-
1
-
-
33746377894
-
Protein misfolding, functional amyloid, and human disease
-
Chiti F, Dobson CM, (2006) Protein misfolding, functional amyloid, and human disease. Annu Rev Biochem 75: 333-366.
-
(2006)
Annu Rev Biochem
, vol.75
, pp. 333-366
-
-
Chiti, F.1
Dobson, C.M.2
-
2
-
-
84857636679
-
A cyclic peptide inhibitor of apoC-II peptide fibril formation: mechanistic insight from NMR and molecular dynamics analysis
-
Griffin MD, Yeung L, Hung A, Todorova N, Mok YF, et al. (2012) A cyclic peptide inhibitor of apoC-II peptide fibril formation: mechanistic insight from NMR and molecular dynamics analysis. J Mol Biol 416: 642-655.
-
(2012)
J Mol Biol
, vol.416
, pp. 642-655
-
-
Griffin, M.D.1
Yeung, L.2
Hung, A.3
Todorova, N.4
Mok, Y.F.5
-
3
-
-
0037328180
-
Conformational restriction via cyclization in beta-amyloid peptide A beta(1-28) leads to an inhibitor of A beta(1-28) amyloidogenesis and cytotoxicity
-
Kapurniotu A, Buck A, Weber M, Schmauder A, Hirsch T, et al. (2003) Conformational restriction via cyclization in beta-amyloid peptide A beta(1-28) leads to an inhibitor of A beta(1-28) amyloidogenesis and cytotoxicity. Chem Biol 10: 149-159.
-
(2003)
Chem Biol
, vol.10
, pp. 149-159
-
-
Kapurniotu, A.1
Buck, A.2
Weber, M.3
Schmauder, A.4
Hirsch, T.5
-
4
-
-
79952263121
-
Macrocyclic beta-sheet peptides that inhibit the aggregation of a tau-protein-derived hexapeptide
-
Zheng J, Liu C, Sawaya MR, Vadla B, Khan S, et al. (2011) Macrocyclic beta-sheet peptides that inhibit the aggregation of a tau-protein-derived hexapeptide. J Am Chem Soc 133: 3144-3157.
-
(2011)
J Am Chem Soc
, vol.133
, pp. 3144-3157
-
-
Zheng, J.1
Liu, C.2
Sawaya, M.R.3
Vadla, B.4
Khan, S.5
-
5
-
-
69249124948
-
Rapid selection of cyclic peptides that reduce alpha-synuclein toxicity in yeast and animal models
-
Kritzer JA, Hamamichi S, McCaffery JM, Santagata S, Naumann TA, et al. (2009) Rapid selection of cyclic peptides that reduce alpha-synuclein toxicity in yeast and animal models. Nat Chem Biol 5: 655-663.
-
(2009)
Nat Chem Biol
, vol.5
, pp. 655-663
-
-
Kritzer, J.A.1
Hamamichi, S.2
McCaffery, J.M.3
Santagata, S.4
Naumann, T.A.5
-
6
-
-
0028933794
-
Peptide antibiotics and their role in innate immunity
-
Boman HG, (1995) Peptide antibiotics and their role in innate immunity. Annu Rev Immunol 13: 61-92.
-
(1995)
Annu Rev Immunol
, vol.13
, pp. 61-92
-
-
Boman, H.G.1
-
7
-
-
10744229371
-
The circularization of amyloid fibrils formed by apolipoprotein C-II
-
Hatters DM, MacRaild CA, Daniels R, Gosal WS, Thomson NH, et al. (2003) The circularization of amyloid fibrils formed by apolipoprotein C-II. Biophys J 85: 3979-3990.
-
(2003)
Biophys J
, vol.85
, pp. 3979-3990
-
-
Hatters, D.M.1
MacRaild, C.A.2
Daniels, R.3
Gosal, W.S.4
Thomson, N.H.5
-
8
-
-
78751578988
-
A structural model for apolipoprotein C-II amyloid fibrils: experimental characterization and molecular dynamics simulations
-
Teoh CL, Pham CL, Todorova N, Hung A, Lincoln CN, et al. (2011) A structural model for apolipoprotein C-II amyloid fibrils: experimental characterization and molecular dynamics simulations. J Mol Biol 405: 1246-1266.
-
(2011)
J Mol Biol
, vol.405
, pp. 1246-1266
-
-
Teoh, C.L.1
Pham, C.L.2
Todorova, N.3
Hung, A.4
Lincoln, C.N.5
-
9
-
-
33846847762
-
A structural core within apolipoprotein C-II amyloid fibrils identified using hydrogen exchange and proteolysis
-
Wilson LM, Mok YF, Binger KJ, Griffin MD, Mertens HD, et al. (2007) A structural core within apolipoprotein C-II amyloid fibrils identified using hydrogen exchange and proteolysis. J Mol Biol 366: 1639-1651.
-
(2007)
J Mol Biol
, vol.366
, pp. 1639-1651
-
-
Wilson, L.M.1
Mok, Y.F.2
Binger, K.J.3
Griffin, M.D.4
Mertens, H.D.5
-
10
-
-
55349140721
-
Effects of oxidation, pH and lipids on amyloidogenic peptide structure: implications for fibril formation?
-
Hung A, Griffin MD, Howlett GJ, Yarovsky I, (2008) Effects of oxidation, pH and lipids on amyloidogenic peptide structure: implications for fibril formation? Eur Biophys J 38: 99-110.
-
(2008)
Eur Biophys J
, vol.38
, pp. 99-110
-
-
Hung, A.1
Griffin, M.D.2
Howlett, G.J.3
Yarovsky, I.4
-
11
-
-
78149239347
-
Effects of mutation on the amyloidogenic propensity of apolipoprotein C-II60-70 peptide
-
Todorova N, Hung A, Maaser SM, Griffin MDW, Karas J, et al. (2010) Effects of mutation on the amyloidogenic propensity of apolipoprotein C-II60-70 peptide. Phys Chem Chem Phys 12: 14762-14774.
-
(2010)
Phys Chem Chem Phys
, vol.12
, pp. 14762-14774
-
-
Todorova, N.1
Hung, A.2
Maaser, S.M.3
Griffin, M.D.W.4
Karas, J.5
-
12
-
-
0029619259
-
Knowledge-based protein secondary structure assignment
-
Frishman D, Argos P, (1995) Knowledge-based protein secondary structure assignment. Proteins: Struct Funct Genet 23: 566-579.
-
(1995)
Proteins: Struct Funct Genet
, vol.23
, pp. 566-579
-
-
Frishman, D.1
Argos, P.2
-
13
-
-
0037144424
-
Amyloid fibril formation by pentapeptide and tetrapeptide fragments of human calcitonin
-
Reches M, Porat Y, Gazit E, (2002) Amyloid fibril formation by pentapeptide and tetrapeptide fragments of human calcitonin. J Biol Chem 277: 35475-35480.
-
(2002)
J Biol Chem
, vol.277
, pp. 35475-35480
-
-
Reches, M.1
Porat, Y.2
Gazit, E.3
-
14
-
-
34547913439
-
A primer of amyloid nomenclature
-
Westermark P, Benson MD, Buxbaum JN, Cohen AS, Frangione B, et al. (2007) A primer of amyloid nomenclature. Amyloid 14: 179-183.
-
(2007)
Amyloid
, vol.14
, pp. 179-183
-
-
Westermark, P.1
Benson, M.D.2
Buxbaum, J.N.3
Cohen, A.S.4
Frangione, B.5
-
15
-
-
28244458451
-
Mechanisms of amyloid fibril self-assembly and inhibition. Model short peptides as a key research tool
-
Gazit E, (2005) Mechanisms of amyloid fibril self-assembly and inhibition. Model short peptides as a key research tool. FEBS Journal 272: 5971-5978.
-
(2005)
FEBS Journal
, vol.272
, pp. 5971-5978
-
-
Gazit, E.1
-
16
-
-
3042584515
-
The role of aromaticity, exposed surface, and dipole moment in determining protein aggregation rates
-
Tartaglia GG, Cavalli A, Pellarin R, Caflisch A, (2004) The role of aromaticity, exposed surface, and dipole moment in determining protein aggregation rates. Protein Sci 13: 1939-1941.
-
(2004)
Protein Sci
, vol.13
, pp. 1939-1941
-
-
Tartaglia, G.G.1
Cavalli, A.2
Pellarin, R.3
Caflisch, A.4
-
17
-
-
67650323736
-
Lipids enhance apolipoprotein C-II derived amyloidogenic peptide oligomerisation but inhibit fibril formation
-
Hung A, Griffin MDW, Howlett GJ, Yarovsky I, (2009) Lipids enhance apolipoprotein C-II derived amyloidogenic peptide oligomerisation but inhibit fibril formation. J Phys Chem B 113: 9447-9453.
-
(2009)
J Phys Chem B
, vol.113
, pp. 9447-9453
-
-
Hung, A.1
Griffin, M.D.W.2
Howlett, G.J.3
Yarovsky, I.4
-
18
-
-
79751532682
-
Inhibition of peptide aggregation by lipids: insights from coarse-grained molecular simulations
-
Hung A, Yarovsky I, (2011) Inhibition of peptide aggregation by lipids: insights from coarse-grained molecular simulations. J Mol Graph Model 29: 597-607.
-
(2011)
J Mol Graph Model
, vol.29
, pp. 597-607
-
-
Hung, A.1
Yarovsky, I.2
-
19
-
-
77953372531
-
Lipid concentration effects of the amyloidogenic apoC-II60-70 peptide: A computational study
-
Todorova N, Hung A, Yarovsky I, (2010) Lipid concentration effects of the amyloidogenic apoC-II60-70 peptide: A computational study. J Phys Chem B 114: 7974-7982.
-
(2010)
J Phys Chem B
, vol.114
, pp. 7974-7982
-
-
Todorova, N.1
Hung, A.2
Yarovsky, I.3
-
20
-
-
27344454932
-
GROMACS: Fast, flexible, and free
-
van der Spoel D, Lindahl E, Hess B, Groenhof G, Mark AE, et al. (2005) GROMACS: Fast, flexible, and free. J Comput Chem 26: 1701-1718.
-
(2005)
J Comput Chem
, vol.26
, pp. 1701-1718
-
-
van der Spoel, D.1
Lindahl, E.2
Hess, B.3
Groenhof, G.4
Mark, A.E.5
-
22
-
-
0029633155
-
The calculation of the potential of mean force using computer-simulations
-
Roux B, (1995) The calculation of the potential of mean force using computer-simulations. Comput Phys Commun 91: 275-282.
-
(1995)
Comput Phys Commun
, vol.91
, pp. 275-282
-
-
Roux, B.1
-
23
-
-
84986519238
-
THE weighted histogram analysis method for free-energy calculations on biomolecules. I. The method
-
Kumar S, Rosenberg JM, Bouzida D, Swendsen RH, Kollman PA, (1992) THE weighted histogram analysis method for free-energy calculations on biomolecules. I. The method. J Comp Chem 13: 1011-1021.
-
(1992)
J Comp Chem
, vol.13
, pp. 1011-1021
-
-
Kumar, S.1
Rosenberg, J.M.2
Bouzida, D.3
Swendsen, R.H.4
Kollman, P.A.5
-
24
-
-
22944446425
-
Introducing ONETEP: Linear-scaling density functional simulations on parallel computers
-
Skylaris CK, Haynes PD, Mostofi AA, Payne MC, (2005) Introducing ONETEP: Linear-scaling density functional simulations on parallel computers. J Chem Phys 122: 084119.
-
(2005)
J Chem Phys
, vol.122
, pp. 084119
-
-
Skylaris, C.K.1
Haynes, P.D.2
Mostofi, A.A.3
Payne, M.C.4
-
25
-
-
79960959128
-
Interrogation of the protein-protein interactions between human BRCA2 BRC repeats and RAD51 reveals atomistic determinants of affinity
-
Cole DJ, Rajendra E, Roberts-Thomson M, Hardwick B, McKenzie GJ, et al. (2011) Interrogation of the protein-protein interactions between human BRCA2 BRC repeats and RAD51 reveals atomistic determinants of affinity. PLoS Comput Biol 7: e1002096.
-
(2011)
PLoS Comput Biol
, vol.7
-
-
Cole, D.J.1
Rajendra, E.2
Roberts-Thomson, M.3
Hardwick, B.4
McKenzie, G.J.5
-
26
-
-
67349285351
-
Linear-scaling density-functional theory with tens of thousands of atoms: Expanding the scope and scale of calculations with ONETEP
-
Hine NDM, Haynes PD, Mostofi AA, Skylaris CK, Payne MC, (2009) Linear-scaling density-functional theory with tens of thousands of atoms: Expanding the scope and scale of calculations with ONETEP. Comput Phys Commun 180: 1041-1053.
-
(2009)
Comput Phys Commun
, vol.180
, pp. 1041-1053
-
-
Hine, N.D.M.1
Haynes, P.D.2
Mostofi, A.A.3
Skylaris, C.K.4
Payne, M.C.5
-
27
-
-
2842565972
-
Generalized gradient approximation for the exchange-correlation hole of a many-electron system
-
Perdew JP, Burke K, Wang Y, (1996) Generalized gradient approximation for the exchange-correlation hole of a many-electron system. Phys Rev B 54: 16533-16539.
-
(1996)
Phys Rev B
, vol.54
, pp. 16533-16539
-
-
Perdew, J.P.1
Burke, K.2
Wang, Y.3
-
28
-
-
0035932162
-
Hydrogen bonding and stacking interactions of nucleic acid base pairs: A density-functional-theory based treatment
-
Elstner M, Hobza P, Frauenheim T, Suhai S, Kaxiras E, (2001) Hydrogen bonding and stacking interactions of nucleic acid base pairs: A density-functional-theory based treatment. J Chem Phys 114: 5149-5155.
-
(2001)
J Chem Phys
, vol.114
, pp. 5149-5155
-
-
Elstner, M.1
Hobza, P.2
Frauenheim, T.3
Suhai, S.4
Kaxiras, E.5
-
29
-
-
67149114950
-
Including dispersion interactions in the ONETEP program for linear-scaling density functional theory calculations
-
Skylaris CK, Hill Q, (2009) Including dispersion interactions in the ONETEP program for linear-scaling density functional theory calculations. Proc Math Phys Eng Sci 465: 669-683.
-
(2009)
Proc Math Phys Eng Sci
, vol.465
, pp. 669-683
-
-
Skylaris, C.K.1
Hill, Q.2
|