-
1
-
-
13844291872
-
DNA sequence compression using the burrows wheeler transform
-
Stanford University, CA
-
Adjeroh, D., Zhang, Y., Mukherjee, A., Powell, M. and Bell, T. (2002) 'DNA sequence compression using the Burrows Wheeler Transform', Proceedings of IEEE Bioinformatics Conference, Stanford University, CA, p.303.
-
(2002)
Proceedings of IEEE Bioinformatics Conference
, pp. 303
-
-
Adjeroh, D.1
Zhang, Y.2
Mukherjee, A.3
Powell, M.4
Bell, T.5
-
2
-
-
0025183708
-
A basic local alignment search tool
-
Altschul, S., Gish, W., Miller, W., Myers, E. and Lipman, D. (1990) 'A basic local alignment search tool', Journal of Molecular Biology, Vol. 215, No. 3, pp.403-410.
-
(1990)
Journal of Molecular Biology
, vol.215
, Issue.3
, pp. 403-410
-
-
Altschul, S.1
Gish, W.2
Miller, W.3
Myers, E.4
Lipman, D.5
-
3
-
-
0016518897
-
Fast pattern matching: An aid to bibliographic search
-
Aho, A.V. and Corasick, M.J. (1975) 'Fast pattern matching: An aid to bibliographic search', Communications of the ACM, Vol. 18, No. 6, pp.333-340.
-
(1975)
Communications of the ACM
, vol.18
, Issue.6
, pp. 333-340
-
-
Aho, A.V.1
Corasick, M.J.2
-
4
-
-
84976680267
-
A new approach to text searching
-
Baeza-Yates, R. and Gonnet, G.H. (1992) 'A new approach to text searching', Communications of the ACM, Vol. 35, No. 10, pp.74-82.
-
(1992)
Communications of the ACM
, vol.35
, Issue.10
, pp. 74-82
-
-
Baeza-Yates, R.1
Gonnet, G.H.2
-
5
-
-
24644485436
-
Indexing DNA sequences using q-grams
-
Beijing, China
-
Cao, X., Li, C.S. and Tung, K.H.A. (2005) 'Indexing DNA sequences using q-grams', DASFAA: Proceedings of the 10th International Conference on Database Systems for Advanced Applications, Beijing, China, pp.4-16.
-
(2005)
DASFAA: Proceedings of the 10th International Conference on Database Systems for Advanced Applications
, pp. 4-16
-
-
Cao, X.1
Li, C.S.2
Tung, K.H.A.3
-
6
-
-
32644440602
-
Construction of Aho Corasick automaton in linear time for integer alphabets
-
Dori, S. and Landau, G.M. (2006) 'Construction of Aho Corasick automaton in linear time for integer alphabets', Information Processing Letters, Vol. 98, No. 2, pp.66-72.
-
(2006)
Information Processing Letters
, vol.98
, Issue.2
, pp. 66-72
-
-
Dori, S.1
Landau, G.M.2
-
7
-
-
0035399728
-
SNP association studies in Alzheimers disease highlight problems for complex disease analysis
-
Emahazion, T., Feuk, L., Jobs, M., Sawyer, S.L., Fredman, D., St Clair, D., Prince, J.A. and Brookes, A.J. (2001) 'SNP association studies in Alzheimers disease highlight problems for complex disease analysis', Trends in Genetics, Vol. 17, No. 7, pp.407-413.
-
(2001)
Trends in Genetics
, vol.17
, Issue.7
, pp. 407-413
-
-
Emahazion, T.1
Feuk, L.2
Jobs, M.3
Sawyer, S.L.4
Fredman, D.5
St Clair, D.6
Prince, J.A.7
Brookes, A.J.8
-
8
-
-
33645124451
-
Using high-throughput SNP technologies to study cancer
-
Engle, L.J., Simpson, C.L. and Landers, J.E. (2006) 'Using high-throughput SNP technologies to study cancer', Oncogene, Vol. 25, No. 11, pp.1594-1601.
-
(2006)
Oncogene
, vol.25
, Issue.11
, pp. 1594-1601
-
-
Engle, L.J.1
Simpson, C.L.2
Landers, J.E.3
-
10
-
-
77958074143
-
REAL: An efficient REad ALigner for next generation sequencing reads
-
ACM, Chicago, USA
-
Frousios, K., Iliopoulos, C.S., Mouchard, L., Pissis, S.P. and Tischler, G. (2010) 'REAL: An efficient REad ALigner for next generation sequencing reads', BCB 2011: Proceedings of the first ACM International Conference on Bioinformatics and Computational Biology, ACM, Chicago, USA, pp.154-159.
-
(2010)
BCB 2011: Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology
, pp. 154-159
-
-
Frousios, K.1
Iliopoulos, C.S.2
Mouchard, L.3
Pissis, S.P.4
Tischler, G.5
-
11
-
-
79956310837
-
Indexing similar DNA sequences
-
Weihai, China
-
Huang, S., Lam, T.W., Sung, W.K., Tam, S.L. and Yiu, S.M. (2010) 'Indexing similar DNA sequences', AAIM'10: Proceedings of the 6th International Conference on Algorithmic Aspects in Information and Management, Weihai, China, pp.180-190.
-
(2010)
AAIM'10: Proceedings of the 6th International Conference on Algorithmic Aspects in Information and Management
, pp. 180-190
-
-
Huang, S.1
Lam, T.W.2
Sung, W.K.3
Tam, S.L.4
Yiu, S.M.5
-
12
-
-
0010211338
-
Introducing efficient parallelism into approximate string matching and a new serial algorithm
-
Berkeley, CA, USA
-
Landau, G.M. and Vishkin, U. (1986) 'Introducing efficient parallelism into approximate string matching and a new serial algorithm', STOC'86: Proceedings of the 18th Annual ACM Symposium on Theory of Computing, Berkeley, CA, USA, pp.220-230.
-
(1986)
STOC'86: Proceedings of the 18th Annual ACM Symposium on Theory of Computing
, pp. 220-230
-
-
Landau, G.M.1
Vishkin, U.2
-
13
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
Langmead, B., Trapnell, C., Pop, M. and Salzberg, S.L. (2009) 'Ultrafast and memory-efficient alignment of short DNA sequences to the human genome', Genome Biology, Vol.10, No. 3, p.R25.
-
(2009)
Genome Biology
, vol.10
, Issue.3
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
14
-
-
18844405663
-
Space-efficient whole genome comparisons with Burrows-Wheeler
-
Lippert, R.A. (2005) 'Space-efficient whole genome comparisons with Burrows-Wheeler', Journal of Computational Biology', Vol. 12, No. 4, pp.407-415.
-
(2005)
Journal of Computational Biology'
, vol.12
, Issue.4
, pp. 407-415
-
-
Lippert, R.A.1
-
15
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li, H. and Durbin, R. (2009) 'Fast and accurate short read alignment with Burrows-Wheeler transform', Bioinformatics, Vol. 25, No. 14, pp.1753-1760.
-
(2009)
Bioinformatics
, vol.25
, Issue.14
, pp. 1753-1760
-
-
Li, H.1
Durbin, R.2
-
16
-
-
67650711615
-
SOAP2: An improved ultrafast tool for short read alignment
-
Li, R., Yu, C., Li, Y., Lam, T.W., Yiu, S.M., Kristiansen, K. and Wang, J. (2009) 'SOAP2: An improved ultrafast tool for short read alignment', Bioinformatics, Vol. 25, No. 16, pp.1966-1967.
-
(2009)
Bioinformatics
, vol.25
, Issue.16
, pp. 1966-1967
-
-
Li, R.1
Yu, C.2
Li, Y.3
Lam, T.W.4
Yiu, S.M.5
Kristiansen, K.6
Wang, J.7
-
17
-
-
24044455869
-
Genome sequencing in microfabricated high-density picolitre reactors
-
Margulies, M., Egholm, M., Altman, W. E., Attiya, S., Bader, J. S., Bemben, L. A., Berka, J., Braverman, M. S., Chen, Y., Chen, Z., Dewell, S. B., Du, L., Fierro, J. M., and Gomes, X. V., Godwin, B. C., He, W., Helgesen, S., Ho, C. H., Irzyk, G. P., Jando, S. C., Alenquer, M. L. I., Jarvie, T. P., Jirage, K. B., Kim, J., Knight, J. R., Lanza, J. R., Leamon, J. H., Lefkowitz, S. M., Lei, M., Li, J., Lohman, K. L., Lu, H., Makhijani, V. B., McDade, K. E., McKenna, M. P., Myers, E. W., Nickerson, E., Nobile, J. R., Plant, R., Puc, B. P., Ronan, M. T., Roth, G. T., Sarkis, G. J., Simons, J. F., Simpson, J. W., Srinivasan, M., Tartaro, K. R., Tomasz, A., Vogt, K. A., Volkmer, G. A., Wang, S. H., Wang, Y., Weiner, M. P., Yu, P., Begley, R. F. and Rothberg, J. M. (2005) 'Genome sequencing in microfabricated high-density picolitre reactors', Nature, Vol. 437, No. 7057, pp.376-380.
-
(2005)
Nature
, vol.437
, Issue.7057
, pp. 376-380
-
-
Margulies, M.1
Egholm, M.2
Altman, W.E.3
Attiya, S.4
Bader, J.S.5
Bemben, L.A.6
Berka, J.7
Braverman, M.S.8
Chen, Y.9
Chen, Z.10
Du Dewell, S.B.L.11
Fierro, J.M.12
Gomes, X.V.13
Godwin, B.C.14
He, W.15
Helgesen, S.16
Ho, C.H.17
Irzyk, G.P.18
Jando, S.C.19
Alenquer, M.L.I.20
Jarvie, T.P.21
Jirage, K.B.22
Kim, J.23
Knight, J.R.24
Lanza, J.R.25
Leamon, J.H.26
Lefkowitz, S.M.27
Lei, M.28
Li, J.29
Lohman, K.L.30
Lu, H.31
Makhijani, V.B.32
McDade, K.E.33
McKenna, M.P.34
Myers, E.W.35
Nickerson, E.36
Nobile, J.R.37
Plant, R.38
Puc, B.P.39
Ronan, M.T.40
Roth, G.T.41
Sarkis, G.J.42
Simons, J.F.43
Simpson, J.W.44
Srinivasan, M.45
Tartaro, K.R.46
Tomasz, A.47
Vogt, K.A.48
Volkmer, G.A.49
Wang, S.H.50
Wang, Y.51
Weiner, M.P.52
Yu, P.53
Begley, R.F.54
Rothberg, J.M.55
more..
-
18
-
-
0008261096
-
A new method for sequencing DNA
-
Maxam, A.M. and Gilbert, W. (1977) 'A new method for sequencing DNA', Proceedings of the National Academy of Sciences of the United States of America, Vol. 74, No. 2, pp.560-564.
-
(1977)
Proceedings of the National Academy of Sciences of the United States of America
, vol.74
, Issue.2
, pp. 560-564
-
-
Maxam, A.M.1
Gilbert, W.2
-
19
-
-
84874428396
-
A modification of the Landau-Vishkin algorithm computing longest common extensions via suffix arrays
-
Springer Berlin/Heidelberg
-
Miranda, R.C. and Ayala-Rincn, M. (2005) 'A modification of the Landau-Vishkin algorithm computing longest common extensions via suffix arrays', Advances in Bioinformatics and Computational Biology, Springer Berlin/Heidelberg.
-
(2005)
Advances in Bioinformatics and Computational Biology
-
-
Miranda, R.C.1
Ayala-Rincn, M.2
-
20
-
-
84874403659
-
-
NCBI (National Center for Biotechnology Information) (2012) Database of SNPs. Avaliable online at:, "accessed on 15 February
-
NCBI (National Center for Biotechnology Information) (2012) Database of SNPs. Avaliable online at: Http://www.ncbi.nlm.nih.gov/projects/SNP/index.html (accessed on 15 February)
-
-
-
-
21
-
-
73349110071
-
Exome sequencing identifies the cause of a Mendelian disorder
-
Ng, S.B., Buckingham, K.J., Lee, C., Bigham, A.W., Tabor, H.K., Dent, K. M., Huff, C.D., Shannon, P.T., Jabs, E.W., Nickerson, D.A., Shendure, J. and Bamshad, M.J. (2010) 'Exome sequencing identifies the cause of a Mendelian disorder', Nature Genetics, Vol. 42, No. 1, pp.30-35.
-
(2010)
Nature Genetics
, vol.42
, Issue.1
, pp. 30-35
-
-
Ng, S.B.1
Buckingham, K.J.2
Lee, C.3
Bigham, A.W.4
Tabor, H.K.5
Dent, K.M.6
Huff, C.D.7
Shannon, P.T.8
Jabs, E.W.9
Nickerson, D.A.10
Shendure, J.11
Bamshad, M.J.12
-
22
-
-
79953707599
-
Rapid identification of mutations in GJC2 in primary lymphoedema using whole exome sequencing combined with linkage analysis with delineation of the phenotype
-
Ostergaard, P., Simpson, M.A., Brice, G., Mansour, S., Connell, F.C., Onoufriadis, A., Child, A.H., Hwang, J., Kalidas, K., Mortimer, P.S., Trembath, R. and Jeffery, S. (2010) 'Rapid identification of mutations in GJC2 in primary lymphoedema using whole exome sequencing combined with linkage analysis with delineation of the phenotype', Journal of Medical Genetics, Vol. 48, No. 4, pp.251-255.
-
(2010)
Journal of Medical Genetics
, vol.48
, Issue.4
, pp. 251-255
-
-
Ostergaard, P.1
Simpson, M.A.2
Brice, G.3
Mansour, S.4
Connell, F.C.5
Onoufriadis, A.6
Child, A.H.7
Hwang, J.8
Kalidas, K.9
Mortimer, P.S.10
Trembath, R.11
Jeffery, S.12
-
23
-
-
0025272240
-
Rapid and sensitive sequence comparison with FASTP and FASTA
-
Pearson, W.P. (1990) 'Rapid and sensitive sequence comparison with FASTP and FASTA', Methods in Enzymology, Vol. 183, pp.63-68.
-
(1990)
Methods in Enzymology
, vol.183
, pp. 63-68
-
-
Pearson, W.P.1
-
24
-
-
0017367852
-
Nucleotide sequence of bacteriophage phi X174 DNA
-
Sanger, F., Air, G.M., Barrell, B.G., Brown, N.L., Coulson, A.R., Fiddes, C.A., Hutchison, C.A., Slocombe, P.M. and Smith, M. (1977a) 'Nucleotide sequence of bacteriophage phi X174 DNA', Nature, Vol. 265, No. 5596, pp.687-695.
-
(1977)
Nature
, vol.265
, Issue.5596
, pp. 687-695
-
-
Sanger, F.1
Air, G.M.2
Barrell, B.G.3
Brown, N.L.4
Coulson, A.R.5
Fiddes, C.A.6
Hutchison, C.A.7
Slocombe, P.M.8
Smith, M.9
-
25
-
-
0016800090
-
A rapid method for determining sequences in DNA by primed synthesis with DNA polymerase
-
Sanger, F. and Coulson, A.R. (1975) 'A rapid method for determining sequences in DNA by primed synthesis with DNA polymerase', Journal of Molecular Biology, Vol. 94, No. 3, pp.441-448.
-
(1975)
Journal of Molecular Biology
, vol.94
, Issue.3
, pp. 441-448
-
-
Sanger, F.1
Coulson, A.R.2
-
26
-
-
0017681196
-
DNA sequencing with chain-terminating inhibitors
-
Sanger, F. and Coulson, A.R. (1977b) 'DNA sequencing with chain-terminating inhibitors', Proceedings of the National Academy of Science of the United States of America, Vol. 74, No. 12, pp.5463-5467.
-
(1977)
Proceedings of the National Academy of Science of the United States of America
, vol.74
, Issue.12
, pp. 5463-5467
-
-
Sanger, F.1
Coulson, A.R.2
-
27
-
-
24644462173
-
Accurate multiplex polony sequencing of an evolved bacterial genome
-
Shendure, J., Porreca, G.J., Reppas, N.B., Lin, X., McCutcheon, J.P., Rosenbaum, A.M., Wang, M.D., Zhang, K., Mitra, R.D. and Church, G.M. (2005) 'Accurate multiplex polony sequencing of an evolved bacterial genome', Science, Vol. 309, No. 5741, pp.1728-1732.
-
(2005)
Science
, vol.309
, Issue.5741
, pp. 1728-1732
-
-
Shendure, J.1
Porreca, G.J.2
Reppas, N.B.3
Lin, X.4
McCutcheon, J.P.5
Rosenbaum, A.M.6
Wang, M.D.7
Zhang, K.8
Mitra, R.D.9
Church, G.M.10
-
28
-
-
79953197889
-
Mutations in NOTCH2 cause Hajdu-Cheney syndrome, a disorder of severe and progressive bone loss
-
Simpson, M.A., Irving, M.D., Asilmaz, E., Gray, M.J., Dafou, D., Elmslie, F.V., Mansour, S., Holder, S.E., Brain, C.E., Burton, B.K., Kim, K.H., Pauli, R.M., Aftimos, S., Stewart, H., Kim, C.A., Holder-Espinasse, M., Robertson, S.P., Drake, W.M. and Trembath, R.C. (2011) 'Mutations in NOTCH2 cause Hajdu-Cheney syndrome, a disorder of severe and progressive bone loss', Nature Genetics, Vol. 43, No. 4, pp.303-305.
-
(2011)
Nature Genetics
, vol.43
, Issue.4
, pp. 303-305
-
-
Simpson, M.A.1
Irving, M.D.2
Asilmaz, E.3
Gray, M.J.4
Dafou, D.5
Elmslie, F.V.6
Mansour, S.7
Holder, S.E.8
Brain, C.E.9
Burton, B.K.10
Kim, K.H.11
Pauli, R.M.12
Aftimos, S.13
Stewart, H.14
Kim, C.A.15
Holder-Espinasse, M.16
Robertson, S.P.17
Drake, W.M.18
Trembath, R.C.19
-
29
-
-
0035098963
-
A classification of tasks in bioinformatics
-
Stevens, R., Goble, C., Baker, P. and Brass, A. (2001) 'A classification of tasks in bioinformatics', Bioinformatics, Vol. 17, pp.180-1888.
-
(2001)
Bioinformatics
, vol.17
, pp. 180-1888
-
-
Stevens, R.1
Goble, C.2
Baker, P.3
Brass, A.4
|