-
1
-
-
0036183076
-
Short-chain dehydrogenase/reductase (SDR) relationships: A large family with eight clusters common to human, animal, and plant genomes
-
Kallberg Y, Oppermann U, Jornvall H, &, Persson B, (2002) Short-chain dehydrogenase/reductase (SDR) relationships: a large family with eight clusters common to human, animal, and plant genomes. Protein Sci 11, 636-641.
-
(2002)
Protein Sci
, vol.11
, pp. 636-641
-
-
Kallberg, Y.1
Oppermann, U.2
Jornvall, H.3
Persson, B.4
-
2
-
-
77951719669
-
Classification of the short-chain dehydrogenase/reductase superfamily using hidden Markov models
-
Kallberg Y, Oppermann U, &, Persson B, (2010) Classification of the short-chain dehydrogenase/reductase superfamily using hidden Markov models. FEBS J 277, 2375-2386.
-
(2010)
FEBS J
, vol.277
, pp. 2375-2386
-
-
Kallberg, Y.1
Oppermann, U.2
Persson, B.3
-
3
-
-
0042858150
-
The negative transcriptional regulator NmrA discriminates between oxidized and reduced dinucleotides
-
Lamb HK, Leslie K, Dodds AL, Nutley M, Cooper A, Johnson C, Thompson P, Stammers DK, &, Hawkins AR, (2003) The negative transcriptional regulator NmrA discriminates between oxidized and reduced dinucleotides. J Biol Chem 278, 32107-32114.
-
(2003)
J Biol Chem
, vol.278
, pp. 32107-32114
-
-
Lamb, H.K.1
Leslie, K.2
Dodds, A.L.3
Nutley, M.4
Cooper, A.5
Johnson, C.6
Thompson, P.7
Stammers, D.K.8
Hawkins, A.R.9
-
4
-
-
58149133711
-
Medium- and short-chain dehydrogenase/reductase gene and protein families: The SDR superfamily: Functional and structural diversity within a family of metabolic and regulatory enzymes
-
Kavanagh KL, Jornvall H, Persson B, &, Oppermann U, (2008) Medium- and short-chain dehydrogenase/reductase gene and protein families: the SDR superfamily: functional and structural diversity within a family of metabolic and regulatory enzymes. Cell Mol Life Sci 65, 3895-3906.
-
(2008)
Cell Mol Life Sci
, vol.65
, pp. 3895-3906
-
-
Kavanagh, K.L.1
Jornvall, H.2
Persson, B.3
Oppermann, U.4
-
5
-
-
0035969860
-
Forms and functions of human SDR enzymes
-
Oppermann UC, Filling C, &, Jornvall H, (2001) Forms and functions of human SDR enzymes. Chem Biol Interact 130-132, 699-705.
-
(2001)
Chem Biol Interact
, vol.130-132
, pp. 699-705
-
-
Oppermann, U.C.1
Filling, C.2
Jornvall, H.3
-
6
-
-
38949097460
-
Inhibitors of FabI, an enzyme drug target in the bacterial fatty acid biosynthesis pathway
-
Lu H, &, Tonge PJ, (2008) Inhibitors of FabI, an enzyme drug target in the bacterial fatty acid biosynthesis pathway. Acc Chem Res 41, 11-20.
-
(2008)
Acc Chem Res
, vol.41
, pp. 11-20
-
-
Lu, H.1
Tonge, P.J.2
-
7
-
-
0032472224
-
Modification of the NADH of the isoniazid target (InhA) from Mycobacterium tuberculosis
-
Rozwarski DA, Grant GA, Barton DH, Jacobs WR Jr, &, Sacchettini JC, (1998) Modification of the NADH of the isoniazid target (InhA) from Mycobacterium tuberculosis. Science 279, 98-102.
-
(1998)
Science
, vol.279
, pp. 98-102
-
-
Rozwarski, D.A.1
Grant, G.A.2
Barton, D.H.3
Jacobs, Jr.W.R.4
Sacchettini, J.C.5
-
8
-
-
0037067783
-
Critical residues for structure and catalysis in short-chain dehydrogenases/reductases
-
Filling C, Berndt KD, Benach J, Knapp S, Prozorovski T, Nordling E, Ladenstein R, Jornvall H, &, Oppermann U, (2002) Critical residues for structure and catalysis in short-chain dehydrogenases/reductases. J Biol Chem 277, 25677-25684.
-
(2002)
J Biol Chem
, vol.277
, pp. 25677-25684
-
-
Filling, C.1
Berndt, K.D.2
Benach, J.3
Knapp, S.4
Prozorovski, T.5
Nordling, E.6
Ladenstein, R.7
Jornvall, H.8
Oppermann, U.9
-
9
-
-
33644766172
-
Prediction of coenzyme specificity in dehydrogenases/reductases. A hidden Markov model-based method and its application on complete genomes
-
Kallberg Y, &, Persson B, (2006) Prediction of coenzyme specificity in dehydrogenases/reductases. A hidden Markov model-based method and its application on complete genomes. FEBS J 273, 1177-1184.
-
(2006)
FEBS J
, vol.273
, pp. 1177-1184
-
-
Kallberg, Y.1
Persson, B.2
-
10
-
-
0028990098
-
Short-chain dehydrogenases/reductases (SDR)
-
Jornvall H, Persson B, Krook M, Atrian S, Gonzalez-Duarte R, Jeffery J, &, Ghosh D, (1995) Short-chain dehydrogenases/reductases (SDR). Biochemistry 34, 6003-6013.
-
(1995)
Biochemistry
, vol.34
, pp. 6003-6013
-
-
Jornvall, H.1
Persson, B.2
Krook, M.3
Atrian, S.4
Gonzalez-Duarte, R.5
Jeffery, J.6
Ghosh, D.7
-
11
-
-
13644269467
-
Mechanistic roles of Ser-114, Tyr-155, and Lys-159 in 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase from Comamonas testosteroni
-
Hwang CC, Chang YH, Hsu CN, Hsu HH, Li CW, &, Pon HI, (2005) Mechanistic roles of Ser-114, Tyr-155, and Lys-159 in 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase from Comamonas testosteroni. J Biol Chem 280, 3522-3528.
-
(2005)
J Biol Chem
, vol.280
, pp. 3522-3528
-
-
Hwang, C.C.1
Chang, Y.H.2
Hsu, C.N.3
Hsu, H.H.4
Li, C.W.5
Pon, H.I.6
-
12
-
-
1542602992
-
Cofactor-induced conformational rearrangements establish a catalytically competent active site and a proton relay conduit in FabG
-
Price AC, Zhang YM, Rock CO, &, White SW, (2004) Cofactor-induced conformational rearrangements establish a catalytically competent active site and a proton relay conduit in FabG. Structure 12, 417-428.
-
(2004)
Structure
, vol.12
, pp. 417-428
-
-
Price, A.C.1
Zhang, Y.M.2
Rock, C.O.3
White, S.W.4
-
13
-
-
65449185894
-
Vibrio vulnificus: Disease and pathogenesis
-
Jones MK, &, Oliver JD, (2009) Vibrio vulnificus: disease and pathogenesis. Infect Immun 77, 1723-1733.
-
(2009)
Infect Immun
, vol.77
, pp. 1723-1733
-
-
Jones, M.K.1
Oliver, J.D.2
-
14
-
-
84055178177
-
Insights into subtle conformational differences in the substrate-binding loop of fungal 17beta-hydroxysteroid dehydrogenase: A combined structural and kinetic approach
-
Cassetta A, Krastanova I, Kristan K, Brunskole Svegelj M, Lamba D, Lanisnik Rizner T, &, Stojan J, (2011) Insights into subtle conformational differences in the substrate-binding loop of fungal 17beta-hydroxysteroid dehydrogenase: a combined structural and kinetic approach. Biochem J 441, 151-160.
-
(2011)
Biochem J
, vol.441
, pp. 151-160
-
-
Cassetta, A.1
Krastanova, I.2
Kristan, K.3
Brunskole Svegelj, M.4
Lamba, D.5
Lanisnik Rizner, T.6
Stojan, J.7
-
15
-
-
23044512226
-
Ligand-induced fit in mycobacterial MabA: The sequence-specific C-terminus locks the conformational change
-
Cohen-Gonsaud M, Ducasse-Cabanot S, Quemard A, &, Labesse G, (2005) Ligand-induced fit in mycobacterial MabA: the sequence-specific C-terminus locks the conformational change. Proteins 60, 392-400.
-
(2005)
Proteins
, vol.60
, pp. 392-400
-
-
Cohen-Gonsaud, M.1
Ducasse-Cabanot, S.2
Quemard, A.3
Labesse, G.4
-
16
-
-
37249005205
-
The use of differential scanning fluorimetry to detect ligand inte ractions that promote protein stability
-
Niesen FH, Berglund H, &, Vedadi M, (2007) The use of differential scanning fluorimetry to detect ligand inte ractions that promote protein stability. Nat Protoc 2, 2212-2221.
-
(2007)
Nat Protoc
, vol.2
, pp. 2212-2221
-
-
Niesen, F.H.1
Berglund, H.2
Vedadi, M.3
-
17
-
-
0030064483
-
Fluorescence-energy transfer in human estradiol 17 beta-dehydrogenase- NADPH complex and studies on the coenzyme binding
-
Li B, &, Lin SX, (1996) Fluorescence-energy transfer in human estradiol 17 beta-dehydrogenase-NADPH complex and studies on the coenzyme binding. Eur J Biochem 235, 180-186.
-
(1996)
Eur J Biochem
, vol.235
, pp. 180-186
-
-
Li, B.1
Lin, S.X.2
-
18
-
-
4143080269
-
Fluorescent intensity of a novel NADPH-binding protein of Vibrio vulnificus can be improved by directed evolution
-
Chang CC, Chuang YC, &, Chang MC, (2004) Fluorescent intensity of a novel NADPH-binding protein of Vibrio vulnificus can be improved by directed evolution. Biochem Biophys Res Commun 322, 303-309.
-
(2004)
Biochem Biophys Res Commun
, vol.322
, pp. 303-309
-
-
Chang, C.C.1
Chuang, Y.C.2
Chang, M.C.3
-
19
-
-
34250641961
-
Isothermal titration calorimetry to determine association constants for high-affinity ligands
-
Velazquez-Campoy A, &, Freire E, (2006) Isothermal titration calorimetry to determine association constants for high-affinity ligands. Nat Protoc 1, 186-191.
-
(2006)
Nat Protoc
, vol.1
, pp. 186-191
-
-
Velazquez-Campoy, A.1
Freire, E.2
-
20
-
-
59049099290
-
Chinese hamster monomeric carbonyl reductases of the short-chain dehydrogenase/reductase superfamily
-
Miura T, Nishinaka T, Takama M, Murakami M, &, Terada T, (2009) Chinese hamster monomeric carbonyl reductases of the short-chain dehydrogenase/reductase superfamily. Chem Biol Interact 178, 110-116.
-
(2009)
Chem Biol Interact
, vol.178
, pp. 110-116
-
-
Miura, T.1
Nishinaka, T.2
Takama, M.3
Murakami, M.4
Terada, T.5
-
21
-
-
34249804156
-
Molecular modeling and site-directed mutagenesis reveal the benzylisoquinoline binding site of the short-chain dehydrogenase/reductase salutaridine reductase
-
Geissler R, Brandt W, &, Ziegler J, (2007) Molecular modeling and site-directed mutagenesis reveal the benzylisoquinoline binding site of the short-chain dehydrogenase/reductase salutaridine reductase. Plant Physiol 143, 1493-1503.
-
(2007)
Plant Physiol
, vol.143
, pp. 1493-1503
-
-
Geissler, R.1
Brandt, W.2
Ziegler, J.3
-
22
-
-
0035872216
-
Human oestrogenic 17beta-hydroxysteroid dehydrogenase specificity: Enzyme regulation through an NADPH-dependent substrate inhibition towards the highly specific oestrone reduction
-
Gangloff A, Garneau A, Huang YW, Yang F, &, Lin SX, (2001) Human oestrogenic 17beta-hydroxysteroid dehydrogenase specificity: enzyme regulation through an NADPH-dependent substrate inhibition towards the highly specific oestrone reduction. Biochem J 356, 269-276.
-
(2001)
Biochem J
, vol.356
, pp. 269-276
-
-
Gangloff, A.1
Garneau, A.2
Huang, Y.W.3
Yang, F.4
Lin, S.X.5
-
23
-
-
34247892395
-
A short-chain dehydrogenase/reductase from Vibrio vulnificus with both blue fluorescence and oxidoreductase activity
-
Polizzi KM, Moore DA, &, Bommarius AS, (2007) A short-chain dehydrogenase/reductase from Vibrio vulnificus with both blue fluorescence and oxidoreductase activity. Chem Commun (Camb) 18, 1843-1845.
-
(2007)
Chem Commun (Camb)
, vol.18
, pp. 1843-1845
-
-
Polizzi, K.M.1
Moore, D.A.2
Bommarius, A.S.3
-
24
-
-
84863442306
-
Crystallization of an atypical short-chain dehydrogenase from Vibrio vulnificus missing the conserved catalytic tetrad
-
Buysschaert G, Verstraete K, Savvides SN, &, Vergauwen B, (2012) Crystallization of an atypical short-chain dehydrogenase from Vibrio vulnificus missing the conserved catalytic tetrad. Acta Crystallogr F 68, 771-774.
-
(2012)
Acta Crystallogr F
, vol.68
, pp. 771-774
-
-
Buysschaert, G.1
Verstraete, K.2
Savvides, S.N.3
Vergauwen, B.4
-
25
-
-
0035022533
-
SDR structure, mechanism of action and substrate recognition
-
Tanaka N, Nonaka T, Nakamura KT, &, Hara A, (2001) SDR structure, mechanism of action and substrate recognition. Curr Org Chem 5, 89-111.
-
(2001)
Curr Org Chem
, vol.5
, pp. 89-111
-
-
Tanaka, N.1
Nonaka, T.2
Nakamura, K.T.3
Hara, A.4
-
26
-
-
35448992143
-
Cosubstrate-induced dynamics of D-3-hydroxybutyrate dehydrogenase from Pseudomonas putida
-
Paithankar KS, Feller C, Kuettner EB, Keim A, Grunow M, &, Strater N, (2007) Cosubstrate-induced dynamics of D-3-hydroxybutyrate dehydrogenase from Pseudomonas putida. FEBS J 274, 5767-5779.
-
(2007)
FEBS J
, vol.274
, pp. 5767-5779
-
-
Paithankar, K.S.1
Feller, C.2
Kuettner, E.B.3
Keim, A.4
Grunow, M.5
Strater, N.6
-
27
-
-
0035014839
-
Pteridine reductase mechanism correlates pterin metabolism with drug resistance in trypanosomatid parasites
-
Gourley DG, Schuttelkopf AW, Leonard GA, Luba J, Hardy LW, Beverley SM, &, Hunter WN, (2001) Pteridine reductase mechanism correlates pterin metabolism with drug resistance in trypanosomatid parasites. Nat Struct Biol 8, 521-525.
-
(2001)
Nat Struct Biol
, vol.8
, pp. 521-525
-
-
Gourley, D.G.1
Schuttelkopf, A.W.2
Leonard, G.A.3
Luba, J.4
Hardy, L.W.5
Beverley, S.M.6
Hunter, W.N.7
-
28
-
-
0025838697
-
Three-dimensional structure of holo 3 alpha,20 beta-hydroxysteroid dehydrogenase: A member of a short-chain dehydrogenase family
-
Ghosh D, Weeks CM, Grochulski P, Duax WL, Erman M, Rimsay RL, &, Orr JC, (1991) Three-dimensional structure of holo 3 alpha,20 beta-hydroxysteroid dehydrogenase: a member of a short-chain dehydrogenase family. Proc Natl Acad Sci USA 88, 10064-10068.
-
(1991)
Proc Natl Acad Sci USA
, vol.88
, pp. 10064-10068
-
-
Ghosh, D.1
Weeks, C.M.2
Grochulski, P.3
Duax, W.L.4
Erman, M.5
Rimsay, R.L.6
Orr, J.C.7
-
29
-
-
1942437384
-
Cofactor hydrogen bonding onto the protein main chain is conserved in the short chain dehydrogenase/reductase family and contributes to nicotinamide orientation
-
Shi R, &, Lin SX, (2004) Cofactor hydrogen bonding onto the protein main chain is conserved in the short chain dehydrogenase/reductase family and contributes to nicotinamide orientation. J Biol Chem 279, 16778-16785.
-
(2004)
J Biol Chem
, vol.279
, pp. 16778-16785
-
-
Shi, R.1
Lin, S.X.2
-
30
-
-
0028773899
-
Crystallographic study of coenzyme, coenzyme analogue and substrate binding in 6-phosphogluconate dehydrogenase: Implications for NADP specificity and the enzyme mechanism
-
Adams MJ, Ellis GH, Gover S, Naylor CE, &, Phillips C, (1994) Crystallographic study of coenzyme, coenzyme analogue and substrate binding in 6-phosphogluconate dehydrogenase: implications for NADP specificity and the enzyme mechanism. Structure 2, 651-668.
-
(1994)
Structure
, vol.2
, pp. 651-668
-
-
Adams, M.J.1
Ellis, G.H.2
Gover, S.3
Naylor, C.E.4
Phillips, C.5
-
31
-
-
0036299101
-
Crystal structure of MabA from Mycobacterium tuberculosis, a reductase involved in long-chain fatty acid biosynthesis
-
Cohen-Gonsaud M, Ducasse S, Hoh F, Zerbib D, Labesse G, &, Quemard A, (2002) Crystal structure of MabA from Mycobacterium tuberculosis, a reductase involved in long-chain fatty acid biosynthesis. J Mol Biol 320, 249-261.
-
(2002)
J Mol Biol
, vol.320
, pp. 249-261
-
-
Cohen-Gonsaud, M.1
Ducasse, S.2
Hoh, F.3
Zerbib, D.4
Labesse, G.5
Quemard, A.6
-
32
-
-
33747818007
-
CASTp: Computed atlas of surface topography of proteins with structural and topographical mapping of functionally annotated residues
-
Dundas J, Ouyang Z, Tseng J, Binkowski A, Turpaz Y, &, Liang J, (2006) CASTp: computed atlas of surface topography of proteins with structural and topographical mapping of functionally annotated residues. Nucleic Acids Res 34, W116-W118.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Dundas, J.1
Ouyang, Z.2
Tseng, J.3
Binkowski, A.4
Turpaz, Y.5
Liang, J.6
-
33
-
-
0019482543
-
Dihydrolipoamide dehydrogenase component of the pyruvate dehydrogenase complex from Escherichia coli K12. Comparative characterization of the free and the complex-bound component
-
Schmincke-Ott E, &, Bisswanger H, (1981) Dihydrolipoamide dehydrogenase component of the pyruvate dehydrogenase complex from Escherichia coli K12. Comparative characterization of the free and the complex-bound component. Eur J Biochem 114, 413-420.
-
(1981)
Eur J Biochem
, vol.114
, pp. 413-420
-
-
Schmincke-Ott, E.1
Bisswanger, H.2
-
34
-
-
0032438987
-
Hidden Markov models for detecting remote protein homologies
-
Karplus K, Barrett C, &, Hughey R, (1998) Hidden Markov models for detecting remote protein homologies. Bioinformatics 14, 846-856.
-
(1998)
Bioinformatics
, vol.14
, pp. 846-856
-
-
Karplus, K.1
Barrett, C.2
Hughey, R.3
-
35
-
-
0017184389
-
Rapid and sensitive method for quantitation of microgram quantities of protein utilizing principle of protein-dye binding
-
Bradford MM, (1976) Rapid and sensitive method for quantitation of microgram quantities of protein utilizing principle of protein-dye binding. Anal Biochem 72, 248-254.
-
(1976)
Anal Biochem
, vol.72
, pp. 248-254
-
-
Bradford, M.M.1
-
37
-
-
34447508216
-
Phaser crystallographic software
-
McCoy AJ, Grosse-Kunstleve RW, Adams PD, Winn MD, Storoni LC, &, Read RJ, (2007) Phaser crystallographic software. J Appl Crystallogr 40, 658-674.
-
(2007)
J Appl Crystallogr
, vol.40
, pp. 658-674
-
-
McCoy, A.J.1
Grosse-Kunstleve, R.W.2
Adams, P.D.3
Winn, M.D.4
Storoni, L.C.5
Read, R.J.6
-
38
-
-
43749083257
-
CHAINSAW: A program for mutating PDB files used as templates in molecular replacement
-
Stein N, (2008) CHAINSAW: a program for mutating PDB files used as templates in molecular replacement. J Appl Crystallogr 41, 641-643.
-
(2008)
J Appl Crystallogr
, vol.41
, pp. 641-643
-
-
Stein, N.1
-
39
-
-
76449098262
-
PHENIX: A comprehensive Python-based system for macromolecular structure solution
-
Adams PD, Afonine PV, Bunkoczi G, Chen VB, Davis IW, Echols N, Headd JJ, Hung LW, Kapral GJ, Grosse-Kunstleve RW, et al,. (2010) PHENIX: a comprehensive Python-based system for macromolecular structure solution. Acta Crystallogr D Biol Crystallogr 66, 213-221.
-
(2010)
Acta Crystallogr D Biol Crystallogr
, vol.66
, pp. 213-221
-
-
Adams, P.D.1
Afonine, P.V.2
Bunkoczi, G.3
Chen, V.B.4
Davis, I.W.5
Echols, N.6
Headd, J.J.7
Hung, L.W.8
Kapral, G.J.9
Grosse-Kunstleve, R.W.10
-
40
-
-
14844321328
-
Refinement of severely incomplete structures with maximum likelihood in BUSTER-TNT
-
Blanc E, Koversi P, Vonrhein C, Flensburg C, &, Lea S, (2004) Refinement of severely incomplete structures with maximum likelihood in BUSTER-TNT. Acta Crystallogr D Biol Crystallogr 60, 2210-2221.
-
(2004)
Acta Crystallogr D Biol Crystallogr
, vol.60
, pp. 2210-2221
-
-
Blanc, E.1
Koversi, P.2
Vonrhein, C.3
Flensburg, C.4
Lea, S.5
-
41
-
-
13244281317
-
Coot: Model-building tools for molecular graphics
-
Emsley P, &, Cowtan K, (2004) Coot: model-building tools for molecular graphics. Acta Crystallogr D Biol Crystallogr 60, 2126-2132.
-
(2004)
Acta Crystallogr D Biol Crystallogr
, vol.60
, pp. 2126-2132
-
-
Emsley, P.1
Cowtan, K.2
-
42
-
-
74549178560
-
MolProbity: All-atom structure validation for macromolecular crystallography
-
Chen VB, Arendall WB III, Headd JJ, Keedy DA, Immormino RM, Kapral GJ, Murray LW, Richardson JS, &, Richardson DC, (2010) MolProbity: all-atom structure validation for macromolecular crystallography. Acta Crystallogr D Biol Crystallogr 66, 12-21.
-
(2010)
Acta Crystallogr D Biol Crystallogr
, vol.66
, pp. 12-21
-
-
Chen, V.B.1
Arendall Iii, W.B.2
Headd, J.J.3
Keedy, D.A.4
Immormino, R.M.5
Kapral, G.J.6
Murray, L.W.7
Richardson, J.S.8
Richardson, D.C.9
|