Culturable actinomycetes from desert ecosystem in northeast of Qinghai-Tibet Plateau

Annals of Microbiology

Volumn 63, Issue 1, 2013, Pages 259-266

  Ding, Dong ^a   Chen, Guichen ^a   Wang, Bochan ^b   Wang, Qilan ^a   Liu, Demei ^a   Peng, Min ^a   Shi, Ping ^b  

^a NORTHWEST INSTITUTE OF PLATEAU BIOLOGY   (China)

^b EAST CHINA UNIVERSITY OF SCIENCE AND TECHNOLOGY   (China)

Author keywords

16S rRNA RFLP; Actinomycete; Desert ecosystem; NRPS; PKS; Qinghai Tibet Plateau

Indexed keywords

ACTINOBACTERIA; ACTINOBACTERIA (CLASS); CELLULOMONAS; MICROMONOSPORA; SACCHAROTHRIX; STREPTOMYCES; STREPTOSPORANGIUM;

EID: 84873720624     PISSN: 15904261     EISSN: 18692044     Source Type: Journal    
DOI: 10.1007/s13213-012-0469-9     Document Type: Article

References (31)

1. Alford JA, Steinle EE (1967) A double layered plate method for the detection of microbial lipolysis. J Appl Microbiol 53:1907-1915
2. Ayuso-Sacido A, Genilloud O (2005) New PCR primers for the screening of NRPS and PKS-I systems in actinomycetes: detection and distribution of these biosynthetic gene sequences in major taxonomic groups. Microb Ecol 49:10-24
3. Baltz RH (2006) Marcel faber roundtable: is our antibiotic pipeline unproductive because of starvation, constipation or lack of inspiration. J Ind Microbiol Biotechnol 33:507-513
4. Bredholdt H, Galatenko OA, Engelhardt K, Fjærvik E, Terekhova LP, Zotchev SB (2007) Rare actinomycete bacteria from the shallow water sediments of the Trondheim fjord, Norway: isolation, diversity and biological activity. Environ Microbiol 9(11):2756-2764
5. Chen J, Chen HM, Zhang YQ, Wei YZ, Li QP, Liu HY, Su J, Zhang YQ, Yu LY (2011) Agromyces flavus sp. nov., an actinomycete isolated from soil. Int J Syst Evol Microbiol 61(7):1705-1709
6. Cook AE, Meyers PR (2003) Rapid identification of filamentous actinomycetes to the genus level using genus-specific 16SrRNA gene restriction fragment patterns. Int J Syst Evol Microbiol 53:1907-1915
7. Drenovsky RE, Vo D, Graham KJ, Scow KM (2004) Soil water content and organic carbon availability are major determinants of soil microbial community composition. Microb Ecol 48:424-430
8. Edwin JDB, Marion BS (1945) The paper-disc agar-plate method for the assay of antibiotic substances. J Bacteriol 50(4):459-467
9. Fan LX, Zheng JP, Yang XH (2010) The effect of natural air-dry time on actinomycetes isolation from sample soil. J Hainan Med Coll 16(3):280-284
10. Fleck WF, Stranss DG, Prauser H (1980) Naphthoquinone antibiotics from Streptomyces lateritius. I fermentation, isolation and characterization of granatomycins A, C and D. Z Allg Mikrobiol 20(9):543-551
11. Gilpin ML, Box SJ, Elson AL (1988) New quinine antibiotics of the granaticin type, isolated from Streptomyces lateritius II. structure determination. J Antibiotic XLI(4):512-518
12. Gomes RC, Semedo L, Soares RMA, Linhares LF, Ulhoa CJ, Alviano CS, Coelho RRR (2001) Purification of a thermostable endochitinase from Streptomyces RC1071 isolated from a cerrado soil and its antagonism against phytopathogenic fungi. J Appl Microbiol 90:653-661
13. Heuer H, Krsek M, Baker P, Smalla K, Wellington EMH (1997) Analysis of actinomycete communities by specific amplification of genes encoding 16S rRNA and gel-electrophoretic separation in denaturing gradients. Appl Environ Microbiol 63:3233-3241
14. Hopwood DA (1997) Genetic contributions to understanding polyketidesynthases. Chem Rev 97:2465-2498
15. Hozzein WN, Ali MIA, Rabie W (2008) A new preferential medium for enumeration and isolation of desert actinomycetes. World J Microbiol Biotechnol 24:1547-1552
16. Jing SM, Li X, Zhang L, Sun W, Dai SK, Xie LW, Liu YH, Lee KJ (2008) Culturable actinobacteria isolated from marine sponge Iotrochota sp. Mar Biol 153:945-952
17. Ketela MM, Virpi S, Halo L, Hautala A, Hakala J, Mantsala P, Ylihonko K (1999) An efficient approach for screening minimal PKS genes from Streptomyces. FEMS Microbiol Lett 180:1-6
18. Kowalchuk GA, Buma DS, de-Boer W, Kinkhamer PG, van-Veen JA (2002) Effects of above-ground plant species composition and diversity on the diversity of soil-borne microorganisms. Antonie Van Leeuwenhoek 81:509-520
19. Marschner P, Yang CH, Lieberei R, Crowley DE (2001) Soil and plant specific effects on bacterial community composition in the rhizosphere. Soil Biol Biochem 33:1437-1445
20. Okoro CK, Brown R, Jones AL, Andrews BA, Asenjo JA, Goodfellow M, Bull AT (2009) Diversity of culturable actinomycetes in hyper-arid soils of the Atacama Deserts, Chile. Antonie Van Leeuwenhoek 95:121-133
21. Reischl U, Pulz M, Ehret W, Wolf H (1994) PCR-based detection of mycobacteria in sputum samples using a simple and reliable DNA extraction protocol. Biotechniques 17(5):844-845
22. Seong CN, Choi JH, Baik KS (2001) An improved selective isolation of rare actinomycetes from forest soil. J Microbiol 39(1):17-23
23. Steingrube VA, Wilson RW, Brown BA, Jost KC, Blacklock Z, Gibson JL, Wallace RJ (1997) Rapid identification of clinically significant species and taxa of aerobic actinomycetes, including Actinomadura, Gordona, Nocardia, Rhodococcus, Streptomyces, and Tsukamurella isolates, by DNA amplification and restriction endonuclease analysis. J Clin Microbial 35(4):817-822
24. Stoyachenko IA, Varlamov VP (1994) Chitinases of Streptomyces kurssanovii: purification and some properties. Carbohyd Polym 24(1):47-54
25. Takahashi Y, Matsumoto A, Seino A, Twai Y, Omura S (1996) Rare actinomycetes isolated from desert soils. Actinomycetol 10(2):91-97
26. Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24(8):1596-1599
27. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The clustal-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876-4882
28. Tuntiwachwuttikul P, Taechowisan T, Wanbanjob A, Thadaniti S, Taylor WC (2008) Lansai A-D, secondary metabolites from Streptomyces sp. SUC1. Tetrahedron 54:7583-7586
29. Zhang YQ, Schumann P, Li WJ, Chen GZ, Tian XP, Stackebrandt E, Xu LH, Jiang CL (2005) Isoptericola halotolerans sp. nov., a novel actinobacterium isolated from saline soil from Qinghai Province, north-west China. Int J Syst Evol Microbiol 55:1867-1870
30. Zhang YQ, Schumann P, Yu LY, Liu HY, Zhang YQ, Xu LH, Stackebrandt E, Jiang CL, Li WJ (2007) Zhihengliuella halotolerans gen. nov., sp. nov., a novel member of the family Micrococcaceae. Int J Syst Evol Microbiol 57:1018-1023
31. Zhang YQ, Liu HY, Chen J, Yuan LJ, Sun W, Zhang LX, Zhang YQ, Yu LY, Li WJ (2010) Diversity of culturable actinobacteria from Qinghai-Tibet Plateau, China. Antonie Van Leeuwenhoek 98:213-223