Position-specific scoring matrix and hidden Markov model complement each other for the prediction of conopeptide superfamilies

Biochimica et Biophysica Acta - Proteins and Proteomics

Volumn 1834, Issue 4, 2013, Pages 717-724

  Koua, Dominique ^a,b   Laht, Silja ^c   Kaplinski, Lauris ^c   Stöcklin, Reto ^a   Remm, Maido ^c   Favreau, Philippe ^a   Lisacek, Frédérique ^b  

^a ATHERIS LABORATORIES   (Switzerland)

^b SWISS INSTITUTE OF BIOINFORMATICS   (Switzerland)

^c UNIVERSITY OF TARTU   (Estonia)

Author keywords

Combined prediction; Conopeptide; Hidden Markov model; Position specific scoring matrix; Protein family prediction

Indexed keywords

CONOPEPTIDE; CONOTOXIN; PROTEIN PRECURSOR; SIGNAL PEPTIDE; SNAIL VENOM; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; ARTICLE; CLASSIFICATION; GENOMICS; HIDDEN MARKOV MODEL; NONHUMAN; POSITION WEIGHT MATRIX; PREDICTION; PRIORITY JOURNAL; PROTEIN DETERMINATION; PROTEIN FAMILY; PROTEIN STRUCTURE; SNAIL; TRANSCRIPTOMICS; VALIDATION PROCESS;

AMINO ACIDS; ANIMALS; COMPUTATIONAL BIOLOGY; CONUS SNAIL; MARKOV CHAINS; PEPTIDES; SEQUENCE ANALYSIS, PROTEIN; VENOMS;

GASTROPODA;

EID: 84874039359     PISSN: 15709639     EISSN: 18781454     Source Type: Journal    
DOI: 10.1016/j.bbapap.2012.12.015     Document Type: Article

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