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Volumn 161, Issue 3, 2013, Pages 181-188

Genome-wide comparison of two RNA-stabilizing reagents for transcriptional profiling of peripheral blood

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL MARKER; GLOBIN; MESSENGER RNA;

EID: 84873899437     PISSN: 19315244     EISSN: 18781810     Source Type: Journal    
DOI: 10.1016/j.trsl.2012.10.003     Document Type: Article
Times cited : (26)

References (36)
  • 1
    • 18644367266 scopus 로고    scopus 로고
    • Stabilization of mRNA expression in whole blood samples
    • L. Rainen, U. Oelmueller, and S. Jurgensen Stabilization of mRNA expression in whole blood samples Clin Chem 48 2002 1883 1890
    • (2002) Clin Chem , vol.48 , pp. 1883-1890
    • Rainen, L.1    Oelmueller, U.2    Jurgensen, S.3
  • 2
    • 13844289394 scopus 로고    scopus 로고
    • Recreational music-making modulates the human stress response: A preliminary individualized gene expression strategy
    • B. Bittman, L. Berk, and M. Shannon Recreational music-making modulates the human stress response: a preliminary individualized gene expression strategy Med Sci Monit 11 2005 BR31 BR40
    • (2005) Med Sci Monit , vol.11
    • Bittman, B.1    Berk, L.2    Shannon, M.3
  • 3
    • 4344680233 scopus 로고    scopus 로고
    • Expression levels for many genes in human peripheral blood cells are highly sensitive to ex vivo incubation
    • E.C. Baechler, F.M. Batliwalla, and G. Karypis Expression levels for many genes in human peripheral blood cells are highly sensitive to ex vivo incubation Genes Immun 5 2004 347 353
    • (2004) Genes Immun , vol.5 , pp. 347-353
    • Baechler, E.C.1    Batliwalla, F.M.2    Karypis, G.3
  • 4
    • 2942534609 scopus 로고    scopus 로고
    • Getting the right cells to the array: Gene expression microarray analysis of cell mixtures and sorted cells
    • P. Szaniszlo, N. Wang, and M. Sinha Getting the right cells to the array: gene expression microarray analysis of cell mixtures and sorted cells Cytometry A 59 2004 191 202
    • (2004) Cytometry A , vol.59 , pp. 191-202
    • Szaniszlo, P.1    Wang, N.2    Sinha, M.3
  • 5
    • 77954384233 scopus 로고    scopus 로고
    • Assessing the human immune system through blood transcriptomics
    • D. Chaussabel, V. Pascual, and J. Banchereau Assessing the human immune system through blood transcriptomics BMC Biol 8 2010 84
    • (2010) BMC Biol , vol.8 , pp. 84
    • Chaussabel, D.1    Pascual, V.2    Banchereau, J.3
  • 6
    • 80054069265 scopus 로고    scopus 로고
    • RNA-stabilized whole blood samples but not peripheral blood mononuclear cells can be stored for prolonged time periods prior to transcriptome analysis
    • S. Debey-Pascher, A. Hofmann, and F. Kreusch RNA-stabilized whole blood samples but not peripheral blood mononuclear cells can be stored for prolonged time periods prior to transcriptome analysis J Mol Diagn 13 2011 452 460
    • (2011) J Mol Diagn , vol.13 , pp. 452-460
    • Debey-Pascher, S.1    Hofmann, A.2    Kreusch, F.3
  • 8
    • 9444293382 scopus 로고    scopus 로고
    • Effects of mRNA amplification on gene expression ratios in cDNA experiments estimated by analysis of variance
    • V. Nygaard, A. Loland, and M. Holden Effects of mRNA amplification on gene expression ratios in cDNA experiments estimated by analysis of variance BMC Genomics 4 2003 11
    • (2003) BMC Genomics , vol.4 , pp. 11
    • Nygaard, V.1    Loland, A.2    Holden, M.3
  • 9
    • 0036281003 scopus 로고    scopus 로고
    • RNA amplification results in reproducible microarray data with slight ratio bias
    • 6, 8, 40
    • L.G. Puskas, A. Zvara, L. Hackler Jr., and P. Van Hummelen RNA amplification results in reproducible microarray data with slight ratio bias BioTechniques 32 2002 1330 1334 6, 8, 40
    • (2002) BioTechniques , vol.32 , pp. 1330-1334
    • Puskas, L.G.1    Zvara, A.2    Hackler, Jr.L.3    Van Hummelen, P.4
  • 11
    • 0035293021 scopus 로고    scopus 로고
    • Quantitative analysis of mRNA amplification by in vitro transcription
    • L.R. Baugh, A.A. Hill, E.L. Brown, and C.P. Hunter Quantitative analysis of mRNA amplification by in vitro transcription Nucleic Acids Res 29 2001 E29
    • (2001) Nucleic Acids Res , vol.29 , pp. 29
    • Baugh, L.R.1    Hill, A.A.2    Brown, E.L.3    Hunter, C.P.4
  • 12
    • 1542375902 scopus 로고    scopus 로고
    • Amplification protocols introduce systematic but reproducible errors into gene expression studies
    • C.L. Wilson, S.D. Pepper, Y. Hey, and C.J. Miller Amplification protocols introduce systematic but reproducible errors into gene expression studies BioTechniques 36 2004 498 506
    • (2004) BioTechniques , vol.36 , pp. 498-506
    • Wilson, C.L.1    Pepper, S.D.2    Hey, Y.3    Miller, C.J.4
  • 13
    • 9444265265 scopus 로고    scopus 로고
    • Obtaining reliable information from minute amounts of RNA using cDNA microarrays
    • L. Hu, J. Wang, and K. Baggerly Obtaining reliable information from minute amounts of RNA using cDNA microarrays BMC Genomics 3 2002 16
    • (2002) BMC Genomics , vol.3 , pp. 16
    • Hu, L.1    Wang, J.2    Baggerly, K.3
  • 14
    • 33644850222 scopus 로고    scopus 로고
    • Options available for profiling small samples: A review of sample amplification technology when combined with microarray profiling
    • V. Nygaard, and E. Hovig Options available for profiling small samples: a review of sample amplification technology when combined with microarray profiling Nucleic Acids Res 34 2006 996 1014
    • (2006) Nucleic Acids Res , vol.34 , pp. 996-1014
    • Nygaard, V.1    Hovig, E.2
  • 15
    • 0345168051 scopus 로고    scopus 로고
    • Moderate degradation does not preclude microarray analysis of small amounts of RNA
    • 1198-201
    • O. Schoor, T. Weinschenk, and J. Hennenlotter Moderate degradation does not preclude microarray analysis of small amounts of RNA BioTechniques 35 2003 1192 1196 1198-201
    • (2003) BioTechniques , vol.35 , pp. 1192-1196
    • Schoor, O.1    Weinschenk, T.2    Hennenlotter, J.3
  • 16
    • 0344739963 scopus 로고    scopus 로고
    • Assessment of two methods for handling blood in collection tubes with RNA stabilizing agent for surveillance of gene expression profiles with high density microarrays
    • D.C. Thach, B. Lin, and E. Walter Assessment of two methods for handling blood in collection tubes with RNA stabilizing agent for surveillance of gene expression profiles with high density microarrays J Immunol Methods 283 2003 269 279
    • (2003) J Immunol Methods , vol.283 , pp. 269-279
    • Thach, D.C.1    Lin, B.2    Walter, E.3
  • 17
    • 4344612631 scopus 로고    scopus 로고
    • Optimizing RNA extraction yield from whole blood for microarray gene expression analysis
    • J. Wang, J.F. Robinson, and H.M. Khan Optimizing RNA extraction yield from whole blood for microarray gene expression analysis Clin Biochem 37 2004 741 744
    • (2004) Clin Biochem , vol.37 , pp. 741-744
    • Wang, J.1    Robinson, J.F.2    Khan, H.M.3
  • 18
    • 19944406420 scopus 로고    scopus 로고
    • Whole blood and leukocyte RNA isolation for gene expression analyses
    • R.J. Feezor, H.V. Baker, and M. Mindrinos Whole blood and leukocyte RNA isolation for gene expression analyses Physiol Genomics 19 2004 247 254
    • (2004) Physiol Genomics , vol.19 , pp. 247-254
    • Feezor, R.J.1    Baker, H.V.2    Mindrinos, M.3
  • 19
    • 26844441016 scopus 로고    scopus 로고
    • Optimized blood cell profiling method for genomic biomarker discovery using high-density microarray
    • J. Shou, C. Dotson, and H.R. Qian Optimized blood cell profiling method for genomic biomarker discovery using high-density microarray Biomarkers 10 2005 310 320
    • (2005) Biomarkers , vol.10 , pp. 310-320
    • Shou, J.1    Dotson, C.2    Qian, H.R.3
  • 20
    • 65449163005 scopus 로고    scopus 로고
    • A practical platform for blood biomarker study by using global gene expression profiling of peripheral whole blood
    • Z. Tian, N. Palmer, and P. Schmid A practical platform for blood biomarker study by using global gene expression profiling of peripheral whole blood PLoS One 4 2009 e5157
    • (2009) PLoS One , vol.4 , pp. 5157
    • Tian, Z.1    Palmer, N.2    Schmid, P.3
  • 21
    • 54949146491 scopus 로고    scopus 로고
    • Differential gene expression profiles are dependent upon method of peripheral blood collection and RNA isolation
    • A.L. Asare, S.A. Kolchinsky, and Z. Gao Differential gene expression profiles are dependent upon method of peripheral blood collection and RNA isolation BMC Genomics 9 2008 474
    • (2008) BMC Genomics , vol.9 , pp. 474
    • Asare, A.L.1    Kolchinsky, S.A.2    Gao, Z.3
  • 22
    • 33644865911 scopus 로고    scopus 로고
    • Assessment of a new RNA stabilizing reagent (Tempus Blood RNA) for minimal residual disease in onco-hematology using the EAC protocol
    • N. Prezeau, M. Silvy, J. Gabert, and C. Picard Assessment of a new RNA stabilizing reagent (Tempus Blood RNA) for minimal residual disease in onco-hematology using the EAC protocol Leuk Res 30 2006 569 574
    • (2006) Leuk Res , vol.30 , pp. 569-574
    • Prezeau, N.1    Silvy, M.2    Gabert, J.3    Picard, C.4
  • 23
    • 54849383100 scopus 로고    scopus 로고
    • Assessment of sample collection and storage methods for multicenter immunologic research in children
    • L.A. Matheson, T.T. Duong, A.M. Rosenberg, and R.S. Yeung Assessment of sample collection and storage methods for multicenter immunologic research in children J Immunol Methods 339 2008 82 89
    • (2008) J Immunol Methods , vol.339 , pp. 82-89
    • Matheson, L.A.1    Duong, T.T.2    Rosenberg, A.M.3    Yeung, R.S.4
  • 24
    • 34347352225 scopus 로고    scopus 로고
    • Postpartum-activation of multiple sclerosis is associated with down-regulation of tolerogenic HLA-G
    • L. Airas, T. Nikula, Y.H. Huang, R. Lahesmaa, and H. Wiendl Postpartum-activation of multiple sclerosis is associated with down-regulation of tolerogenic HLA-G J Neuroimmunol 187 2007 205 211
    • (2007) J Neuroimmunol , vol.187 , pp. 205-211
    • Airas, L.1    Nikula, T.2    Huang, Y.H.3    Lahesmaa, R.4    Wiendl, H.5
  • 25
    • 0036081355 scopus 로고    scopus 로고
    • Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
    • R. Edgar, M. Domrachev, and A.E. Lash Gene Expression Omnibus: NCBI gene expression and hybridization array data repository Nucleic Acids Res 30 2002 207 210
    • (2002) Nucleic Acids Res , vol.30 , pp. 207-210
    • Edgar, R.1    Domrachev, M.2    Lash, A.E.3
  • 26
    • 0035942271 scopus 로고    scopus 로고
    • Significance analysis of microarrays applied to the ionizing radiation response
    • V.G. Tusher, R. Tibshirani, and G. Chu Significance analysis of microarrays applied to the ionizing radiation response Proc Natl Acad Sci U S A 98 2001 5116 5121
    • (2001) Proc Natl Acad Sci U S A , vol.98 , pp. 5116-5121
    • Tusher, V.G.1    Tibshirani, R.2    Chu, G.3
  • 27
    • 27344435774 scopus 로고    scopus 로고
    • Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
    • A. Subramanian, P. Tamayo, and V.K. Mootha Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles Proc Natl Acad Sci U S A 102 2005 15545 15550
    • (2005) Proc Natl Acad Sci U S A , vol.102 , pp. 15545-15550
    • Subramanian, A.1    Tamayo, P.2    Mootha, V.K.3
  • 28
    • 61649109505 scopus 로고    scopus 로고
    • Gene expression profiling of whole blood: Comparison of target preparation methods for accurate and reproducible microarray analysis
    • K. Vartanian, R. Slottke, and T. Johnstone Gene expression profiling of whole blood: comparison of target preparation methods for accurate and reproducible microarray analysis BMC Genomics 10 2009 2
    • (2009) BMC Genomics , vol.10 , pp. 2
    • Vartanian, K.1    Slottke, R.2    Johnstone, T.3
  • 29
    • 38749116228 scopus 로고    scopus 로고
    • Interference of globin genes with biomarker discovery for allograft rejection in peripheral blood samples
    • L. Li, L. Ying, and M. Naesens Interference of globin genes with biomarker discovery for allograft rejection in peripheral blood samples Physiol Genomics 32 2008 190 197
    • (2008) Physiol Genomics , vol.32 , pp. 190-197
    • Li, L.1    Ying, L.2    Naesens, M.3
  • 30
    • 33751186521 scopus 로고    scopus 로고
    • Effects of globin mRNA reduction methods on gene expression profiles from whole blood
    • J. Liu, E. Walter, D. Stenger, and D. Thach Effects of globin mRNA reduction methods on gene expression profiles from whole blood J Mol Diagn 8 2006 551 558
    • (2006) J Mol Diagn , vol.8 , pp. 551-558
    • Liu, J.1    Walter, E.2    Stenger, D.3    Thach, D.4
  • 31
    • 39749133586 scopus 로고    scopus 로고
    • Characterization of globin RNA interference in gene expression profiling of whole-blood samples
    • C. Wright, D. Bergstrom, and H. Dai Characterization of globin RNA interference in gene expression profiling of whole-blood samples Clin Chem 54 2008 396 405
    • (2008) Clin Chem , vol.54 , pp. 396-405
    • Wright, C.1    Bergstrom, D.2    Dai, H.3
  • 33
    • 34648835408 scopus 로고    scopus 로고
    • Impaired expression of peripheral blood apoptotic-related gene transcripts in acute multiple sclerosis relapse
    • A. Achiron, A. Feldman, M. Mandel, and M. Gurevich Impaired expression of peripheral blood apoptotic-related gene transcripts in acute multiple sclerosis relapse Ann N Y Acad Sci 1107 2007 155 167
    • (2007) Ann N y Acad Sci , vol.1107 , pp. 155-167
    • Achiron, A.1    Feldman, A.2    Mandel, M.3    Gurevich, M.4
  • 34
    • 34249891600 scopus 로고    scopus 로고
    • Gene expression changes in peripheral blood mononuclear cells from multiple sclerosis patients undergoing beta-interferon therapy
    • M.K. Singh, T.F. Scott, W.A. LaFramboise, F.Z. Hu, J.C. Post, and G.D. Ehrlich Gene expression changes in peripheral blood mononuclear cells from multiple sclerosis patients undergoing beta-interferon therapy J Neurol Sci 258 2007 52 59
    • (2007) J Neurol Sci , vol.258 , pp. 52-59
    • Singh, M.K.1    Scott, T.F.2    Laframboise, W.A.3    Hu, F.Z.4    Post, J.C.5    Ehrlich, G.D.6
  • 36
    • 77953286299 scopus 로고    scopus 로고
    • Early suppression of immune response pathways characterizes children with prediabetes in genome-wide gene expression profiling
    • L.L. Elo, J. Mykkanen, and T. Nikula Early suppression of immune response pathways characterizes children with prediabetes in genome-wide gene expression profiling J Autoimmun 35 2010 70 76
    • (2010) J Autoimmun , vol.35 , pp. 70-76
    • Elo, L.L.1    Mykkanen, J.2    Nikula, T.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.