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Volumn 72, Issue 10, 2012, Pages 2512-2521

AMPKα modulation in cancer progression: Multilayer integrative analysis of the whole transcriptome in Asian gastric cancer

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; MICRORNA; TRANSCRIPTOME;

EID: 84861142867     PISSN: 00085472     EISSN: 15387445     Source Type: Journal    
DOI: 10.1158/0008-5472.CAN-11-3870     Document Type: Article
Times cited : (90)

References (39)
  • 1
    • 33646568784 scopus 로고    scopus 로고
    • Patterns of cancer incidence, mortality, and prevalence across five continents: Defining priorities to reduce cancer disparities in different geographic regions of the world
    • DOI 10.1200/JCO.2005.05.2308
    • Kamangar F, Dores GM, Anderson WF. Patterns of cancer incidence, mortality, and prevalence across five continents: defining priorities to reduce cancer disparities in different geographic regions of the world. J Clin Oncol 2006;24:2137-50. (Pubitemid 46655601)
    • (2006) Journal of Clinical Oncology , vol.24 , Issue.14 , pp. 2137-2150
    • Kamangar, F.1    Dores, G.M.2    Anderson, W.F.3
  • 2
    • 51049091878 scopus 로고    scopus 로고
    • Incidence of adenocarcinoma of the esophagus among white Americans by sex, stage, and age
    • Brown LM, Devesa SS, Chow WH. Incidence of adenocarcinoma of the esophagus among white Americans by sex, stage, and age. J Natl Cancer Inst 2008;100:1184-7.
    • (2008) J Natl Cancer Inst , vol.100 , pp. 1184-1187
    • Brown, L.M.1    Devesa, S.S.2    Chow, W.H.3
  • 5
    • 34250887474 scopus 로고    scopus 로고
    • Taking gene-expression profiling to the clinic: When will molecular signatures become relevant to patient care?
    • DOI 10.1038/nrc2173, PII NRC2173
    • Sotiriou C, Piccart MJ. Taking gene-expression profiling to the clinic: when will molecular signatures become relevant to patient care? Nature Reviews Cancer 2007;7:545-53. (Pubitemid 46985399)
    • (2007) Nature Reviews Cancer , vol.7 , Issue.7 , pp. 545-553
    • Sotiriou, C.1    Piccart, M.J.2
  • 6
    • 33745145845 scopus 로고    scopus 로고
    • Embracing the complexity of genomic data for personalized medicine
    • West M, Ginsburg GS, Huang AT, Nevins JR. Embracing the complexity of genomic data for personalized medicine. Genome Res 2006;16:559-66.
    • (2006) Genome Res , vol.16 , pp. 559-566
    • West, M.1    Ginsburg, G.S.2    Huang, A.T.3    Nevins, J.R.4
  • 7
    • 75249107416 scopus 로고    scopus 로고
    • Relation between microRNA expression and progression and prognosis of gastric cancer: A microRNAexpression analysis
    • Ueda T, Volinia S, Okumura H, Shimizu M, Taccioli C, Rossi S, et al. Relation between microRNA expression and progression and prognosis of gastric cancer: a microRNAexpression analysis. Lancet Oncol 2010;11:136-46.
    • (2010) Lancet Oncol , vol.11 , pp. 136-146
    • Ueda, T.1    Volinia, S.2    Okumura, H.3    Shimizu, M.4    Taccioli, C.5    Rossi, S.6
  • 9
    • 79952356464 scopus 로고    scopus 로고
    • An integrated transcriptomic and computational analysis for biomarker identification in gastric cancer
    • Cui J, Chen Y, Chou WC, Sun L, Chen L, Suo J, et al. An integrated transcriptomic and computational analysis for biomarker identification in gastric cancer. Nucleic Acids Res 2011;39:1197-207.
    • (2011) Nucleic Acids Res , vol.39 , pp. 1197-1207
    • Cui, J.1    Chen, Y.2    Chou, W.C.3    Sun, L.4    Chen, L.5    Suo, J.6
  • 11
    • 57749195712 scopus 로고    scopus 로고
    • RNA-Seq: A revolutionary tool for transcriptomics
    • Wang Z, Gerstein M, Snyder M. RNA-Seq: a revolutionary tool for transcriptomics. Nat Rev Genet 2009;10:57-63.
    • (2009) Nat Rev Genet , vol.10 , pp. 57-63
    • Wang, Z.1    Gerstein, M.2    Snyder, M.3
  • 13
    • 46249106990 scopus 로고    scopus 로고
    • Mapping and quantifying mammalian transcriptomes by RNA-Seq
    • DOI 10.1038/nmeth.1226, PII NMETH.1226
    • Mortazavi A, WilliamsBA, McCue K, Schaeffer L, Wold B. Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat Methods 2008;5:621-8. (Pubitemid 351911867)
    • (2008) Nature Methods , vol.5 , Issue.7 , pp. 621-628
    • Mortazavi, A.1    Williams, B.A.2    McCue, K.3    Schaeffer, L.4    Wold, B.5
  • 16
    • 82255183148 scopus 로고    scopus 로고
    • Exome sequencing identifies frequent mutation of ARID1A in molecular sub-types of gastric cancer
    • Wang K, Kan J, Yuen ST, Shi ST, Chu KM, Law S, et al. Exome sequencing identifies frequent mutation of ARID1A in molecular sub-types of gastric cancer. Nat Genet 2011;43:1219-23.
    • (2011) Nat Genet , vol.43 , pp. 1219-1223
    • Wang, K.1    Kan, J.2    Yuen, S.T.3    Shi, S.T.4    Chu, K.M.5    Law, S.6
  • 17
    • 79960926283 scopus 로고    scopus 로고
    • Antitumor agent PX-12 inhibits HIF-1alpha protein levels through an Nrf2/PMF-1-mediated increase in spermidine/spermine acetyl transferase
    • Kim YH, Coon A, Baker AF, Powis G. Antitumor agent PX-12 inhibits HIF-1alpha protein levels through an Nrf2/PMF-1-mediated increase in spermidine/spermine acetyl transferase. Cancer Chemother Pharmacol 2010;68:405-13.
    • (2010) Cancer Chemother Pharmacol , vol.68 , pp. 405-413
    • Kim, Y.H.1    Coon, A.2    Baker, A.F.3    Powis, G.4
  • 18
    • 44949231424 scopus 로고    scopus 로고
    • T method
    • DOI 10.1038/nprot.2008.73, PII NPROT.2008.73
    • Schmittgen TD, Livak KJ. Analyzing real-time PCR data by the comparative C(T) method. Nat Protoc 2008;3:1101-8. (Pubitemid 351818697)
    • (2008) Nature Protocols , vol.3 , Issue.6 , pp. 1101-1108
    • Schmittgen, T.D.1    Livak, K.J.2
  • 19
    • 0001677717 scopus 로고
    • Controlling the false discovery rate - A practical and powerful approach to multiple testing
    • Benjamini Y, Hochberg Y. Controlling the false discovery rate - a practical and powerful approach to multiple testing. J R Stat Soc 1995;57:289-300.
    • (1995) J R Stat Soc , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 20
    • 78650539308 scopus 로고    scopus 로고
    • From RNA-seq reads to differential expression results
    • Oshlack A, Robinson MD, Young MD. From RNA-seq reads to differential expression results. Genome Biol 2010;11:220.
    • (2010) Genome Biol , vol.11 , pp. 220
    • Oshlack, A.1    Robinson, M.D.2    Young, M.D.3
  • 21
    • 48249153430 scopus 로고    scopus 로고
    • Decreased expression of gastrokine 1 and the trefoil factor interacting protein TFIZ1/GKN2 in gastric cancer: Influence of tumor histology and relationship to prognosis
    • Moss SF, Lee JW, Sabo E, Rubin AK, Rommel J, Westley BR, et al. Decreased expression of gastrokine 1 and the trefoil factor interacting protein TFIZ1/GKN2 in gastric cancer: influence of tumor histology and relationship to prognosis. Clin Cancer Res 2008;14: 4161-7.
    • (2008) Clin Cancer Res , vol.14 , pp. 4161-4167
    • Moss, S.F.1    Lee, J.W.2    Sabo, E.3    Rubin, A.K.4    Rommel, J.5    Westley, B.R.6
  • 22
    • 0027239795 scopus 로고
    • p53 mutation in gastric cancer: A genetic model for carcinogenesis is common to gastric and colorectal cancer
    • Uchino S, Noguchi M, Ochiai A, Saito T, Kobayashi M, Hirohashi S. p53 mutation in gastric cancer: a genetic model for carcinogenesis is common to gastric and colorectal cancer. Int J Cancer 1993;54: 759-64. (Pubitemid 23228606)
    • (1993) International Journal of Cancer , vol.54 , Issue.5 , pp. 759-764
    • Uchino, S.1    Noguchi, M.2    Ochiai, A.3    Saito, T.4    Kobayashi, M.5    Hirohashi, S.6
  • 24
    • 77952368550 scopus 로고    scopus 로고
    • Mammalian microRNAs: Experimental evaluation of novel and previously annotated genes
    • Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, et al. Mammalian microRNAs: experimental evaluation of novel and previously annotated genes. Genes Dev 2010;24:992-1009.
    • (2010) Genes Dev , vol.24 , pp. 992-1009
    • Chiang, H.R.1    Schoenfeld, L.W.2    Ruby, J.G.3    Auyeung, V.C.4    Spies, N.5    Baek, D.6
  • 25
    • 66249117657 scopus 로고    scopus 로고
    • Lowly expressed human microRNA genes evolve rapidly
    • Liang H, Li WH. Lowly expressed human microRNA genes evolve rapidly. Mol Biol Evol 2009;26:1195-8.
    • (2009) Mol Biol Evol , vol.26 , pp. 1195-1198
    • Liang, H.1    Li, W.H.2
  • 26
    • 77956249298 scopus 로고    scopus 로고
    • microRNA-122 as a regulator of mitochondrial metabolic gene network in hepatocellular carcinoma
    • Burchard J, Zhang C, Liu AM, Poon RT, Lee NP, Wong KF, et al. microRNA-122 as a regulator of mitochondrial metabolic gene network in hepatocellular carcinoma. Mol Syst Biol 2010;6:402.
    • (2010) Mol Syst Biol , vol.6 , pp. 402
    • Burchard, J.1    Zhang, C.2    Liu, A.M.3    Poon, R.T.4    Lee, N.P.5    Wong, K.F.6
  • 27
    • 68049103917 scopus 로고    scopus 로고
    • Activation and signaling by the AMP-activated protein kinase in endothelial cells
    • Fisslthaler B, Fleming I. Activation and signaling by the AMP-activated protein kinase in endothelial cells. Circ Res 2009;105:114-27.
    • (2009) Circ Res , vol.105 , pp. 114-127
    • Fisslthaler, B.1    Fleming, I.2
  • 28
    • 77956105754 scopus 로고    scopus 로고
    • AMPK regulates metabolic actions of glucocorticoids by phosphorylating the glucocorticoid receptor through p38 MAPK
    • Nader N, Ng SS, Lambrou GI, Pervanidou P, Wang Y, Chrousos GP, et al. AMPK regulates metabolic actions of glucocorticoids by phosphorylating the glucocorticoid receptor through p38 MAPK. Mol Endocrinol 2010;24:1748-64.
    • (2010) Mol Endocrinol , vol.24 , pp. 1748-1764
    • Nader, N.1    Ng, S.S.2    Lambrou, G.I.3    Pervanidou, P.4    Wang, Y.5    Chrousos, G.P.6
  • 29
    • 11844278458 scopus 로고    scopus 로고
    • Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
    • DOI 10.1016/j.cell.2004.12.035, PII S0092867404012607
    • Lewis BP, Burge CB, Bartel DP. Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are micro-RNA targets. Cell 2005;120:15-20. (Pubitemid 40094598)
    • (2005) Cell , vol.120 , Issue.1 , pp. 15-20
    • Lewis, B.P.1    Burge, C.B.2    Bartel, D.P.3
  • 30
    • 42949152052 scopus 로고    scopus 로고
    • Activation of AMP-activated protein kinase induces p53-dependent apoptotic cell death in response to energetic stress
    • Okoshi R, Ozaki T, Yamamoto H, Ando K, Koida N, Ono S, et al. Activation of AMP-activated protein kinase induces p53-dependent apoptotic cell death in response to energetic stress. J Biol Chem 2008;283:3979-87.
    • (2008) J Biol Chem , vol.283 , pp. 3979-3987
    • Okoshi, R.1    Ozaki, T.2    Yamamoto, H.3    Ando, K.4    Koida, N.5    Ono, S.6
  • 32
    • 77954310492 scopus 로고    scopus 로고
    • The regulation of energy metabolism and the IGF-1/ mTOR pathways by the p53 protein
    • Feng Z, Levine AJ. The regulation of energy metabolism and the IGF-1/ mTOR pathways by the p53 protein. Trends Cell Biol 2010;20:427-34.
    • (2010) Trends Cell Biol , vol.20 , pp. 427-434
    • Feng, Z.1    Levine, A.J.2
  • 33
    • 34347220473 scopus 로고    scopus 로고
    • Defining the Role of mTOR in Cancer
    • DOI 10.1016/j.ccr.2007.05.008, PII S1535610807001511
    • Guertin DA, Sabatini DM. Defining the role of mTOR in cancer. Cancer Cell 2007;12:9-22. (Pubitemid 47001784)
    • (2007) Cancer Cell , vol.12 , Issue.1 , pp. 9-22
    • Guertin, D.A.1    Sabatini, D.M.2
  • 35
    • 77956821651 scopus 로고    scopus 로고
    • Metformin action on AMP-activated protein kinase: A translational research approach to understanding a potential new therapeutic target
    • Boyle JG, Salt IP, McKay GA. Metformin action on AMP-activated protein kinase: a translational research approach to understanding a potential new therapeutic target. Diabet Med 2010;27:1097-106.
    • (2010) Diabet Med , vol.27 , pp. 1097-1106
    • Boyle, J.G.1    Salt, I.P.2    McKay, G.A.3
  • 36
    • 67749111502 scopus 로고    scopus 로고
    • The LKB1-AMPK pathway: Metabolism and growth control in tumour suppression
    • Shackelford DB, Shaw RJ. The LKB1-AMPK pathway: metabolism and growth control in tumour suppression. Nat Rev Cancer 2009; 9:563-75.
    • (2009) Nat Rev Cancer , vol.9 , pp. 563-575
    • Shackelford, D.B.1    Shaw, R.J.2
  • 37
    • 69549112743 scopus 로고    scopus 로고
    • Digital transcriptome profiling using selective hexamer priming for cDNA synthesis
    • Armour CD, Castle JC, Chen R, Babak T, Loerch P, Jackson S, et al. Digital transcriptome profiling using selective hexamer priming for cDNA synthesis. Nat Methods 2009;6:647-9.
    • (2009) Nat Methods , vol.6 , pp. 647-649
    • Armour, C.D.1    Castle, J.C.2    Chen, R.3    Babak, T.4    Loerch, P.5    Jackson, S.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.