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Volumn 13, Issue 2, 2013, Pages 210-217

Genome-assisted development of nuclear intergenic sequence markers for entomopathogenic fungi of the Metarhizium anisopliae species complex

Author keywords

Comparative genomics; Marker design; Multilocus; Nuclear intergenic; Species delimitation

Indexed keywords

FUNGAL DNA; FUNGAL PROTEIN; SPACER DNA;

EID: 84873999484     PISSN: 1755098X     EISSN: 17550998     Source Type: Journal    
DOI: 10.1111/1755-0998.12058     Document Type: Article
Times cited : (58)

References (41)
  • 2
    • 84862599581 scopus 로고    scopus 로고
    • Endophytic insect-parasitic fungi translocate nitrogen directly from insects to plants
    • Behie SW, Zelisko PM, Bidochka MJ (2012) Endophytic insect-parasitic fungi translocate nitrogen directly from insects to plants. Science, 336, 1576-1577.
    • (2012) Science , vol.336 , pp. 1576-1577
    • Behie, S.W.1    Zelisko, P.M.2    Bidochka, M.J.3
  • 3
    • 0032464580 scopus 로고    scopus 로고
    • Occurrence of the entomopathogenic fungi Metarhizium anisopliae and Beauveria bassiana in soils from temperate and near-northern habitats
    • Bidochka MJ, Kasperski JE, Wild GA (1998) Occurrence of the entomopathogenic fungi Metarhizium anisopliae and Beauveria bassiana in soils from temperate and near-northern habitats. Canadian Journal of Botany, 76, 1198-1204.
    • (1998) Canadian Journal of Botany , vol.76 , pp. 1198-1204
    • Bidochka, M.J.1    Kasperski, J.E.2    Wild, G.A.3
  • 4
    • 33846217862 scopus 로고    scopus 로고
    • Metarhizium frigidum sp. nov.: a cryptic species of M. anisopliae and a member of the M. flavoviride complex
    • Bischoff JF, Rehner SA, Humber RA (2006) Metarhizium frigidum sp. nov.: a cryptic species of M. anisopliae and a member of the M. flavoviride complex. Mycologia, 98, 737-745.
    • (2006) Mycologia , vol.98 , pp. 737-745
    • Bischoff, J.F.1    Rehner, S.A.2    Humber, R.A.3
  • 5
    • 67650912498 scopus 로고    scopus 로고
    • A multilocus phylogeny of the Metarhizium anisopliae lineage
    • Bischoff JF, Rehner SA, Humber RA (2009) A multilocus phylogeny of the Metarhizium anisopliae lineage. Mycologia, 101, 512-530.
    • (2009) Mycologia , vol.101 , pp. 512-530
    • Bischoff, J.F.1    Rehner, S.A.2    Humber, R.A.3
  • 6
    • 3543051830 scopus 로고    scopus 로고
    • Mauve: multiple alignment of conserved genomic sequence with rearrangements
    • Darling ACE, Mau B, Blattner FR, Perna NT (2004) Mauve: multiple alignment of conserved genomic sequence with rearrangements. Genome Research, 14, 1394-1403.
    • (2004) Genome Research , vol.14 , pp. 1394-1403
    • Darling, A.C.E.1    Mau, B.2    Blattner, F.R.3    Perna, N.T.4
  • 7
    • 0344863884 scopus 로고    scopus 로고
    • A multilocus genealogical approach to phylogenetic species recognition in the model eukaryote Neurospora
    • Dettman JR, Jacobson DJ, Taylor JW (2003) A multilocus genealogical approach to phylogenetic species recognition in the model eukaryote Neurospora. Evolution, 57, 2703-2720.
    • (2003) Evolution , vol.57 , pp. 2703-2720
    • Dettman, J.R.1    Jacobson, D.J.2    Taylor, J.W.3
  • 8
    • 0033939483 scopus 로고    scopus 로고
    • A taxonomic revision of Metarhizium based on a phylogenetic analysis of rDNA sequence data
    • Driver F, Milner RJ, Trueman JWH (2000) A taxonomic revision of Metarhizium based on a phylogenetic analysis of rDNA sequence data. Mycological Research, 104, 134-150.
    • (2000) Mycological Research , vol.104 , pp. 134-150
    • Driver, F.1    Milner, R.J.2    Trueman, J.W.H.3
  • 9
    • 38649110663 scopus 로고    scopus 로고
    • BEAST: bayesian evolutionary analysis by sampling trees
    • Drummond A, Rambaut A (2007) BEAST: bayesian evolutionary analysis by sampling trees. BMC Evolutionary Biology, 7, 214.
    • (2007) BMC Evolutionary Biology , vol.7 , pp. 214
    • Drummond, A.1    Rambaut, A.2
  • 10
    • 79952057173 scopus 로고    scopus 로고
    • Development of transgenic fungi that kill human malaria parasites in mosquitoes
    • Fang W, Vega-Rodríguez J, Ghosh AK et al. (2011) Development of transgenic fungi that kill human malaria parasites in mosquitoes. Science, 331, 1074-1077.
    • (2011) Science , vol.331 , pp. 1074-1077
    • Fang, W.1    Vega-Rodríguez, J.2    Ghosh, A.K.3
  • 11
    • 84873990826 scopus 로고    scopus 로고
    • FAO, Red Locust disaster in Eastern Africa prevented: biopesticides being used on a large scale. Available from
    • FAO (2009) Red Locust disaster in Eastern Africa prevented: biopesticides being used on a large scale. Available from http://www.fao.org/news/story/en/item/21084/icode/.
    • (2009)
  • 12
    • 33845452848 scopus 로고    scopus 로고
    • A fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis
    • Fitzpatrick DA, Logue ME, Stajich JE, Butler G (2006) A fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis. BMC Evolutionary Biology, 6, 99.
    • (2006) BMC Evolutionary Biology , vol.6 , pp. 99
    • Fitzpatrick, D.A.1    Logue, M.E.2    Stajich, J.E.3    Butler, G.4
  • 13
    • 84862977387 scopus 로고    scopus 로고
    • The Paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes
    • Floudas D, Binder M, Riley R et al. (2012) The Paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes. Science, 336, 1715-1719.
    • (2012) Science , vol.336 , pp. 1715-1719
    • Floudas, D.1    Binder, M.2    Riley, R.3
  • 14
    • 79851472311 scopus 로고    scopus 로고
    • Genome sequencing and comparative transcriptomics of the model entomopathogenic fungi Metarhizium anisopliae and M. acridum
    • Gao Q, Kai Jin, Ying S-H et al. (2011) Genome sequencing and comparative transcriptomics of the model entomopathogenic fungi Metarhizium anisopliae and M. acridum. PLoS Genetics, 7, e1001264.
    • (2011) PLoS Genetics , vol.7
    • Gao, Q.1    Kai, J.2    Ying, S.-H.3
  • 15
    • 77955379521 scopus 로고    scopus 로고
    • Credibility of an IPM approach for locust and grasshopper control: the australian example
    • Hunter DM (2010) Credibility of an IPM approach for locust and grasshopper control: the australian example. Journal of Orthoptera Research, 19, 133-137.
    • (2010) Journal of Orthoptera Research , vol.19 , pp. 133-137
    • Hunter, D.M.1
  • 16
    • 0037100671 scopus 로고    scopus 로고
    • MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
    • Katoh K, Misawa K, Kuma K, Miyata T (2002) MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Research, 30, 3059-3066.
    • (2002) Nucleic Acids Research , vol.30 , pp. 3059-3066
    • Katoh, K.1    Misawa, K.2    Kuma, K.3    Miyata, T.4
  • 17
    • 84863116260 scopus 로고    scopus 로고
    • New teleomorph combinations in the entomopathogenic genus Metacordyceps
    • Kepler RM, Sung G-H, Ban S et al. (2012) New teleomorph combinations in the entomopathogenic genus Metacordyceps. Mycologia, 104, 182-197.
    • (2012) Mycologia , vol.104 , pp. 182-197
    • Kepler, R.M.1    Sung, G.-H.2    Ban, S.3
  • 18
    • 78149256307 scopus 로고    scopus 로고
    • BUCKy: gene tree/species tree reconciliation with Bayesian concordance analysis
    • Larget BR, Kotha SK, Dewey CN, Ané C (2010) BUCKy: gene tree/species tree reconciliation with Bayesian concordance analysis. Bioinformatics, 26, 2910-2911.
    • (2010) Bioinformatics , vol.26 , pp. 2910-2911
    • Larget, B.R.1    Kotha, S.K.2    Dewey, C.N.3    Ané, C.4
  • 20
    • 79957648061 scopus 로고    scopus 로고
    • PhyDesign: an online application for profiling phylogenetic informativeness
    • López-Giráldez F, Townsend JP (2011) PhyDesign: an online application for profiling phylogenetic informativeness. BMC Evolutionary Biology, 11, 152.
    • (2011) BMC Evolutionary Biology , vol.11 , pp. 152
    • López-Giráldez, F.1    Townsend, J.P.2
  • 22
  • 23
    • 33747624404 scopus 로고    scopus 로고
    • Phylogenetic origins of African and neotropical Beauveria bassiana s.l. pathogens of the coffee berry borer, Hypothenemus hampei
    • Rehner SA, Posada F, Buckley EP et al. (2006) Phylogenetic origins of African and neotropical Beauveria bassiana s.l. pathogens of the coffee berry borer, Hypothenemus hampei. Journal of Invertebrate Pathology, 93, 11-21.
    • (2006) Journal of Invertebrate Pathology , vol.93 , pp. 11-21
    • Rehner, S.A.1    Posada, F.2    Buckley, E.P.3
  • 26
    • 0242365676 scopus 로고    scopus 로고
    • Genome-scale approaches to resolving incongruence in molecular phylogenies
    • Rokas A, Williams BL, King N, Carroll SB (2003) Genome-scale approaches to resolving incongruence in molecular phylogenies. Nature, 425, 798-804.
    • (2003) Nature , vol.425 , pp. 798-804
    • Rokas, A.1    Williams, B.L.2    King, N.3    Carroll, S.B.4
  • 27
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • Ronquist F, Huelsenbeck JP (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics, 19, 1572-1574.
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 28
    • 0033990048 scopus 로고    scopus 로고
    • Primer3 on the WWW for General Users and for Biologist Programmers
    • (eds Misener S & Krawetz SA) - Humana Press, New Jersey.
    • Rozen S, Skaletsky H (2000) Primer3 on the WWW for General Users and for Biologist Programmers. In: Bioinformatics Methods and Protocols: Methods in Molecular Biology (eds Misener S & Krawetz SA), pp. 365-386. Humana Press, New Jersey.
    • (2000) Bioinformatics Methods and Protocols: Methods in Molecular Biology , pp. 365-386
    • Rozen, S.1    Skaletsky, H.2
  • 29
    • 0037314098 scopus 로고    scopus 로고
    • r8s: inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock
    • Sanderson MJ (2003) r8s: inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock. Bioinformatics, 19, 301-302.
    • (2003) Bioinformatics , vol.19 , pp. 301-302
    • Sanderson, M.J.1
  • 30
    • 84858427203 scopus 로고    scopus 로고
    • The insect-pathogenic fungus Metarhizium robertsii (Clavicipitaceae) is also an endophyte that stimulates plant root development
    • Sasan RK, Bidochka MJ (2012) The insect-pathogenic fungus Metarhizium robertsii (Clavicipitaceae) is also an endophyte that stimulates plant root development. American Journal of Botany, 99, 101-107.
    • (2012) American Journal of Botany , vol.99 , pp. 101-107
    • Sasan, R.K.1    Bidochka, M.J.2
  • 31
    • 75149170450 scopus 로고    scopus 로고
    • New primers for promising single-copy genes in fungal phylogenetics and systematics
    • Schmitt I, Crespo A, Divakar PK et al. (2009) New primers for promising single-copy genes in fungal phylogenetics and systematics. Persoonia, 23, 35-40.
    • (2009) Persoonia , vol.23 , pp. 35-40
    • Schmitt, I.1    Crespo, A.2    Divakar, P.K.3
  • 32
    • 84859972408 scopus 로고    scopus 로고
    • Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi
    • Schoch CL, Seifert KA, Huhndorf S et al. (2012) Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi. Proceedings of the National Academy of Sciences, 109, 6241-6246.
    • (2012) Proceedings of the National Academy of Sciences , vol.109 , pp. 6241-6246
    • Schoch, C.L.1    Seifert, K.A.2    Huhndorf, S.3
  • 33
    • 20444385833 scopus 로고    scopus 로고
    • An entomopathogenic fungus for control of adult African malaria mosquitoes
    • Scholte E-J, Ng'habi K, Kihonda J et al. (2005) An entomopathogenic fungus for control of adult African malaria mosquitoes. Science, 308, 1641-1642.
    • (2005) Science , vol.308 , pp. 1641-1642
    • Scholte, E.-J.1    Ng'habi, K.2    Kihonda, J.3
  • 34
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    • Stamatakis A (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics, 22, 2688-2690.
    • (2006) Bioinformatics , vol.22 , pp. 2688-2690
    • Stamatakis, A.1
  • 35
    • 34347350016 scopus 로고    scopus 로고
    • Phylogenetic classification of Cordyceps and the clavicipitaceous fungi
    • Sung G-H, Hywel-Jones NL, Sung J-M et al. (2007) Phylogenetic classification of Cordyceps and the clavicipitaceous fungi. Studies in Mycology, 57, 5-59.
    • (2007) Studies in Mycology , vol.57 , pp. 5-59
    • Sung, G.-H.1    Hywel-Jones, N.L.2    Sung, J.-M.3
  • 36
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura K, Peterson D, Peterson N et al. (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Molecular Biology and Evolution, 28, 2731-2739.
    • (2011) Molecular Biology and Evolution , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3
  • 37
    • 34447279942 scopus 로고    scopus 로고
    • Profiling phylogenetic informativeness
    • Townsend JP (2007) Profiling phylogenetic informativeness. Systematic Biology, 56, 222-231.
    • (2007) Systematic Biology , vol.56 , pp. 222-231
    • Townsend, J.P.1
  • 38
    • 0000432452 scopus 로고
    • Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics
    • (eds Innis MA, Gelfand DH, Sninsky JJ & White TJ) - Academic Press, San Diego.
    • White TJ, Bruns TD, Lee S, Taylor J (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: PCR protocols, a guide to methods and applications (eds Innis MA, Gelfand DH, Sninsky JJ & White TJ), pp. 315-322. Academic Press, San Diego.
    • (1990) PCR protocols, a guide to methods and applications , pp. 315-322
    • White, T.J.1    Bruns, T.D.2    Lee, S.3    Taylor, J.4
  • 39
    • 35548970780 scopus 로고    scopus 로고
    • Mycoinsecticides and Mycoacaricides: a comprehensive list with worldwide coverage and international classification of formulation types
    • deFaria MR, Wraight SP (2007) Mycoinsecticides and Mycoacaricides: a comprehensive list with worldwide coverage and international classification of formulation types. Biological Control, 43, 237-256.
    • (2007) Biological Control , vol.43 , pp. 237-256
    • de Faria, M.R.1    Wraight, S.P.2
  • 40
    • 0034848170 scopus 로고    scopus 로고
    • DAMBE: Software package for data analysis in molecular biology and evolution
    • Xia X, Xie Z (2001) DAMBE: Software package for data analysis in molecular biology and evolution. Journal of Heredity, 92, 371-373.
    • (2001) Journal of Heredity , vol.92 , pp. 371-373
    • Xia, X.1    Xie, Z.2
  • 41
    • 35648973801 scopus 로고    scopus 로고
    • Review on safety of the entomopathogenic fungus Metarhizium anisopliae
    • Zimmermann G (2007) Review on safety of the entomopathogenic fungus Metarhizium anisopliae. Biocontrol Science and Technology, 17, 879-920.
    • (2007) Biocontrol Science and Technology , vol.17 , pp. 879-920
    • Zimmermann, G.1


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