Successional colonization of perennial ryegrass by rumen bacteria

Letters in Applied Microbiology

Volumn 56, Issue 3, 2013, Pages 186-196

  Huws, S A ^a   Mayorga, O L ^a,d   Theodorou, M K ^a,e   Onime, L A ^b   Kim, E J ^c   Cookson, A H ^a   Newbold, C J ^a   Kingston Smith, A H ^a  

^a ABERYSTWYTH UNIVERSITY   (United Kingdom)

^b UNIVERSITY OF UDINE   (Italy)

^c Kyungpook National University   (South Korea)

^d CENTRO DE INVESTIGACIÓN TIBAITATÁ   (Colombia)

^e DURHAM UNIVERSITY   (United Kingdom)

Author keywords

Bacteria; Colonization; DGGE; Plant; QPCR; Rumen; Temporal

Indexed keywords

POLYMERASE CHAIN REACTION; SCANNING ELECTRON MICROSCOPY; TEMPERATURE;

COLONISATION; DGGE; MICROBIOTAS; PERENNIAL RYEGRASS; PLANT; PREVOTELLA; QPCR; RUMEN; RUMEN BACTERIA; TEMPORAL;

BACTERIA;

DNA 16S;

ASSESSMENT METHOD; BACTERIUM; CLASSIFICATION; COLONIZATION; GRASS; PERENNIAL PLANT; POLYMER; POLYMERASE CHAIN REACTION; POPULATION STRUCTURE; RUMINANT; SUCCESSION; TEMPORAL ANALYSIS;

ANIMAL EXPERIMENT; ARTICLE; BACTERIAL COLONIZATION; COW; LOW TEMPERATURE PROCEDURES; MICROBIAL DIVERSITY; NONHUMAN; PERENNIAL RYEGRASS; POLYMERIZATION; PREVOTELLA; RUMEN MICROORGANISM; SCANNING ELECTRON MICROSCOPE; SCANNING ELECTRON MICROSCOPY;

BACTERIA (MICROORGANISMS); LOLIUM PERENNE; PREVOTELLA;

EID: 84874108452     PISSN: 02668254     EISSN: 1472765X     Source Type: Journal    
DOI: 10.1111/lam.12033     Document Type: Article

References (32)

1. Beha, E.M., Theodorou, M.K. and Kingston-Smith, A.H. (2002) Grass cells ingested by ruminants undergo autolysis which differs from senescence: implications for grass breeding targets and livestock production. Plant Cell Environ 25, 1299-1312.
2. Bowman, J.G.P. and Firkins, J.L. (1993) Effects of forage species and particle size on bacterial cellulolytic activity and colonization in situ. J Anim Sci 71, 1623-1633.
3. Cheng, K.J., Fay, J.P., Howarth, R.E. and Costerton, J.W. (1980) Sequence of events in the digestion of fresh legume leaves by rumen bacteria. Appl Environ Microbiol 40, 613-625.
4. Cole, J.R., Chai, B., Farris, R.J., Wang, Q., Kulam, S.A., McGarrell, D.M., Garrity, G.M. and Tiedje, J.M. (2005) The ribosomal database project (RDP-II): sequences and tools for high-throughput rRNA analysis. Nucleic Acids Res 33, D294-D296.
5. Dewhurst, R.J., Mitton, A.M., Offer, N.W. and Thomas, C. (1996) Effect of the composition of grass silages on milk production and nitrogen utilisation by dairy cows. Animal Sci 62, 25-34.
6. Duncan, B.B. (1955) Multiple range and multiple F-test. Biometrics 11, 1-42.
7. Edwards, J.E., McEwan, N.R., Travis, A.J. and Wallace, R.J. (2004) 16S rDNA library-based analysis of ruminal bacterial diversity. Anton Leeuw Int J G 86, 263-281.
8. Edwards, J.E., Huws, S.A., Kim, E.J. and Kingston-Smith, A.H. (2007) Characterisation of the dynamics of initial bacterial colonisation of nonconserved forage in the bovine rumen. FEMS Microbiol Ecol 62, 323-335.
9. Edwards, A.H., Kingston-Smith, A.H., Jiminez, H.R., Huws, S.A., Skot, K.P., Griffith, G.W., McEwan, N.R. and Theodorou, M.K. (2008) Dynamics of initial colonisation of non-conserved perennial ryegrass by anaerobic fungi in the bovine rumen. FEMS Microbiol Ecol 66, 537-545.
10. FAOSTAT (2009) Online at http://faostat.fao.org/
11. Huws, S.A., Lee, M.R.F., Muetzel, S.M., Scott, M.B., Wallace, R.J., Scollan, N.D. and Scollan, N.D. (2010) Forage type and fish oil cause shifts in rumen bacterial diversity. FEMS Microbiol Ecol 73, 396-407.
12. Kim, E.J., Huws, S.A., Lee, M.R.F., Wood, J.D., Muetzel, S.M., Wallace, R.J. and Scollan, N.D. (2008) Fish oil increases the duodenal flow of long chain polyunsaturated fatty acids and trans-11 18:1 and decreases 18:0 in steers via changes in the rumen bacterial community. J Nutr 138, 889-896.
13. Kim, M., Morrison, M. and Yu, Z. (2011) Status of the phylogenetic diversity census of the ruminal microbiomes. FEMS Microbiol Ecol 76, 49-63.
14. Kingston-Smith, A.H., Bollard, A.L., Armstead, I.P., Thomas, B.J. and Theodorou, M.K. (2003) Proteolysis and cell death in clover leaves is induced by grazing. Protoplasma 220, 119-129.
15. Kingston-Smith, A.H., Davies, T.E., Edwards, J.E. and Theodorou, M.K. (2008) From plants to animals; the role of plant cell death in ruminant herbivores. J Exp Bot 59, 521-532.
16. Kingston-Smith, A.H., Edwards, J.E., Huws, S.A., Kim, E.J. and Abberton, M. (2010) Plant-based strategies towards minimising livestock's shadow. Proc Nut Soc 4, 1-8.
17. Koike, S. and Kobayashi, Y. (2001) Development and use of competitive PCR assays for the rumen bacteria: Fibrobacter succinogenes, Ruminococcus albus and Ruminococcus flavefaciens. FEMS Microbiol Lett 13, 361-366.
18. Koike, S., Pan, J., Kobayashi, Y. and Tanaka, K. (2003) Kinetics of in sacco fibre-attachment of representative ruminal cellulolytic bacteria monitored by competitive PCR. J Dairy Sci 86, 1429-1435.
19. Kudo, H., Cheng, K.J. and Costerton, J.W. (1987) Interactions between Treponema bryantii and cellulolytic bacteria in the in vitro degradation of straw cellulose. Can J Microbiol 33, 244-248.
20. Latham, M.J., Brooker, B.E., Pettipher, G.L. and Harris, P.J. (1978) Adhesion of Bacteroides succinogenes in pure culture and in the presence of Ruminococcus flaveciens to cell wall in leaves of perennial ryegrass (Lolium perenne). Appl Environ Microbiol 35, 1166-1173.
21. MacRae, J.C. and Ulyatt, M.J. (1974) Quantitative digestion of fresh herbage by sheep. 2. Sites of some nitrogenous constituents. J Agric Sci 82, 309-319.
22. Marzorati, M., Wittebolle, L., Boon, N., Daffonchio, D. and Verstraete, W. (2008) How to get more out of molecular fingerprints: practical tools for microbial ecology. Environ Microbiol 10, 1571-1581.
23. McAllister, T.A., Bae, H.D., Jones, G.A. and Cheng, K.J. (1994) Microbial attachment and feed digestion in the rumen. J Anim Sci 72, 3004-3018.
24. Miron, J., Ben-Ghedalia, D. and Morrison, M. (2001) Invited review: adhesion mechanisms of rumen cellulolytic bacteria. J Dairy Sci 84, 1294-1309.
25. Ørskov, E.R., DeB Hovell, F.D. and Mould, F. (1980) The use of the nylon bag technique for the evaluation of feedstuffs. Trop Anim Prod 5, 195-213.
26. ™ 9th Edition, Introduction. Hemel Hempstead, UK: VSN International.
27. Russell, J.B. and Rychlik, J.L. (2001) Factors that alter rumen microbial ecology. Science 292, 1119-1122.
28. Schlüter, P.M. and Harris, S.A. (2006) Analysis of multilocus fingerprinting data sets containing missing data. Mol Ecol Notes 6, 569-572.
29. Stevenson, D.M. and Weimer, P.J. (2007) Dominance of Prevotella and low abundance of classical ruminal bacterial species in the bovine rumen revealed by relative quantitation real-time PCR. Appl Microbiol Biotechnol 75, 165-174.
30. Tajima, K., Aminov, R.I., Nagamine, T., Matsui, H., Nakamura, M. and Benno, Y. (2001) Diet-dependent shifts in the bacterial population of the rumen revealed with real-time PCR. Appl Environ Microbiol 67, 2766-2774.
31. Vanzant, E.S., Cochran, R.C. and Titgemeyer, E.C. (1998) Standardization of in situ techniques for ruminant feedstuff evaluation. J Anim Sci 76, 2717-2729.
32. Wolin, M.J. and Miller, T.L. (1988). Microbe-microbe interactions. In The Rumen Microbial Ecosystem ed. Hobson, P.N. New York, NY: Elsevier Science Publishing.