-
1
-
-
77958160463
-
An aminotransferase branch point connects purine catabolism to amino acid recycling
-
Nov
-
Ramazzina I, Costa R, Cendron L, et al. An aminotransferase branch point connects purine catabolism to amino acid recycling. Nat Chem Biol. Nov 2010;6(11):801-6.
-
(2010)
Nat Chem Biol
, vol.6
, Issue.11
, pp. 801-806
-
-
Ramazzina, I.1
Costa, R.2
Cendron, L.3
-
2
-
-
79959871745
-
The biochemistry of nitrogen mobilization: Purine ring catabolism
-
Jul
-
Werner AK, Witte CP. The biochemistry of nitrogen mobilization: purine ring catabolism. Trends Plant Sci. Jul 2011;16(7):381-7.
-
(2011)
Trends Plant Sci
, vol.16
, Issue.7
, pp. 381-387
-
-
Werner, A.K.1
Witte, C.P.2
-
3
-
-
0001446850
-
Urea, ureides, and guanidines in plants
-
Reinbothe H, Mothes K. Urea, ureides, and guanidines in plants. Annu Rev Plant Phys. 1962;13(1):129-49.
-
(1962)
Annu Rev Plant Phys
, vol.13
, Issue.1
, pp. 129-149
-
-
Reinbothe, H.1
Mothes, K.2
-
4
-
-
81355149268
-
A phylogeny and molecular barcodes for Caenorhabditis, with numerous new species from rotting fruits
-
Kiontke KC, Felix MA, Ailion M, et al. A phylogeny and molecular barcodes for Caenorhabditis, with numerous new species from rotting fruits. BMC Evol Biol. 2011;11:339.
-
(2011)
BMC Evol Biol
, vol.11
, pp. 339
-
-
Kiontke, K.C.1
Felix, M.A.2
Ailion, M.3
-
5
-
-
84863237607
-
Adaptive horizontal transfer of a bacterial gene to an invasive insect pest of coffee
-
Mar 13
-
Acuna R, Padilla BE, Florez-Ramos CP, et al. Adaptive horizontal transfer of a bacterial gene to an invasive insect pest of coffee. Proc Natl Acad Sci U S A. Mar 13, 2012;109(11):4197-202.
-
(2012)
Proc Natl Acad Sci U S A
, vol.109
, Issue.11
, pp. 4197-4202
-
-
Acuna, R.1
Padilla, B.E.2
Florez-Ramos, C.P.3
-
6
-
-
0034565944
-
The evolutionary history of ribosomal protein RpS14: Horizontal gene transfer at the heart of the ribosome
-
Dec
-
Brochier C, Philippe H, Moreira D. The evolutionary history of ribosomal protein RpS14: horizontal gene transfer at the heart of the ribosome. Trends Genet. Dec 2000;16(12):529-33.
-
(2000)
Trends Genet
, vol.16
, Issue.12
, pp. 529-533
-
-
Brochier, C.1
Philippe, H.2
Moreira, D.3
-
7
-
-
0036892058
-
Simultaneous horizontal gene transfer of a gene coding for ribosomal protein l27 and operational genes in Arthrobacter sp
-
Dec
-
Garcia-Vallve S, Simo FX, Montero MA, Arola L, Romeu A. Simultaneous horizontal gene transfer of a gene coding for ribosomal protein l27 and operational genes in Arthrobacter sp. J Mol Evol. Dec 2002;55(6):632-7.
-
(2002)
J Mol Evol
, vol.55
, Issue.6
, pp. 632-637
-
-
Garcia-Vallve, S.1
Simo, F.X.2
Montero, M.A.3
Arola, L.4
Romeu, A.5
-
8
-
-
69549135124
-
Phymm and PhymmBL: Metagenomic phylogenetic classification with interpolated Markov models
-
Sep
-
Brady A, Salzberg SL. Phymm and PhymmBL: metagenomic phylogenetic classification with interpolated Markov models. Nat Methods. Sep 2009; 6(9):673-6.
-
(2009)
Nat Methods
, vol.6
, Issue.9
, pp. 673-676
-
-
Brady, A.1
Salzberg, S.L.2
-
9
-
-
43149115851
-
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
-
May
-
Zerbino DR, Birney E. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. May 2008;18(5):821-9.
-
(2008)
Genome Res
, vol.18
, Issue.5
, pp. 821-829
-
-
Zerbino, D.R.1
Birney, E.2
-
10
-
-
78650050018
-
Scaffolding a Caenorhabditis nematode genome with RNA-seq
-
Dec
-
Mortazavi A, Schwarz EM, Williams B, et al. Scaffolding a Caenorhabditis nematode genome with RNA-seq. Genome Res. Dec 2010;20(12): 1740-7.
-
(2010)
Genome Res
, vol.20
, Issue.12
, pp. 1740-1747
-
-
Mortazavi, A.1
Schwarz, E.M.2
Williams, B.3
-
11
-
-
84855896771
-
Draft genome sequence of Leucobacter chromiiresistens, an extremely chromium-tolerant strain
-
Jan
-
Sturm G, Buchta K, Kurz T, Rensing SA, Gescher J. Draft genome sequence of Leucobacter chromiiresistens, an extremely chromium-tolerant strain. J Bacteriol. Jan 2012;194(2):540-1.
-
(2012)
J Bacteriol
, vol.194
, Issue.2
, pp. 540-541
-
-
Sturm, G.1
Buchta, K.2
Kurz, T.3
Rensing, S.A.4
Gescher, J.5
-
12
-
-
40549120596
-
The RAST Server: Rapid annotations using subsystems technology
-
Aziz RK, Bartels D, Best AA, et al. The RAST Server: rapid annotations using subsystems technology. BMC Genomics. 2008;9:75.
-
(2008)
BMC Genomics
, vol.9
, pp. 75
-
-
Aziz, R.K.1
Bartels, D.2
Best, A.A.3
-
13
-
-
43249102444
-
The use of the rare UUA codon to define "expression space" for genes involved in secondary metabolism, development and environmental adaptation in streptomyces
-
Feb
-
Chater KF, Chandra G. The use of the rare UUA codon to define "expression space" for genes involved in secondary metabolism, development and environmental adaptation in streptomyces. J Microbiol. Feb 2008;46(1):1-11.
-
(2008)
J Microbiol
, vol.46
, Issue.1
, pp. 1-11
-
-
Chater, K.F.1
Chandra, G.2
-
14
-
-
34548746905
-
Genomics of Actinobacteria: Tracing the evolutionary history of an ancient phylum
-
Sep
-
Ventura M, Canchaya C, Tauch A, et al. Genomics of Actinobacteria: tracing the evolutionary history of an ancient phylum. Microbiol Mol Biol Rev. Sep 2007;71(3):495-548.
-
(2007)
Microbiol Mol Biol Rev
, vol.71
, Issue.3
, pp. 495-548
-
-
Ventura, M.1
Canchaya, C.2
Tauch, A.3
-
15
-
-
79959455084
-
Comparative whole genome sequencing reveals phenotypic tRNA gene duplication in spontaneous Schizosaccharomyces pombe La mutants
-
Jun
-
Iben JR, Epstein JA, Bayfield MA, et al. Comparative whole genome sequencing reveals phenotypic tRNA gene duplication in spontaneous Schizosaccharomyces pombe La mutants. Nucleic Acids Res. Jun 2011; 39(11):4728-42.
-
(2011)
Nucleic Acids Res
, vol.39
, Issue.11
, pp. 4728-4742
-
-
Iben, J.R.1
Epstein, J.A.2
Bayfield, M.A.3
-
16
-
-
0023652058
-
Synonymous codon usage in Bacillus subtilis reflects both translational selection and mutational biases
-
Oct 12
-
Shields DC, Sharp PM. Synonymous codon usage in Bacillus subtilis reflects both translational selection and mutational biases. Nucleic Acids Res. Oct 12, 1987;15(19):8023-40.
-
(1987)
Nucleic Acids Res
, vol.15
, Issue.19
, pp. 8023-8040
-
-
Shields, D.C.1
Sharp, P.M.2
-
17
-
-
17444449538
-
Transfer RNA gene redundancy and translational selection in Saccharomyces cerevisiae
-
May 2
-
Percudani R, Pavesi A, Ottonello S. Transfer RNA gene redundancy and translational selection in Saccharomyces cerevisiae. J Mol Biol. May 2, 1997;268(2):322-30.
-
(1997)
J Mol Biol
, vol.268
, Issue.2
, pp. 322-330
-
-
Percudani, R.1
Pavesi, A.2
Ottonello, S.3
-
18
-
-
3442895921
-
The complete genome sequence of Propionibacterium acnes, a commensal of human skin
-
Jul 30
-
Bruggemann H, Henne A, Hoster F, et al. The complete genome sequence of Propionibacterium acnes, a commensal of human skin. Science. Jul 30, 2004;305(5684):671-3.
-
(2004)
Science
, vol.305
, Issue.5684
, pp. 671-673
-
-
Bruggemann, H.1
Henne, A.2
Hoster, F.3
-
19
-
-
79959505685
-
Characterization of the structure and function of Klebsiella pneumoniae allantoin racemase
-
Jul 15
-
French JB, Neau DB, Ealick SE. Characterization of the structure and function of Klebsiella pneumoniae allantoin racemase. J Mol Biol. Jul 15, 2011;410(3):447-60.
-
(2011)
J Mol Biol
, vol.410
, Issue.3
, pp. 447-460
-
-
French, J.B.1
Neau, D.B.2
Ealick, S.E.3
-
20
-
-
63449109297
-
Crystal structure of metal-dependent allantoinase from Escherichia coli
-
Apr 17
-
Kim K, Kim MI, Chung J, Ahn JH, Rhee S. Crystal structure of metal-dependent allantoinase from Escherichia coli. J Mol Biol. Apr 17, 2009; 387(5):1067-74.
-
(2009)
J Mol Biol
, vol.387
, Issue.5
, pp. 1067-1074
-
-
Kim, K.1
Kim, M.I.2
Chung, J.3
Ahn, J.H.4
Rhee, S.5
-
21
-
-
0018972331
-
Structural analysis of the dur loci in S. cerevisiae: Two domains of a single multifunctional gene
-
Mar
-
Cooper TG, Lam C, Turoscy V. Structural analysis of the dur loci in S. cerevisiae: two domains of a single multifunctional gene. Genetics. Mar 1980;94(3):555-80.
-
(1980)
Genetics
, vol.94
, Issue.3
, pp. 555-580
-
-
Cooper, T.G.1
Lam, C.2
Turoscy, V.3
-
22
-
-
22844450779
-
Birth of a metabolic gene cluster in yeast by adaptive gene relocation
-
Jul
-
Wong S, Wolfe KH. Birth of a metabolic gene cluster in yeast by adaptive gene relocation. Nat Genet. Jul 2005;37(7):777-82.
-
(2005)
Nat Genet
, vol.37
, Issue.7
, pp. 777-782
-
-
Wong, S.1
Wolfe, K.H.2
-
23
-
-
33947302827
-
Taxonomic parameters revisited: Tarnished gold standards
-
Stackebrandt E, Ebers J. Taxonomic parameters revisited: tarnished gold standards. Microbiol Today. 2006;33:152-5.
-
(2006)
Microbiol Today
, vol.33
, pp. 152-155
-
-
Stackebrandt, E.1
Ebers, J.2
-
24
-
-
34248206073
-
Leucobacter iarius sp. nov., in the family Microbacteriaceae
-
Apr
-
Somvanshi VS, Lang E, Schumann P, et al. Leucobacter iarius sp. nov., in the family Microbacteriaceae. Int J Syst Evol Microbiol. Apr 2007;57(Pt 4): 682-6.
-
(2007)
Int J Syst Evol Microbiol
, vol.57
, Issue.PART 4
, pp. 682-686
-
-
Somvanshi, V.S.1
Lang, E.2
Schumann, P.3
-
25
-
-
0030764901
-
Aerobic regulation of cytochrome d oxidase (cydAB) operon expression in Escherichia coli: Roles of Fnr and ArcA in repression and activation
-
Aug
-
Cotter PA, Melville SB, Albrecht JA, Gunsalus RP. Aerobic regulation of cytochrome d oxidase (cydAB) operon expression in Escherichia coli: roles of Fnr and ArcA in repression and activation. Mol Microbiol. Aug 1997; 25(3):605-15.
-
(1997)
Mol Microbiol
, vol.25
, Issue.3
, pp. 605-615
-
-
Cotter, P.A.1
Melville, S.B.2
Albrecht, J.A.3
Gunsalus, R.P.4
-
26
-
-
66749136930
-
Massive comparative genomic analysis reveals convergent evolution of specialized bacteria
-
Merhej V, Royer-Carenzi M, Pontarotti P, Raoult D. Massive comparative genomic analysis reveals convergent evolution of specialized bacteria. Biol Direct. 2009;4:13.
-
(2009)
Biol Direct
, vol.4
, pp. 13
-
-
Merhej, V.1
Royer-Carenzi, M.2
Pontarotti, P.3
Raoult, D.4
-
27
-
-
83855165692
-
Extreme genome reduction in symbiotic bacteria
-
Jan
-
McCutcheon JP, Moran NA. Extreme genome reduction in symbiotic bacteria. Nat Rev Microbiol. Jan 2012;10(1):13-26.
-
(2012)
Nat Rev Microbiol
, vol.10
, Issue.1
, pp. 13-26
-
-
McCutcheon, J.P.1
Moran, N.A.2
-
28
-
-
46949088951
-
Virulence of Leucobacter chromiireducens subsp. solipictus to Caenorhabditis elegans: Characterization of a novel host-pathogen interaction
-
Jul
-
Muir RE, Tan MW. Virulence of Leucobacter chromiireducens subsp. solipictus to Caenorhabditis elegans: characterization of a novel host-pathogen interaction. Appl Environ Microbiol. Jul 2008;74(13):4185-98.
-
(2008)
Appl Environ Microbiol
, vol.74
, Issue.13
, pp. 4185-4198
-
-
Muir, R.E.1
Tan, M.W.2
-
29
-
-
79952390994
-
Fast identification and removal of sequence contamination from genomic and metagenomic datasets
-
Schmieder R, Edwards R. Fast identification and removal of sequence contamination from genomic and metagenomic datasets. PloS One. 2011;6(3): e17288.
-
(2011)
PloS One
, vol.6
, Issue.3
-
-
Schmieder, R.1
Edwards, R.2
-
30
-
-
79951881661
-
Abundant human DNA contamination identified in non-primate genome databases
-
Longo MS, O'Neill MJ, O'Neill RJ. Abundant human DNA contamination identified in non-primate genome databases. PloS One. 2011;6(2):e16410.
-
(2011)
PloS One
, vol.6
, Issue.2
-
-
Longo, M.S.1
O'Neill, M.J.2
O'Neill, R.J.3
-
31
-
-
34147132825
-
Identifying bacterial genes and endosymbiont DNA with Glimmer
-
Mar 15
-
Delcher AL, Bratke KA, Powers EC, Salzberg SL. Identifying bacterial genes and endosymbiont DNA with Glimmer. Bioinformatics (Oxford, England). Mar 15, 2007;23(6):673-9.
-
(2007)
Bioinformatics (Oxford, England)
, vol.23
, Issue.6
, pp. 673-679
-
-
Delcher, A.L.1
Bratke, K.A.2
Powers, E.C.3
Salzberg, S.L.4
-
32
-
-
84874404973
-
MetaVelvet: An Extension of Velvet Assembler to De Novo Metagenome Assembly from Short Sequence Reads
-
Chicago, Illinois
-
Toshiaki N, Tsuyoshi H, Hideaki T, Yasubumi S. MetaVelvet: An Extension of Velvet Assembler to De Novo Metagenome Assembly from Short Sequence Reads. Proceedings of the 2nd ACM Conference on Bioinformatics, Computational Biology and Biomedicine; 2011; Chicago, Illinois.
-
(2011)
Proceedings of the 2nd ACM Conference On Bioinformatics, Computational Biology and Biomedicine
-
-
Toshiaki, N.1
Tsuyoshi, H.2
Hideaki, T.3
Yasubumi, S.4
-
33
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice
-
Nov 11
-
Thompson JD, Higgins DG, Gibson TJ. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acids Res. Nov 11, 1994;22(22):4673-80.
-
(1994)
Nucleic Acids Res
, vol.22
, Issue.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
34
-
-
0019797407
-
Evolutionary trees from DNA sequences: A maximum likelihood approach
-
Felsenstein J. Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol. 1981;17(6):368-76.
-
(1981)
J Mol Evol
, vol.17
, Issue.6
, pp. 368-376
-
-
Felsenstein, J.1
-
35
-
-
39149120619
-
Figaro: A novel statistical method for vector sequence removal
-
Feb 15
-
White JR, Roberts M, Yorke JA, Pop M. Figaro: a novel statistical method for vector sequence removal. Bioinformatics (Oxford, England). Feb 15, 2008;24(4):462-7.
-
(2008)
Bioinformatics (Oxford, England)
, vol.24
, Issue.4
, pp. 462-467
-
-
White, J.R.1
Roberts, M.2
Yorke, J.A.3
Pop, M.4
-
36
-
-
2942538300
-
Versatile and open software for comparing large genomes
-
Kurtz S, Phillippy A, Delcher AL, et al. Versatile and open software for comparing large genomes. Genome Biol. 2004;5(2):R12.
-
(2004)
Genome Biol
, vol.5
, Issue.2
-
-
Kurtz, S.1
Phillippy, A.2
Delcher, A.L.3
-
37
-
-
0030854739
-
tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
-
Mar 1
-
Lowe TM, Eddy SR. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. Mar 1, 1997; 25(5):955-64.
-
(1997)
Nucleic Acids Res
, vol.25
, Issue.5
, pp. 955-964
-
-
Lowe, T.M.1
Eddy, S.R.2
-
38
-
-
33644853072
-
TFAM detects co-evolution of tRNA identity rules with lateral transfer of histidyl-tRNA synthetase
-
Ardell DH, Andersson SG. TFAM detects co-evolution of tRNA identity rules with lateral transfer of histidyl-tRNA synthetase. Nucleic Acids Res. 2006;34(3):893-904.
-
(2006)
Nucleic Acids Res
, vol.34
, Issue.3
, pp. 893-904
-
-
Ardell, D.H.1
Andersson, S.G.2
|