Flavitalea gansuensis sp. nov., isolated from soil from an arid area, and emended descriptions of the genus Flavitalea and Flavitalea populi

International Journal of Systematic and Evolutionary Microbiology

Volumn 63, Issue PART2, 2013, Pages 490-495

  Zhang, Lei ^a   Qin, Baofu ^a   Jia, Zhihua ^a   Wei, Gehong ^a  

^a NORTHWEST A F UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; FATTY ACID; HOMOSPERMIDINE; MENAQUINONE; PHOSPHATIDYLETHANOLAMINE; POLYAMINE; QUINONE DERIVATIVE; RNA 16S; SODIUM CHLORIDE; SPERMIDINE DERIVATIVE; UNCLASSIFIED DRUG;

ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATION; BACTEROIDETES; CHINA; COMPARATIVE GENE MAPPING; CONTROLLED STUDY; DNA DNA HYBRIDIZATION; FLAVITALEA GANSUENSIS; FLAVITALEA POPULI; GENE SEQUENCE; GENOTYPE PHENOTYPE CORRELATION; GRAM NEGATIVE BACTERIUM; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLUM; PRIORITY JOURNAL; SOIL MICROFLORA;

BACTERIAL TYPING TECHNIQUES; BACTEROIDETES; BASE COMPOSITION; CHINA; DNA, BACTERIAL; FATTY ACIDS; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PHOSPHOLIPIDS; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY; SPERMIDINE; VITAMIN K 2;

EID: 84874053466     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.038455-0     Document Type: Article

References (28)

1. Asker, D., Beppu, T. & Ueda, K. (2007). Zeaxanthinibacter enoshimensis gen. nov., sp. nov., a novel zeaxanthin-producing marine bacterium of the family Flavobacteriaceae, isolated from seawater off Enoshima Island, Japan. Int J Syst Evol Microbiol 57, 837-843.
2. Ausubel, F. W., Brent, R., Kingston, R. E., Moore, D. D., Seidman, J. G., Smith, J. A. & Struhl, K. (1995). Preparation and analysis of DNA. In Current Protocols in Molecular Biology. New York: Wiley.
3. Bernardet, J.-F., Nakagawa, Y., Holmes, B. &Subcommittee on the taxonomy of Flavobacterium and Cytophaga-like bacteria of the International Committee on Systematics of Prokaryotes (2002). Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family. Int J Syst Evol Microbiol 52, 1049-1070.
4. Bowman, J. P. (2000). Description of Cellulophaga algicola sp. nov., isolated from the surfaces of Antarctic algae, and reclassification of Cytophaga uliginosa (ZoBell and Upham 1944) Reichenbach 1989 as Cellulophaga uliginosa comb. nov. Int J Syst Evol Microbiol 50, 1861-1868.
5. Busse, H.-J. & Auling, G. (1988). Polyamine pattern as a chemotaxo- nomic marker within the Proteobacteria. Syst Appl Microbiol 11, 1-8.
6. Doetsch, R. N. (1981). Determinative methods of light microscopy. In Manual of Methods for General Bacteriology, pp. 21-33. Edited by P. Gerhardt, R. G. E. Murray, R. N. Costilow, E. W. Nester, W. A. Wood, N. R. Krieg & G. B. Phillips. Washington, DC: American Society for Microbiology.
7. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in micro- dilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
8. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
9. Felsenstein, J. (2006). PHYLIP (phylogeny inference package), v3. 66. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, USA.
10. Fitch, W. M. (1971). Towards defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406-416.
11. Kim, O.-S., Cho, Y.-J., Lee, K., Yoon, S.-H., Kim, M., Na, H., Park, S.-C., Jeon, Y. S., Lee, J.-H. & other authors (2012). Introducing EzTaxone: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62, 716-721.
12. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
13. Lane, D. J. (1991). 16S-23S rRNA sequencing. In Nucleic Acid Techniques in Bacterial Systematics, pp. 125-175. Edited by E. Stackebrandt & M. Goodfellow. Chichester: Wiley.
14. Lin, Y.-C., Uemori, K., de Briel, D. A., Arunpairojana, V. & Yokota, A. (2004). Zimmermannella helvola gen. nov., sp. nov., Zimmermannella alba sp. nov., Zimmermannella bifida sp. nov., Zimmermannella faecalis sp. nov. and Leucobacter albus sp. nov., novel members of the family Microbacteriaceae. Int J Syst Evol Microbiol 54, 1669-1676.
15. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by high- performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
16. Reichenbach, H., Kohl, W., Bottger-Vetter, A. & Achenbach, H. (1980). Flexirubin-type pigments in Flavobacterium. Arch Microbiol 126, 291-293.
17. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
18. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. Newark, DE: MIDI.
19. Schenkel, E., Berlaimont, V., Dubois, J., Helson-Cambier, M. & Hanocq, M. (1995). Improved high-performance liquid chromato- graphic method for the determination of polyamines as their benzoylated derivatives: application to P388 cancer cells. J Chromatogr B Biomed Appl 668, 189-197.
20. Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607-654. Edited by P. Gerhardt, R. G. E. Murray, W. A. Woods & N. R. Krieg. Washington, DC: American Society for Microbiology.
21. Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4. 0. Mol Biol Evol 24, 1596-1599.
22. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X Windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
23. Tindall, B. J. (1990). A comparative study of the lipid composition of Halobacterium saccharovorum from various sources. Syst Appl Microbiol 13, 128-130.
24. Wang, Y., Cai, F., Tang, Y., Dai, J., Qi, H., Rahman, E., Peng, F. & Fang, C. (2011). Flavitalea populi gen. nov., sp. nov., isolated from soil of a Euphrates poplar (Populus euphratica) forest. Int J Syst Evol Microbiol 61, 1554-1560.
25. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
26. Weeks, O. B. (1981). Preliminary studies of the pigments of Flavobacterium breve NCTC 11099 and Flavobacterium odoratum NCTC 11036. In The Flavobacterium-Cytophaga Group, pp. 109-114. Edited by H. Reichenbach & O. B. Weeks. Weinheim: Gesellschaft fur Biotechnologische Forschung.
27. Xie, C. H. & Yokota, A. (2003). Phylogenetic analyses of Lampropedia hyalina based on the 16S rRNA gene sequence. J Gen Appl Microbiol 49, 345-349.
28. Xu, P., Li, W.-J., Tang, S.-K., Zhang, Y.-Q., Chen, G.-Z., Chen, H.-H., Xu, L.-H. & Jiang, C.-L. (2005). Naxibacter alkalitolerans gen. nov., sp. nov., a novel member of the family 'Oxalobacteraceae' isolated from China. Int J Syst Evol Microbiol 55, 1149-1153.