Matthew B ^a   Lightfoot, D A ^a  

^a SOUTHERN ILLINOIS UNIVERSITY   (United States)

^b PLANT BIOLOGY DIVISION   (United States)

^c SYNGENTA CROP PROTECTION   (United States)

Author keywords

Inbred lines; Oil; Protein; QTL; Seed size; Soybean

Indexed keywords

AMINO ACIDS; GENES; MAPPING; NITROGEN FIXATION; PLANTS (BOTANY); SOYBEAN OIL;

COPRODUCT; GERMPLASMS; INBRED LINE; LINKAGE GROUPS; OIL; QUANTITATIVE TRAIT LOCUS; SEED SIZE; SEED WEIGHT; SOYBEAN; SOYBEAN [GLYCINE MAX (L.) MERR.];

PROTEINS;

GLYCINE MAX;

EID: 84874564920     PISSN: 13803743     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11032-012-9827-3     Document Type: Article

References (39)

1. Afzal AJ, Saini N, Srour A, Hemmati N, El Shemy H, Lightfoot DA (2012) Recombination suppression at the rhg1 locus underlying nematode resistance. Theor Appl Genet 124: 1027-1039.
2. Basten CJ, Weir BS, Zeng ZB (1996) QTL cartographer. North Carolina State University, Raleigh.
3. Bolon YT, Joseph B, Cannon SB, Graham MA, Diers BW, Farmer AD, May GD, Muehlbauer GJ, Specht JE, Tu ZJ, Weeks N, Xu WW, Shoemaker RC, Vance CP (2010) Complementary genetic and genomic approaches help characterize the linkage group I seed protein QTL in soybean. BMC Plant Biol 10: 41-52.
4. Brummer EC, Graef GL, Orf J, Wilcox JR, Shoemaker RC (1997) Mapping QTL for seed protein and oil content in eight soy bean populations. Crop Sci 37: 370-378.
5. Chapman A, Pantalone VR, Ustun A, Allen FL, Landau-Ellis D, Trigiano RN, Gresshoff PM (2003) Quantitative trait loci for agronomic and seed quality traits in an F2 and F4: 6 soybean population. Euphytica 129: 387-393.
6. Chiari L, Piovesan ND, Naoe LK, Jose IC, Viana JMS, Moreira MA, De Barros EG (2004) Genetic parameters relating isoflavone and protein content in soybean seeds. Euphytica 138: 55-60.
7. Chung J, Babka HL, Graef GL, Staswick PE, Lee DJ, Cregan PB, Shoemaker RC, Specht JE (2003) The seed protein, oil, and yield QTL on soybean linkage group I. Crop Sci 43: 1053-1067.
8. Csanadi G, Vollmann J, Stift G, Lelly T (2001) Seed quality QTLs identified in a molecular map of early maturing soybean. Theor Appl Genet 103: 912-919.
9. Diers BW, Keim P, Fehr WR, Shoemaker RC (1992) RFLP analysis of soybean seed protein and oil content. Theor Appl Genet 83: 608-612.
10. Gao H, Bhattacharyya MK (2008) The soybean-Phytophthora resistance locus Rps1-k encompasses coiled coil-nucleotide binding-leucine rich repeat-like genes and repetitive sequences. BMC Plant Biol 8: 29-36.
11. Gizlice Z, Carter Jr TE, Gerig TM, Burton JW (1996) Genetic diversity patterns in North American public soybean cultivars based on coefficient of parentage. Crop Sci 36: 753-765.
12. Han Y, Teng W, Sun D, Du Y, Qiu L, Xu X, Li W (2008) Impact of epistasis and QTL × environment interaction on the accumulation of seed mass of soybean (Glycine max L. Merr.). Genet Res 90: 481-491.
13. Hyten DL, Pantalone VR, Sams CE, Saxton AM, Landau-Ellis D, Stefaniak TR, Schmidt ME (2004) Seed quality in a prominent soybean population. Theor Appl Genet 109: 552-556.
14. Jones BJ (1991) Kjeldahl method for nitrogen determination. Micro-Macro Publishing, Athens.
15. Kassem MA, Shultz J, Meksem K, Cho Y, Wood AJ, Iqbal MJ, Lightfoot DA (2006) An updated 'Essex' by 'Forrest' linkage map and first composite interval map of QTL underlying six soybean traits. Theor Appl Genet 113: 1015-1026.
16. Kim S-L, Berhow MA, Kim JT, Chi H-Y, Lee S-J, Chung I-M (2006) Evaluation of soya saponin, isoflavone, protein, lipid, and free sugar accumulation in developing soybean seeds. J Agric Food Chem 54: 10003-10010.
17. Lander ES, Green P, Abrahamson J, Barlow A, Daly MJ, Lincoln SE, Newburg L (1987) MAPMAKER: an interactive computer package for constructing primary genetic linkage map of experimental and natural populations. Genomics 1: 174-181.
18. Lee SH, Bailey MA, Mian MAR, Carter TE, Shipe ER, Ashley DA, Parrott WA, Hussey RS, Boerma HR (1996) RFLP loci associated with soybean seed protein and oil content across populations and locations. Theor Appl Genet 93: 649-657.
19. Li W, Sun D, Du Y, Chen Q, Zhang Z, Qiu L, Sun G (2007) Quantitative trait loci underlying the development of seed composition in soybean (Glycine max L. Merr.). Genome 50: 1067-1077.
20. Li H, Liu H, Han Y, Wu X, Teng W, Liu G, Li W (2010) Identification of QTL underlying vitamin E contents in soybean seed among multiple environments. Theor Appl Genet 120: 1405-1413.
21. Lightfoot DA (2008) Soybean genomics: developments through the use of cultivar Forrest. Int J Plant Genom 2008: 1-22.
22. Lightfoot DA, Njiti VN, Gibson PT, Kassem MA, Iqbal JM, Meksem K (2005) Registration of Essex × Forrest recombinant inbred line (RIL) mapping population. Crop Sci 45: 1678-1681.
23. Liu K (1997) Soybeans: chemistry, technology and utilization. Chapman & Hall, New York, p 279.
24. Luckew A, Lightfoot DA, Cianzio S (2013) Evaluating the usefulness of ten genomic regions associated with sudden death syndrome resistance in soybean. Theor Appl Genet (in press).
25. Mansur LM, Lark KG, Kross H, Oliveira A (1993) Interval mapping of quantitative trait loci for reproductive, morphological, and seed traits of soybean (Glycine max L.). Theor Appl Genet 86: 907-913.
26. Mansur LM, Orf JH, Chase K, Jarvik T, Cregan PB, Lark KG (1996) Genetic mapping of agronomic traits using recombinant inbred lines of soybean. Crop Sci 36: 1327-1336.
27. Orf JH, Chase K, Jarvik T, Mansur LM, Cregan PB, Adler FR, Lark KG (1999) Genetics of soybean agronomic traits: I. Comparison of three related recombinant inbred populations. Crop Sci 39: 1642-1651.
28. Palomeque L, Liu LJ, Li W, Hedges BR, Cober ER, Smid MP, Lukens L, Rajcan I (2010) Validation of mega-environment universal and specific QTL associated with seed yield and agronomic traits in soybeans. Theor Appl Genet 120: 997-1003.
29. Prabhu RR, Njiti VN, Johnson JE, Schmidt ME, Klein III RJ, Lightfoot DA (1999) Selecting soybean cultivars for dual resistance to cyst nematode Sudden Death Syndrome with two DNA markers. Crop Sci 39: 982-987.
30. Sebolt AM, Shoemaker RC, Diers BW (2000) Analysis of a quantitative trait locus allele from wild soybean that increases seed protein concentration in soybean. Crop Sci 40: 1438-1444.
31. Sun D, Li W, Zhang Z, Chen Q, Ning H, Qiu L, Sun G (2006) Quantitative trait loci analysis for the developmental behavior of Soybean (Glycine max L. Merr.). Theor Appl Genet 112: 665-673.
32. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25: 4876-4882.
33. Thorne JC, Fehr WR (1970) Incorporation of high-protein, exotic germplasm into soybean populations by 2- and 3-way crosses. Crop Sci 10: 652-655.
34. Ullah H, Jasim M, Lightfoot DA (2012) Using a minimum tile path for plant transformations encompassing the entire soybean genome. ATLAS J Plant Genom Sci 1(2): 31-38.
35. Vodkin LO, Khanna A, Shealy R, Clough SJ, Gonzalez DO, Philip R, Zabala G, Thibaud-Nissen F, Sidarous M, Stromvik MV, Shoop E, Schmidt C, Retzel E, Erpelding J, Shoemaker RC, Rodriguez-Huete AM, Polacco JC, Coryell V, Keim P, Gong G, Liu L, Pardinas J, Schweitzer P (2004) Microarrays for global expression constructed with a low redundancy set of 27, 500 sequenced cDNAs representing an array of developmental stages and physiological conditions of the soybean plant. BMC Genom 5: 73-83.
36. Yesudas CR (2008) Identification of loci underlying seed composition and foliar insect herbivory resistance in soybean. Thesis, SIUC, Carbondale, IL, USA pp 120.
37. Yesudas CR, Sharma H, Lightfoot DA (2010) Identification of loci underlying resistance to herbivory by Japanese Beetles in soybean. Theor Appl Genet 121: 353-362.
38. Yuan JZ, Njiti VN, Meksem K, Iqbal MJ, Triwitayakorn K, Kassem MA, Davis GT, Schmidt ME, Lightfoot DA (2002) Identification of yield loci in soybean populations that segregate for disease resistance. Crop Sci 42: 271-277.
39. Zhang WK, Wang YJ, Luo GZ, Zhang JS, He CY, Wu XL, Gai JY, Chen SY (2004) QTL mapping of ten agronomic traits on the soybean (Glycine max L. Merr.) genetic map and their association with EST markers. Theor Appl Genet 108: 1131-1139.