Heterogeneous cationic liposomes modified with 3β-{N-[(N′, N ′-dimethylamino)ethyl]carbamoyl}cholesterol can induce partial conformational changes in messenger RNA and regulate translation in an escherichia coli cell-free translation system

Langmuir

Volumn 29, Issue 6, 2013, Pages 1899-1907

  Suga, Keishi ^a   Tanabe, Tomoyuki ^a   Umakoshi, Hiroshi ^a  

^a OSAKA UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

CARBAMOYL; CATIONIC LIPOSOMES; CELL-FREE TRANSLATION SYSTEMS; CONFORMATIONAL CHANGE; MEMBRANE FLUIDITY; MESSENGER RNA; MESSENGER RNAS (MRNA); UV-RESONANCE RAMAN SPECTROSCOPY;

CHOLESTEROL; ESCHERICHIA COLI; GLYCEROL; LIPOSOMES; MEMBRANES; PROPANE;

RNA;

1,6 DIPHENYL 1,3,5 HEXATRIENE; 2 NAPHTHYLAMINE; 3 (N (N',N' DIMETHYLAMINOETHANE)CARBAMOYL)CHOLESTEROL; 3-(N-(N',N'-DIMETHYLAMINOETHANE)CARBAMOYL)CHOLESTEROL; CHOLESTEROL; DRUG DERIVATIVE; LAURDAN; LAURIC ACID DERIVATIVE; LIPOSOME; MESSENGER RNA; NUCLEOTIDE;

ARTICLE; CHEMICAL PHENOMENA; CHEMISTRY; CONFORMATION; CYTOLOGY; DRUG EFFECT; ESCHERICHIA COLI; GENETICS; MEMBRANE FLUIDITY; METABOLISM; PHYSICAL CHEMISTRY; PROTEIN SYNTHESIS;

2-NAPHTHYLAMINE; CHOLESTEROL; DIPHENYLHEXATRIENE; ESCHERICHIA COLI; HYDROPHOBIC AND HYDROPHILIC INTERACTIONS; LAURATES; LIPOSOMES; MEMBRANE FLUIDITY; NUCLEIC ACID CONFORMATION; NUCLEOTIDES; PHYSICOCHEMICAL PROCESSES; PROTEIN BIOSYNTHESIS; RNA, MESSENGER;

EID: 84873691459     PISSN: 07437463     EISSN: 15205827     Source Type: Journal    
DOI: 10.1021/la3050576     Document Type: Article

References (60)

1. Hannon, G. J. RNA interference Nature 2002, 418 (6894) 244-251
2. Xu, Y.; Szoka, F. C., Jr. Mechanism of DNA release from cationic liposome/DNA complexes used in cell transfection Biochemistry 1996, 35 (18) 5616-5623
3. Zohra, F. T.; Chowdhury, E. H.; Tada, S.; Hoshiba, T.; Akaike, T. Effective delivery with enhanced translational activity synergistically accelerates mRNA-based transfection Biochem. Biophys. Res. Commun. 2007, 358 (1) 373-378
4. Koynova, R.; Tenchov, B. Cationic phospholipids: Structure-transfection activity relationships Soft Matter 2009, 5 (17) 3187-3200
5. Zohra, F. T.; Chowdhury, E. H.; Nagaoka, M.; Akaike, T. Drastic effect of nanoapatite particles on liposome-mediated mRNA delivery to mammalian cells Anal. Biochem. 2005, 345 (1) 164-166
6. Xu, L.; Anchordoquy, T. J. Cholesterol domains in cationic lipid/DNA complexes improve transfection Biochim. Biophys. Acta, Biomembr. 2008, 1778 (10) 2177-2181
7. Macdonald, R. C.; Rakhmanova, V. A.; Choi, K. L.; Rosenzweig, H. S.; Lahiri, M. K. O -Ethylphosphatidylcholine: A metabolizable cationic phospholipid which is a serum-compatible DNA transfection agent J. Pharm. Sci. 1999, 88 (9) 896-904
8. Chabaud, P.; Camplo, M.; Payet, D.; Serin, G.; Moreau, L.; Barthélémy, P.; Grinstaff, M. W. Cationic nucleoside lipids for gene delivery Bioconjugate Chem. 2006, 17 (2) 466-472
9. Klein, E.; Ciobanu, M.; Klein, J.; MacHi, V.; Leborgne, C.; Vandamme, T.; Frisch, B.; Pons, F.; Kichler, A.; Zuber, G.; Lebeau, L. "HFP" fluorinated cationic lipids for enhanced lipoplex stability and gene delivery Bioconjugate Chem. 2010, 21 (2) 360-371
10. Klein, E.; Leborgne, C.; Ciobanu, M.; Klein, J.; Frisch, B.; Pons, F.; Zuber, G.; Scherman, D.; Kichler, A.; Lebeau, L. Nucleic acid transfer with hemifluorinated polycationic lipids Biomaterials 2010, 31 (17) 4781-4788
11. Giatrellis, S.; Nikolopoulos, G.; Sideratou, Z.; Nounesis, G. Calorimetric study of the interaction of binary DMTAP/DOTAP cationic liposomes with plasmid DNA J. Liposome Res. 2009, 19 (3) 220-230
12. Muñoz-Úbeda, M.; Rodríguez-Pulido, A.; Nogales, A.; Martín-Molina, A.; Aicart, E.; Junquera, E. Effect of lipid composition on the structure and theoretical phase diagrams of DC-Chol/DOPE-DNA lipoplexes Biomacromolecules 2010, 11 (12) 3332-3340
13. Barreau, C.; Dutertre, S.; Paillard, L.; Osborne, H. B. Liposome-mediated RNA transfection should be used with caution RNA 2006, 12 (10) 1790-1793
14. Suga, K.; Tanabe, T.; Tomita, H.; Shimanouchi, T.; Umakoshi, H. Conformational change of single-stranded RNAs induced by liposome binding Nucleic Acids Res. 2011, 39 (20) 8891-8900
15. Suga, K.; Umakoshi, H.; Tomita, H.; Tanabe, T.; Shimanouchi, T.; Kuboi, R. Liposomes destabilize tRNA during heat stress Biotechnol. J. 2010, 5 (5) 526-529
16. Bui, H. T.; Umakoshi, H.; Ngo, K. X.; Nishida, M.; Shimanouchi, T.; Kuboi, R. Liposome membrane itself can affect gene expression in the Escherichia coli cell-free translation system Langmuir 2008, 24 (19) 10537-10542
17. Umakoshi, H.; Nishida, A. Modulation of yeast hexokinase on bio-inspired membranes Biochem. Eng. J. 2012, 69, 138-143
18. Zou, S.; Scarfo, K.; Nantz, M. H.; Hecker, J. G. Lipid-mediated delivery of RNA is more efficient than delivery of DNA in non-dividing cells Int. J. Pharm. 2010, 389 (1-2) 232-243
19. Luisi, P. L. Chemical aspects of synthetic biology Chem. Biodiversity 2007, 4 (4) 603-621
20. Stano, P.; Carrara, P.; Kuruma, Y.; Pereira De Souza, T.; Luisi, P. L. Compartmentalized reactions as a case of soft-matter biotechnology: Synthesis of proteins and nucleic acids inside lipid vesicles J. Mater. Chem 2011, 21 (47) 18887-18902
21. Kurihara, K.; Tamura, M.; Shohda, K.-I.; Toyota, T.; Suzuki, K.; Sugawara, T. Self-reproduction of supramolecular giant vesicles combined with the amplification of encapsulated DNA Nat. Chem. 2011, 3 (10) 775-781
22. Ricardo, A.; Szostak, J. W. Origin of life on earth Sci. Am. 2009, 301 (3) 54-61
23. Walde, P. Building artificial cells and protocell models: Experimental approaches with lipid vesicles BioEssays 2010, 32 (4) 296-303
24. Walde, P. Phospholipid membranes as regulators of localized activity Chem. Biol. 2010, 17 (9) 922-923
25. Kato, A.; Tsuji, A.; Yanagisawa, M.; Saeki, D.; Juni, K.; Morimoto, Y.; Yoshikawa, K. Phase separation on a phospholipid membrane inducing a characteristic localization of DNA accompanied by its structural transition J. Phys. Chem. Lett. 2010, 1 (23) 3391-3395
26. Tsuji, A.; Yoshikawa, K. ON-OFF switching of transcriptional activity of large DNA through a conformational transition in cooperation with phospholipid membrane J. Am. Chem. Soc. 2010, 132 (35) 12464-12471
27. Kato, A.; Shindo, E.; Sakaue, T.; Tsuji, A.; Yoshikawa, K. Conformational transition of giant DNA in a confined space surrounded by a phospholipid membrane Biophys. J. 2009, 97 (6) 1678-1686
28. Bui, H. T.; Umakoshi, H.; Suga, K.; Tanabe, T.; Ngo, K. X.; Shimanouchi, T.; Kuboi, R. Cationic liposome can interfere mRNA translation in an E. coli cell-free translation system Biochem. Eng. J. 2010, 52 (1) 38-43
29. Umakoshi, H.; Suga, K.; Bui, H. T.; Nishida, M.; Shimanouchi, T.; Kuboi, R. Charged liposome affects the translation and folding steps of in vitro expression of green fluorescent protein J. Biosci. Bioeng. 2009, 108 (5) 450-454
30. Tachibana, R.; Harashima, H.; Ishida, T.; Shinohara, Y.; Hino, M.; Terada, H.; Baba, Y.; Kiwada, H. Effect of cationic liposomes in an in vitro transcription and translation system Biol. Pharm. Bull. 2002, 25 (4) 529-531
31. Bui, H. T.; Umakoshi, H.; Suga, K.; Nishida, M.; Shimanouchi, T.; Kuboi, R. Negatively charged liposome as a potent inhibitor of post-translation during in vitro synthesis of green fluorescent protein Biochem. Eng. J. 2009, 46 (2) 154-160
32. Hayashi, K.; Shimanouchi, T.; Kato, K.; Miyazaki, T.; Nakamura, A.; Umakoshi, H. Span 80 vesicles have a more fluid, flexible and "wet" surface than phospholipid liposomes Colloids Surf., B 2011, 87 (1) 28-35
33. Lentz, B. R. Use of fluorescent probes to monitor molecular order and motions within liposome bilayers Chem. Phys. Lipids 1993, 64 (1-3) 99-116
34. Parasassi, T.; Krasnowska, E. K.; Bagatolli, L.; Gratton, E. Laurdan and Prodan as polarity-sensitive fluorescent membrane probes J. Fluoresc. 1998, 8 (4) 365-373
35. Parasassi, T.; Gratton, E. Membrane lipid domains and dynamics as detected by Laurdan fluorescence J. Fluoresc. 1995, 5 (1) 59-69
36. Parasassi, T.; De Stasio, G.; Ravagnan, G.; Rusch, R. M.; Gratton, E. Quantitation of lipid phases in phospholipid vesicles by the generalized polarization of Laurdan fluorescence Biophys. J. 1991, 60 (1) 179-189
37. Marsden, S.; Nardelli, M.; Linder, P.; McCarthy, J. E. G. Unwinding single RNA molecules using helicases involved in eukaryotic translation initiation J. Mol. Biol. 2006, 361 (2) 327-335
38. Laso, M. R. V.; Zhu, D.; Sagliocco, F.; Brown, A. J. P.; Tuite, M. F.; McCarthy, J. E. G. Inhibition of translational initiation in the yeast Saccharomyces cerevisiae as a function of the stability and position of hairpin structures in the mRNA leader J. Biol. Chem. 1993, 268, 6453-6462
39. Lilley, D. M. J. Structure, folding and mechanisms of ribozymes Curr. Opin. Struc. Biol. 2005, 15 (3, special issue) 313-323
40. Hirsch-Lerner, D.; Barenholz, Y. Hydration of lipoplexes commonly used in gene delivery: Follow-up by Laurdan fluorescence changes and quantification by differential scanning calorimetry Biochim. Biophys. Acta, Biomembr. 1999, 1461 (1) 47-57
41. Viard, M.; Gallay, J.; Vincent, M.; Meyer, O.; Robert, B.; Paternostre, M. Laurdan solvatochromism: Solvent dielectric relaxation and intramolecular excited-state reaction Biophys. J. 1997, 73 (4) 2221-2234
42. Critchpield, F. E.; Gibson, J. A., Jr.; Hall, J. L. Dielectric constant for the dioxane-water system from 20 to 35 J. Am. Chem. Soc. 1953, 75 (8) 1991-1992
43. Thomas, C. F.; Luisi, P. L. RNA selectively interacts with vesicles depending on their size J. Phys. Chem. B 2005, 109 (30) 14544-14550
44. Lindén, M. V.; Meinander, K.; Helle, A.; Yohannes, G.; Riekkola, M.-L.; Butcher, S. J.; Viitala, T.; Wiedmer, S. K. Characterization of phosphatidylcholine/polyethylene glycol-lipid aggregates and their use as coatings and carriers in capillary electrophoresis Electrophoresis 2008, 29 (4) 852-862
45. Morozkin, E. S.; Laktionov, P. P.; Rykova, E. Y.; Vlassov, V. V. Fluorometric quantification of RNA and DNA in solutions containing both nucleic acids Anal. Biochem. 2003, 322 (1) 48-50
46. De Almeida, R. F. M.; Fedorov, A.; Prieto, M. Sphingomyelin/ phosphatidylcholine/cholesterol phase diagram: Boundaries and composition of lipid rafts Biophys. J. 2003, 85 (4) 2406-2416
47. Veatch, S. L.; Keller, S. L. Miscibility phase diagrams of giant vesicles containing sphingomyelin Phys. Rev. Lett. 2005, 94 (14 148101
48. Veatch, S. L.; Keller, S. L. Miscibility phase diagrams of giant vesicles containing sphingomyelin Biophys. J. 2003, 85 (5) 3074-3083
49. Troutier, A.-L.; Véron, L.; Delair, T.; Pichot, C.; LadavieÌre, C. New insights into self-organization of a model lipid mixture and quantification of its adsorption on spherical polymer particles Langmuir 2005, 21 (22) 9901-9910
50. Michanek, A.; Kristen, N.; Höök, F.; Nylander, T.; Sparr, E.; RNA, D. N. A. interactions with zwitterionic and charged lipid membranes: A DSC and QCM-D study Biochim. Biophys. Acta, Biomembr. 2010, 1798 (4) 829-838
51. Kikuchi, I. S.; Viviani, W.; Carmona-Ribeiro, A. M. Nucleotide insertion in cationic bilayers J. Phys. Chem. A 1999, 103 (40) 8050-8055
52. Shimanouchi, T.; Sasaki, M.; Hiroiwa, A.; Yoshimoto, N.; Miyagawa, K.; Umakoshi, H.; Kuboi, R. Relationship between the mobility of phosphocholine headgroups of liposomes and the hydrophobicity at the membrane interface: A characterization with spectrophotometric measurements Colloids Surf., B 2011, 88 (1) 221-230
53. Auffinger, P.; Westhof, E. RNA hydration: Three nanoseconds of multiple molecular dynamics simulations of the solvated tRNA(Asp) anticodon hairpin J. Mol. Biol. 1997, 269 (3) 326-341
54. Shih, P.; Pedersen, L. G.; Gibbs, P. R.; Wolfenden, R. Hydrophobicities of the nucleic acid bases: Distribution coefficients from water to cyclohexane J. Mol. Biol. 1998, 280 (3) 421-430
55. 12 and the influence of phosphorothioate substitution Nucleic Acids Res. 1997, 25 (20) 4098-4105
56. Nagatomo, S.; Nagai, M.; Kitagawa, T. A new way to understand quaternary structure changes of hemoglobin upon ligand binding on the basis of UV-resonance Raman evaluation of intersubunit interactions J. Am. Chem. Soc. 2011, 133 (26) 10101-10110
57. Benevides, J. M.; Overman, S. A.; Thomas, G. J., Jr. Raman, polarized Raman and ultraviolet resonance Raman spectroscopy of nucleic acids and their complexes J. Raman Spectrosc. 2005, 36 (4) 279-299
58. Gregoire, C. J.; Gautheret, D.; Loret, E. P. No tRNA3Lys unwinding in a complex with HIVNCp7 J. Biol. Chem. 1997, 272 (40) 25143-25148
59. Johnson, N. P.; Baase, W. A.; Von Hippel, P. H. Low energy CD of RNA hairpin unveils a loop conformation required for λN antitermination activity J. Biol. Chem. 2005, 280 (37) 32177-32183
60. Lonez, C.; Vandenbranden, M.; Ruysschaert, J.-M. Cationic liposomal lipids: From gene carriers to cell signaling Prog. Lipid Res. 2008, 47 (5) 340-347