-
1
-
-
0037059610
-
Phage genomics: Small is beautiful
-
Brüssow, H. & Hendrix, R. W. Phage genomics: small is beautiful. Cell 108, 13-16 (2002).
-
(2002)
Cell
, vol.108
, pp. 13-16
-
-
Brüssow, H.1
Hendrix, R.W.2
-
2
-
-
77951104433
-
Bacteriophage resistance mechanisms
-
Labrie, S. J., Samson, J. E. & Moineau, S. Bacteriophage resistance mechanisms. Nature Rev. Microbiol. 8, 317-327 (2010).
-
(2010)
Nature Rev. Microbiol
, vol.8
, pp. 317-327
-
-
Labrie, S.J.1
Samson, J.E.2
Moineau, S.3
-
3
-
-
78650045540
-
The phage-host armsrace: Shaping the evolution of microbes
-
Stern, A.& Sorek, R. The phage-host armsrace: shaping the evolution of microbes. Bioessays 33, 43-51 (2011).
-
(2011)
Bioessays
, vol.33
, pp. 43-51
-
-
Stern, A.1
Sorek, R.2
-
4
-
-
74249095519
-
CRISPR/Cas, the immune system of bacteria and archaea
-
Horvath, P. & Barrangou, R. CRISPR/Cas, the immune system of bacteria and archaea. Science 327, 167-170 (2010).
-
(2010)
Science
, vol.327
, pp. 167-170
-
-
Horvath, P.1
Barrangou, R.2
-
5
-
-
34047118522
-
CRISPR provides acquired resistance against viruses in prokaryotes
-
Barrangou, R. et al. CRISPR provides acquired resistance against viruses in prokaryotes. Science 315, 1709-1712 (2007).
-
(2007)
Science
, vol.315
, pp. 1709-1712
-
-
Barrangou, R.1
-
6
-
-
57849137502
-
CRISPR interference limits horizontal gene transfer in staphylococci by targeting DNA
-
Marraffini, L. A. & Sontheimer, E. J. CRISPR interference limits horizontal gene transfer in staphylococci by targeting DNA. Science 322, 1843-1845 (2008).
-
(2008)
Science
, vol.322
, pp. 1843-1845
-
-
Marraffini, L.A.1
Sontheimer, E.J.2
-
7
-
-
80755187812
-
CRISPR-Cas systems in bacteria and archaea: Versatile small RNAs for adaptive defense and regulation
-
Bhaya, D., Davison, M. & Barrangou, R. CRISPR-Cas systems in bacteria and archaea: versatile small RNAs for adaptive defense and regulation. Annu. Rev. Genet. 45, 273-297 (2011).
-
(2011)
Annu. Rev. Genet
, vol.45
, pp. 273-297
-
-
Bhaya, D.1
Davison, M.2
Barrangou, R.3
-
8
-
-
68249102788
-
CRISPRbased adaptive and heritable immunity in prokaryotes
-
van der Oost, J., Jore, M. M., Westra, E. R., Lundgren, M. & Brouns, S. J. J. CRISPRbased adaptive and heritable immunity in prokaryotes. Trends Biochem. Sci. 34, 401-407 (2009).
-
(2009)
Trends Biochem. Sci
, vol.34
, pp. 401-407
-
-
Van Der Oost, J.1
Jore, M.M.2
Westra, E.R.3
Lundgren, M.4
Brouns, S.J.J.5
-
9
-
-
73649130281
-
The CRISPR system: Small RNA-guided defense in bacteria and archaea
-
Karginov, F. V. & Hannon, G. J. The CRISPR system: small RNA-guided defense in bacteria and archaea. Mol. Cell 37, 7-19 (2010).
-
(2010)
Mol. Cell
, vol.37
, pp. 7-19
-
-
Karginov, F.V.1
Hannon, G.J.2
-
10
-
-
78149261827
-
The CRISPR/Cas bacterial immune system cleaves bacteriophage and plasmid DNA
-
Garneau, J. E. et al. The CRISPR/Cas bacterial immune system cleaves bacteriophage and plasmid DNA. Nature 468, 67-71 (2010).
-
(2010)
Nature
, vol.468
, pp. 67-71
-
-
Garneau, J.E.1
-
11
-
-
77249170201
-
CRISPR interference: RNA-directed adaptive immunity in bacteria and archaea
-
Marraffini, L. A. & Sontheimer, E. J. CRISPR interference: RNA-directed adaptive immunity in bacteria and archaea. Nature Rev. Genet. 11, 181-190 (2010).
-
(2010)
Nature Rev. Genet
, vol.11
, pp. 181-190
-
-
Marraffini, L.A.1
Sontheimer, E.J.2
-
12
-
-
17844362204
-
Self-limitingnature of seasonal cholera epidemics: Role ofhostmediated amplification of phage
-
Faruque, S. M. et al. Self-limitingnature of seasonal cholera epidemics: role ofhostmediated amplification of phage. Proc. Natl Acad. Sci. USA 102, 6119-6124 (2005).
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, pp. 6119-6124
-
-
Faruque, S.M.1
-
13
-
-
70349305275
-
Cholera transmission: The host, pathogen and bacteriophage dynamic
-
Nelson, E. J., Harris, J. B., Morris, J. G., Calderwood, S. B. & Camilli, A. Cholera transmission: the host, pathogen and bacteriophage dynamic. Nature Rev. Microbiol. 7, 693-702 (2009).
-
(2009)
Nature Rev. Microbiol
, vol.7
, pp. 693-702
-
-
Nelson, E.J.1
Harris, J.B.2
Morris, J.G.3
Calderwood, S.B.4
Camilli, A.5
-
14
-
-
79955111696
-
Evidence of a dominant lineage of Vibrio cholerae-specific lytic bacteriophages shed by cholera patients over a 10-year period in Dhaka, Bangladesh
-
Seed, K. D. et al. Evidence of a dominant lineage of Vibrio cholerae-specific lytic bacteriophages shed by cholera patients over a 10-year period in Dhaka, Bangladesh. MBio 2, e00334-10 (2011).
-
(2011)
MBio
, vol.2
-
-
Seed, K.D.1
-
15
-
-
84866921116
-
Phase variableO antigen biosynthetic genes control expression of the major protective antigen and bacteriophage receptor in Vibrio cholerae O1
-
Seed, K. D. et al. Phase variableO antigen biosynthetic genes control expression of the major protective antigen and bacteriophage receptor in Vibrio cholerae O1. PLoS Pathog. 8, e1002917 (2012).
-
(2012)
PLoS Pathog
, vol.8
-
-
Seed, K.D.1
-
16
-
-
34250662138
-
The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats
-
Grissa, I., Vergnaud, G. & Pourcel, C. The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats. BMC Bioinformatics 8, 172 (2007).
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 172
-
-
Grissa, I.1
Vergnaud, G.2
Pourcel, C.3
-
17
-
-
79956157571
-
Evolution and classification of the CRISPR-Cas systems
-
Makarova, K. S. et al. Evolution and classification of the CRISPR-Cas systems. Nature Rev. Microbiol. 9, 467-477 (2011).
-
(2011)
Nature Rev. Microbiol
, vol.9
, pp. 467-477
-
-
Makarova, K.S.1
-
18
-
-
0037099229
-
Epidemic and endemic cholera trends over a 33-year period in Bangladesh
-
Longini, I. M. et al. Epidemic and endemic cholera trends over a 33-year period in Bangladesh. J. Infect. Dis. 186, 246-251 (2002).
-
(2002)
J. Infect. Dis
, vol.186
, pp. 246-251
-
-
Longini, I.M.1
-
19
-
-
64049118040
-
Short motif sequences determine the targets of the prokaryotic CRISPR defence system
-
Mojica, F. J. M., Diez-Villasenor, C., Garcia-Martinez, J. & Almendros, C. Short motif sequences determine the targets of the prokaryotic CRISPR defence system. Microbiology 155, 733-740 (2009).
-
(2009)
Microbiology
, vol.155
, pp. 733-740
-
-
Mojica, F.J.M.1
Diez-Villasenor, C.2
Garcia-Martinez, J.3
Almendros, C.4
-
20
-
-
77953478153
-
The phage-related chromosomal islands of Gram-positive bacteria
-
Novick, R. P., Christie, G. E. & Penadés, J. R. The phage-related chromosomal islands of Gram-positive bacteria. Nature Rev. Microbiol. 8, 541-551 (2010).
-
(2010)
Nature Rev. Microbiol
, vol.8
, pp. 541-551
-
-
Novick, R.P.1
Christie, G.E.2
Penadés, J.R.3
-
21
-
-
84867049470
-
Staphylococcal pathogenicity island interference with helper phage reproduction is a paradigmofmolecular parasitism
-
Ram, G. et al. Staphylococcal pathogenicity island interference with helper phage reproduction is a paradigmofmolecular parasitism. Proc. Natl Acad. Sci. USA 109, 16300-16305 (2012).
-
(2012)
Proc. Natl Acad. Sci. USA
, vol.109
, pp. 16300-16305
-
-
Ram, G.1
-
22
-
-
79959963663
-
Interference by clustered regularly interspaced short palindromicrepeat (CRISPR)RNAis governed by a seed sequence
-
Semenova, E. et al. Interference by clustered regularly interspaced short palindromicrepeat (CRISPR)RNAis governed by a seed sequence. Proc.NatlAcad. Sci. USA 108, 10098-10103 (2011).
-
(2011)
Proc.NatlAcad. Sci. USA
, vol.108
, pp. 10098-10103
-
-
Semenova, E.1
-
23
-
-
84864864464
-
Molecular memory of prior infections activates the CRISPR/Cas adaptive bacterial immunity system
-
Datsenko, K. A. et al. Molecular memory of prior infections activates the CRISPR/Cas adaptive bacterial immunity system. Nature Commun. 3, 945-947 (2012).
-
(2012)
Nature Commun
, vol.3
, pp. 945-947
-
-
Datsenko, K.A.1
-
24
-
-
84860433123
-
CRISPR interference directs strand specific spacer acquisition
-
Swarts, D. C., Mosterd, C., van Passel, M. W. J.& Brouns, S. J. J. CRISPR interference directs strand specific spacer acquisition. PLoS ONE 7, e35888 (2012).
-
(2012)
PLoS ONE
, vol.7
-
-
Swarts, D.C.1
Mosterd, C.2
Van Passel, M.W.J.3
Brouns, S.J.J.4
-
25
-
-
33745550745
-
The multidrug-resistant human pathogen Clostridium difficile has a highly mobile, mosaic genome
-
Sebaihia, M. et al. The multidrug-resistant human pathogen Clostridium difficile has a highly mobile, mosaic genome. Nature Genet. 38, 779-786 (2006).
-
(2006)
Nature Genet
, vol.38
, pp. 779-786
-
-
Sebaihia, M.1
-
26
-
-
80053528043
-
The human gut virome: Inter-individual variation and dynamic response to diet
-
Minot, S. et al. The human gut virome: inter-individual variation and dynamic response to diet. Genome Res. 21, 1616-1625 (2011).
-
(2011)
Genome Res
, vol.21
, pp. 1616-1625
-
-
Minot, S.1
-
27
-
-
84859149175
-
Reconstructing viral genomes from the environment using fosmid clones: The case of haloviruses
-
Garcia-Heredia, I. et al. Reconstructing viral genomes from the environment using fosmid clones: the case of haloviruses. PLoS ONE 7, e33802 (2012).
-
(2012)
PLoS ONE
, vol.7
-
-
Garcia-Heredia, I.1
-
28
-
-
84874370010
-
Homopolymer tail-mediated ligation PCR: A streamlined and highly efficientmethod for DNAcloning and library construction
-
Lazinski, D. W. L. & Camilli, A. Homopolymer tail-mediated ligation PCR: a streamlined and highly efficientmethod for DNAcloning and library construction. Biotechniques 54, 25-34 (2013).
-
(2013)
Biotechniques
, vol.54
, pp. 25-34
-
-
Lazinski, D.W.L.1
Camilli, A.2
-
29
-
-
2142738304
-
WebLogo: A sequence logo generator
-
Crooks, G. E., Hon, G., Chandonia, J. M. & Brenner, S. E. WebLogo: a sequence logo generator. Genome Res. 14, 1188-1190 (2004).
-
(2004)
Genome Res
, vol.14
, pp. 1188-1190
-
-
Crooks, G.E.1
Hon, G.2
Chandonia, J.M.3
Brenner, S.E.4
-
30
-
-
77956885050
-
Genetic manipulation of Vibrio cholerae by combining natural transformation with FLP recombination
-
De Souza Silva, O. & Blokesch, M. Genetic manipulation of Vibrio cholerae by combining natural transformation with FLP recombination. Plasmid 64, 186-195 (2010).
-
(2010)
Plasmid
, vol.64
, pp. 186-195
-
-
De Souza Silva, O.1
Blokesch, M.2
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