Taking a cellular road-trip: mRNA transport and anchoring

Current Opinion in Cell Biology

Volumn 25, Issue 1, 2013, Pages 99-106

  Pratt, Catherine A ^a   Mowry, Kimberly L ^a  

^a BROWN UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

FRAGILE X MENTAL RETARDATION PROTEIN; MESSENGER RNA; POSTSYNAPTIC DENSITY PROTEIN 95;

3' UNTRANSLATED REGION; ENDOCYTOSIS; MITOSIS; NONHUMAN; PRIORITY JOURNAL; PROTEIN EXPRESSION; PROTEIN FUNCTION; PROTEIN LOCALIZATION; PROTEIN SECONDARY STRUCTURE; PROTEIN TERTIARY STRUCTURE; REVIEW; RNA STRUCTURE; RNA TRANSPORT; SEQUENCE ANALYSIS; TRANSCRIPTION REGULATION;

EID: 84873717509     PISSN: 09550674     EISSN: 18790410     Source Type: Journal    
DOI: 10.1016/j.ceb.2012.08.015     Document Type: Review

References (69)

1. Jeffery W.R., Tomlinson C.R., Brodeur R.D. Localization of actin messenger RNA during early ascidian development. Dev Biol 1983, 99:408-417.
2. Tomlinson C.R., Bates W.R., Jeffery W.R. Development of a muscle actin specified by maternal and zygotic mRNA in ascidian embryos. Dev Biol 1987, 123:470-482.
3. Berleth T., Burri M., Thoma G., Bopp D., Richstein S., Frigerio G., Noll M., Nusslein-Volhard C. The role of localization of bicoid RNA in organizing the anterior pattern of the Drosophila embryo. EMBO J 1988, 7:1749-1756.
4. Lawrence J.B., Singer R.H. Intracellular localization of messenger RNAs for cytoskeletal proteins. Cell 1986, 45:407-415.
5. Kang H., Schuman E.M. A requirement for local protein synthesis in neurotrophin-induced hippocampal synaptic plasticity. Science 1996, 273:1402-1406.
6. Shahbabian K., Chartrand P. Control of cytoplasmic mRNA localization. Cell Mol Life Sci 2012, 69:535-552.
7. Wu B., Piatkevich K.D., Lionnet T., Singer R.H., Verkhusha V.V. Modern fluorescent proteins and imaging technologies to study gene expression, nuclear localization, and dynamics. Curr Opin Cell Biol 2011, 23:310-317.
8. Lecuyer E., Yoshida H., Parthasarathy N., Alm C., Babak T., Cerovina T., Hughes T.R., Tomancak P., Krause H.M. Global analysis of mRNA localization reveals a prominent role in organizing cellular architecture and function. Cell 2007, 131:174-187.
9. Nevo-Dinur K., Nussbaum-Shochat A., Ben-Yehuda S., Amster-Choder O. Translation-independent localization of mRNA in E. coli. Science 2011, 331:1081-1084.
10. Lasko P. Translational control during early development. Prog Mol Biol Transl Sci 2009, 90:211-254.
11. Kislauskis E.H., Zhu X., Singer R.H. Sequences responsible for intracellular localization of beta-actin messenger RNA also affect cell phenotype. J Cell Biol 1994, 127:441-451.
12. Long R.M., Singer R.H., Meng X., Gonzalez I., Nasmyth K., Jansen R.P. Mating type switching in yeast controlled by asymmetric localization of ASH1 mRNA. Science 1997, 277:383-387.
13. Mowry K.L., Melton D.A. Vegetal messenger RNA localization directed by a 340-nt RNA sequence element in Xenopus oocytes. Science 1992, 255:991-994.
14. Macdonald P.M. mRNA localization: assembly of transport complexes and their incorporation into particles. Curr Opin Genet Dev 2011, 21:407-413.
15. Betley J.N., Heinrich B., Vernos I., Sardet C., Prodon F., Deshler J.O. Kinesin II mediates Vg1 mRNA transport in Xenopus oocytes. Curr Biol 2004, 14:219-224.
16. Bobola N., Jansen R.P., Shin T.H., Nasmyth K. Asymmetric accumulation of Ash1p in postanaphase nuclei depends on a myosin and restricts yeast mating-type switching to mother cells. Cell 1996, 84:699-709.
17. Schnorrer F., Bohmann K., Nusslein-Volhard C. The molecular motor dynein is involved in targeting swallow and bicoid RNA to the anterior pole of Drosophila oocytes. Nat Cell Biol 2000, 2:185-190.
18. Gu W., Deng Y., Zenklusen D., Singer R.H. A new yeast PUF family protein, Puf6p, represses ASH1 mRNA translation and is required for its localization. Genes Dev 2004, 18:1452-1465.
19. Wilhelm J.E., Hilton M., Amos Q., Henzel W.J. Cup is an eIF4E binding protein required for both the translational repression of oskar and the recruitment of Barentsz. J Cell Biol 2003, 163:1197-1204.
20. Ross A.F., Oleynikov Y., Kislauskis E.H., Taneja K.L., Singer R.H. Characterization of a beta-actin mRNA zipcode-binding protein. Mol Cell Biol 1997, 17:2158-2165.
21. Deshler J.O., Highett M.I., Schnapp B.J. Localization of Xenopus Vg1 mRNA by Vera protein and the endoplasmic reticulum. Science 1997, 276:1128-1131.
22. Havin L., Git A., Elisha Z., Oberman F., Yaniv K., Schwartz S.P., Standart N., Yisraeli J.K. RNA-binding protein conserved in both microtubule- and microfilament-based RNA localization. Genes Dev 1998, 12:1593-1598.
23. Boylan K.L., Mische S., Li M., Marques G., Morin X., Chia W., Hays T.S. Motility screen identifies Drosophila IGF-II mRNA-binding protein - zipcode-binding protein acting in oogenesis and synaptogenesis. PLoS Genet 2008, 4:e36.
24. Nielsen J., Christiansen J., Lykke-Andersen J., Johnsen A.H., Wewer U.M., Nielsen F.C. A family of insulin-like growth factor II mRNA-binding proteins represses translation in late development. Mol Cell Biol 1999, 19:1262-1270.
25. Martin K.C., Ephrussi A. mRNA localization: gene expression in the spatial dimension. Cell 2009, 136:719-730.
26. dos Santos G., Simmonds A.J., Krause H.M. A stem-loop structure in the wingless transcript defines a consensus motif for apical RNA transport. Development 2008, 135:133-143.
27. Mickleburgh I., Chabanon H., Nury D., Fan K., Burtle B., Chrzanowska-Lightowlers Z., Hesketh J. Elongation factor 1alpha binds to the region of the metallothionein-1 mRNA implicated in perinuclear localization - importance of an internal stem-loop. RNA 2006, 12:1397-1407.
28. Chartrand P., Meng X.H., Singer R.H., Long R.M. Structural elements required for the localization of ASH1 mRNA and of a green fluorescent protein reporter particle in vivo. Curr Biol 1999, 9:333-336.
29. Bullock S.L., Ringel I., Ish-Horowicz D., Lukavsky P.J. A'-form RNA helices are required for cytoplasmic mRNA transport in Drosophila. Nat Struct Mol Biol 2010, 17:703-709.
30. Serano T.L., Cohen R.S. A small predicted stem-loop structure mediates oocyte localization of Drosophila K10 mRNA. Development 1995, 121:3809-3818.
31. Ghosh S., Marchand V., Gaspar I., Ephrussi A. Control of RNP motility and localization by a splicing-dependent structure in oskar mRNA. Nat Struct Mol Biol 2012, 19:441-449.
32. Kim-Ha J., Webster P.J., Smith J.L., Macdonald P.M. Multiple RNA regulatory elements mediate distinct steps in localization of oskar mRNA. Development 1993, 119:169-178.
33. Hachet O., Ephrussi A. Splicing of oskar RNA in the nucleus is coupled to its cytoplasmic localization. Nature 2004, 428:959-963.
34. Dictenberg J.B., Swanger S.A., Antar L.N., Singer R.H., Bassell G.J. A direct role for FMRP in activity-dependent dendritic mRNA transport links filopodial-spine morphogenesis to fragile X syndrome. Dev Cell 2008, 14:926-939.
35. Darnell J.C., Jensen K.B., Jin P., Brown V., Warren S.T., Darnell R.B. Fragile X mental retardation protein targets G quartet mRNAs important for neuronal function. Cell 2001, 107:489-499.
36. Subramanian M., Rage F., Tabet R., Flatter E., Mandel J.L., Moine H. G-quadruplex RNA structure as a signal for neurite mRNA targeting. EMBO Rep 2011, 12:697-704.
37. Cruz J.A., Blanchet M.F., Boniecki M., Bujnicki J.M., Chen S.J., Cao S., Das R., Ding F., Dokholyan N.V., Flores S.C., et al. RNA-Puzzles: a CASP-like evaluation of RNA three-dimensional structure prediction. RNA 2012, 18:610-625.
38. Moult J., Pedersen J.T., Judson R., Fidelis K. A large-scale experiment to assess protein structure prediction methods. Proteins 1995, 23. ii-v.
39. Kato Y., Nakamura A. Roles of cytoplasmic RNP granules in intracellular RNA localization and translational control in the Drosophila oocyte. Dev Growth Differ 2011, 54:19-41.
40. Lange S., Katayama Y., Schmid M., Burkacky O., Brauchle C., Lamb D.C., Jansen R.P. Simultaneous transport of different localized mRNA species revealed by live-cell imaging. Traffic 2008, 9:1256-1267.
41. Tubing F., Vendra G., Mikl M., Macchi P., Thomas S., Kiebler M.A. Dendritically localized transcripts are sorted into distinct ribonucleoprotein particles that display fast directional motility along dendrites of hippocampal neurons. J Neurosci 2010, 30:4160-4170.
42. Mikl M., Vendra G., Kiebler M.A. Independent localization of MAP2, CaMKIIalpha and beta-actin RNAs in low copy numbers. EMBO Rep 2011, 12:1077-1084.
43. Batish M., van den Bogaard P., Kramer F.R., Tyagi S. Neuronal mRNAs travel singly into dendrites. Proc Natl Acad Sci USA 2012, 109:4645-4650.
44. Amrute-Nayak M., Bullock S.L. Single-molecule assays reveal that RNA localization signals regulate dynein-dynactin copy number on individual transcript cargoes. Nat Cell Biol 2012, 14:416-423.
45. Chekulaeva M., Hentze M.W., Ephrussi A. Bruno acts as a dual repressor of oskar translation, promoting mRNA oligomerization and formation of silencing particles. Cell 2006, 124:521-533.
46. Jambor H., Brunel C., Ephrussi A. Dimerization of oskar 3' UTRs promotes hitchhiking for RNA localization in the Drosophila oocyte. RNA 2011, 17:2049-2057.
47. Tanaka T., Kato Y., Matsuda K., Hanyu-Nakamura K., Nakamura A. Drosophila Mon2 couples Oskar-induced endocytosis with actin remodeling for cortical anchorage of the germ plasm. Development 2011, 138:2523-2532.
48. Tanaka T., Nakamura A. The endocytic pathway acts downstream of Oskar in Drosophila germ plasm assembly. Development 2008, 135:1107-1117.
49. Qualmann B., Kessels M.M. New players in actin polymerization - WH2-domain-containing actin nucleators. Trends Cell Biol 2009, 19:276-285.
50. Irion U., St Johnston D. bicoid RNA localization requires specific binding of an endosomal sorting complex. Nature 2007, 445:554-558.
51. Becht P., Konig J., Feldbrugge M. The RNA-binding protein Rrm4 is essential for polarity in Ustilago maydis and shuttles along microtubules. J Cell Sci 2006, 119:4964-4973.
52. Baumann S., Pohlmann T., Jungbluth M., Brachmann A., Feldbrugge M. Kinesin-3 and dynein mediate microtubule-dependent co-transport of mRNPs and endosomes. J Cell Sci 2012, 125:2740-2752.
53. Gould G.W., Lippincott-Schwartz J. New roles for endosomes: from vesicular carriers to multi-purpose platforms. Nat Rev Mol Cell Biol 2009, 10:287-292.
54. Driever W., Nusslein-Volhard C. A gradient of bicoid protein in Drosophila embryos. Cell 1988, 54:83-93.
55. Kim-Ha J., Smith J.L., Macdonald P.M. oskar mRNA is localized to the posterior pole of the Drosophila oocyte. Cell 1991, 66:23-35.
56. Heasman J., Quarmby J., Wylie C.C. The mitochondrial cloud of Xenopus oocytes: the source of germinal granule material. Dev Biol 1984, 105:458-469.
57. Melton D.A. Translocation of a localized maternal mRNA to the vegetal pole of Xenopus oocytes. Nature 1987, 328:80-82.
58. Zhang J., Houston D.W., King M.L., Payne C., Wylie C., Heasman J. The role of maternal VegT in establishing the primary germ layers in Xenopus embryos. Cell 1998, 94:515-524.
59. Takizawa P.A., Sil A., Swedlow J.R., Herskowitz I., Vale R.D. Actin-dependent localization of an RNA encoding a cell-fate determinant in yeast. Nature 1997, 389:90-93.
60. Jung H., Yoon B.C., Holt C.E. Axonal mRNA localization and local protein synthesis in nervous system assembly, maintenance and repair. Nat Rev Neurosci 2012, 13:308-324.
61. Campbell D.S., Holt C.E. Chemotropic responses of retinal growth cones mediated by rapid local protein synthesis and degradation. Neuron 2001, 32:1013-1026.
62. Dubnau J., Chiang A.S., Grady L., Barditch J., Gossweiler S., McNeil J., Smith P., Buldoc F., Scott R., Certa U., et al. The staufen/pumilio pathway is involved in Drosophila long-term memory. Curr Biol 2003, 13:286-296.
63. Davis L., Banker G.A., Steward O. Selective dendritic transport of RNA in hippocampal neurons in culture. Nature 1987, 330:477-479.
64. Martin K.C., Barad M., Kandel E.R. Local protein synthesis and its role in synapse-specific plasticity. Curr Opin Neurobiol 2000, 10:587-592.
65. Sheth U., Parker R. Decapping and decay of messenger RNA occur in cytoplasmic processing bodies. Science 2003, 300:805-808.
66. Nover L., Scharf K.D., Neumann D. Formation of cytoplasmic heat shock granules in tomato cell cultures and leaves. Mol Cell Biol 1983, 3:1648-1655.
67. Eystathioy T., Chan E.K., Tenenbaum S.A., Keene J.D., Griffith K., Fritzler M.J. A phosphorylated cytoplasmic autoantigen, GW182, associates with a unique population of human mRNAs within novel cytoplasmic speckles. Mol Biol Cell 2002, 13:1338-1351.
68. Bhattacharyya S.N., Habermacher R., Martine U., Closs E.I., Filipowicz W. Stress-induced reversal of microRNA repression and mRNA P-body localization in human cells. Cold Spring Harb Symp Quant Biol 2006, 71:513-521.
69. Lewis R.A., Mowry K.L. Ribonucleoprotein remodeling during RNA localization. Differentiation 2007, 75:507-518.