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Volumn 12, Issue 4, 2005, Pages 407-415

Space-efficient whole genome comparisons with Burrows-Wheeler transforms

Author keywords

Burrows Wheeler transforms; BWT; Comparative genomics; Compressed suffix array; Strings

Indexed keywords

NUCLEOTIDE;

EID: 18844405663     PISSN: 10665277     EISSN: None     Source Type: Journal    
DOI: 10.1089/cmb.2005.12.407     Document Type: Review
Times cited : (43)

References (17)
  • 5
    • 0033690274 scopus 로고    scopus 로고
    • Compressed suffix arrays and suffix trees with applications to text indexing and string matching
    • Grossi, R., and Vitter, J.S. 2000. Compressed suffix arrays and suffix trees with applications to text indexing and string matching (extended abstract). Proc. 32nd ACM Symp. on Theory of Comp. (STOC '00), 397-406.
    • (2000) Proc. 32nd ACM Symp. on Theory of Comp. (STOC '00) , pp. 397-406
    • Grossi, R.1    Vitter, J.S.2
  • 9
    • 0033227559 scopus 로고    scopus 로고
    • Reducing the space requirement of suffix trees
    • Kurtz, S. 1999. Reducing the space requirement of suffix trees. Software - Practice and Experience 29(13), 1149-1171.
    • (1999) Software - Practice and Experience , vol.29 , Issue.13 , pp. 1149-1171
    • Kurtz, S.1
  • 12
    • 18844362535 scopus 로고    scopus 로고
    • A space-efficient construction of the Burrows Wheeler transform for genomic data
    • Lippert, R.A., Mobarry, C.M., and Walenz, B.P. 2004. A space-efficient construction of the Burrows Wheeler transform for genomic data. Submitted to J. Comp. Biol. www-math.mit.edu/~lippert/research/JCB-submission-2.pdf.
    • (2004) Submitted to J. Comp. Biol.
    • Lippert, R.A.1    Mobarry, C.M.2    Walenz, B.P.3
  • 13
    • 0027681165 scopus 로고
    • Suffix arrays: A new method for on-line string searches
    • Manber, U., and Myers, E. 1993. Suffix arrays: A new method for on-line string searches. SIAM J. Comput. 22(5), 935-948.
    • (1993) SIAM J. Comput. , vol.22 , Issue.5 , pp. 935-948
    • Manber, U.1    Myers, E.2
  • 14
    • 0033677426 scopus 로고    scopus 로고
    • Algorithms for extracting structured motifs using a suffix tree with application to promoter and regulatory site consensus identification
    • Marsan, L., and Sagot, M.-F. 2000. Algorithms for extracting structured motifs using a suffix tree with application to promoter and regulatory site consensus identification. J. Comp. Biol. 1, 345-360.
    • (2000) J. Comp. Biol. , vol.1 , pp. 345-360
    • Marsan, L.1    Sagot, M.-F.2
  • 15
    • 0016942292 scopus 로고
    • A space economical suffix tree construction algorithm
    • McCreight, E. 1976. A space economical suffix tree construction algorithm. J. ACM 23, 262-272.
    • (1976) J. ACM , vol.23 , pp. 262-272
    • McCreight, E.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.