-
1
-
-
84865813214
-
The pig as a model animal for studying cognition and neurobehavioral disorders
-
Gieling ET, Schuurman T, Nordquist RE, van der Staay FJ, (2011) The pig as a model animal for studying cognition and neurobehavioral disorders. Curr Top Behav Neurosci 7: 359-383.
-
(2011)
Curr Top Behav Neurosci
, vol.7
, pp. 359-383
-
-
Gieling, E.T.1
Schuurman, T.2
Nordquist, R.E.3
van der Staay, F.J.4
-
2
-
-
0034117004
-
The origin of the domestic pig: independent domestication and subsequent introgression
-
Giuffra E, Kijas JM, Amarger V, Carlborg O, Jeon JT, et al. (2000) The origin of the domestic pig: independent domestication and subsequent introgression. Genetics 154: 1785-1791.
-
(2000)
Genetics
, vol.154
, pp. 1785-1791
-
-
Giuffra, E.1
Kijas, J.M.2
Amarger, V.3
Carlborg, O.4
Jeon, J.T.5
-
3
-
-
0035023792
-
A phylogenetic study of the origin of the domestic pig estimated from the near-complete mtDNA genome
-
Kijas JM, Andersson L, (2001) A phylogenetic study of the origin of the domestic pig estimated from the near-complete mtDNA genome. J Mol Evol 52: 302-308.
-
(2001)
J Mol Evol
, vol.52
, pp. 302-308
-
-
Kijas, J.M.1
Andersson, L.2
-
4
-
-
20144362963
-
Worldwide phylogeography of wild boar reveals multiple centers of pig domestication
-
Larson G, Dobney K, Albarella U, Fang M, Matisoo-Smith E, et al. (2005) Worldwide phylogeography of wild boar reveals multiple centers of pig domestication. Science 307: 1618-1621.
-
(2005)
Science
, vol.307
, pp. 1618-1621
-
-
Larson, G.1
Dobney, K.2
Albarella, U.3
Fang, M.4
Matisoo-Smith, E.5
-
5
-
-
0007883443
-
The potential of Chinese swine breeds to improve pork production efficiency in the US
-
McLaren DG, (1990) The potential of Chinese swine breeds to improve pork production efficiency in the US. Anim Breed Abstr 58: 347-368.
-
(1990)
Anim Breed Abstr
, vol.58
, pp. 347-368
-
-
McLaren, D.G.1
-
6
-
-
79953706639
-
Genome-wide footprints of pig domestication and selection revealed through massive parallel sequencing of pooled DNA
-
Amaral AJ, Ferretti L, Megens HJ, Crooijmans RP, Nie H, et al. (2011) Genome-wide footprints of pig domestication and selection revealed through massive parallel sequencing of pooled DNA. PLoS One 6: e14782.
-
(2011)
PLoS One
, vol.6
-
-
Amaral, A.J.1
Ferretti, L.2
Megens, H.J.3
Crooijmans, R.P.4
Nie, H.5
-
7
-
-
68349137618
-
Design of a high density SNP genotyping assay in the pig using SNPs identified and characterized by next generation sequencing technology
-
Ramos AM, Crooijmans RP, Affara NA, Amaral AJ, Archibald AL, et al. (2009) Design of a high density SNP genotyping assay in the pig using SNPs identified and characterized by next generation sequencing technology. PLoS One 4: e6524.
-
(2009)
PLoS One
, vol.4
-
-
Ramos, A.M.1
Crooijmans, R.P.2
Affara, N.A.3
Amaral, A.J.4
Archibald, A.L.5
-
8
-
-
79955587949
-
Extent of linkage disequilibrium and effective population size in Finnish Landrace and Finnish Yorkshire pig breeds
-
Uimari P, Tapio M, (2011) Extent of linkage disequilibrium and effective population size in Finnish Landrace and Finnish Yorkshire pig breeds. J Anim Sci 89: 609-614.
-
(2011)
J Anim Sci
, vol.89
, pp. 609-614
-
-
Uimari, P.1
Tapio, M.2
-
9
-
-
84855798536
-
Estimation of linkage disequilibrium in four US pig breeds
-
Badke YM, Bates RO, Ernst CW, Schwab C, Steibel JP, (2012) Estimation of linkage disequilibrium in four US pig breeds. BMC Genomics 13: 24.
-
(2012)
BMC Genomics
, vol.13
, pp. 24
-
-
Badke, Y.M.1
Bates, R.O.2
Ernst, C.W.3
Schwab, C.4
Steibel, J.P.5
-
10
-
-
54949147974
-
ADZE: a rarefaction approach for counting alleles private to combinations of populations
-
Szpiech ZA, Jakobsson M, Rosenberg NA, (2008) ADZE: a rarefaction approach for counting alleles private to combinations of populations. Bioinformatics 24: 2498-2504.
-
(2008)
Bioinformatics
, vol.24
, pp. 2498-2504
-
-
Szpiech, Z.A.1
Jakobsson, M.2
Rosenberg, N.A.3
-
11
-
-
34548292504
-
PLINK: a tool set for whole-genome association and population-based linkage analyses
-
Purcell S, Neale B, Todd-Brown K, Thomas L, Ferreira MA, et al. (2007) PLINK: a tool set for whole-genome association and population-based linkage analyses. Am J Hum Genet 81: 559-575.
-
(2007)
Am J Hum Genet
, vol.81
, pp. 559-575
-
-
Purcell, S.1
Neale, B.2
Todd-Brown, K.3
Thomas, L.4
Ferreira, M.A.5
-
12
-
-
0000122573
-
PHYLIP - Phylogeny Inference Package (Version 3.2)
-
Felsenstein J, (1989) PHYLIP - Phylogeny Inference Package (Version 3.2). Cladistics 5: 164-166.
-
(1989)
Cladistics
, vol.5
, pp. 164-166
-
-
Felsenstein, J.1
-
13
-
-
34547781750
-
MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
-
Tamura K, Dudley J, Nei M, Kumar S, (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24: 1596-1599.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 1596-1599
-
-
Tamura, K.1
Dudley, J.2
Nei, M.3
Kumar, S.4
-
14
-
-
33746512512
-
Principal components analysis corrects for stratification in genome-wide association studies
-
Price AL, Patterson NJ, Plenge RM, Weinblatt ME, Shadick NA, et al. (2006) Principal components analysis corrects for stratification in genome-wide association studies. Nat Genet 38: 904-909.
-
(2006)
Nat Genet
, vol.38
, pp. 904-909
-
-
Price, A.L.1
Patterson, N.J.2
Plenge, R.M.3
Weinblatt, M.E.4
Shadick, N.A.5
-
15
-
-
68949103876
-
Inferring weak population structure with the assistance of sample group information
-
Hubisz MJ, Falush D, Stephens M, Pritchard JK, (2009) Inferring weak population structure with the assistance of sample group information. Mol Ecol Resour 9: 1322-1332.
-
(2009)
Mol Ecol Resour
, vol.9
, pp. 1322-1332
-
-
Hubisz, M.J.1
Falush, D.2
Stephens, M.3
Pritchard, J.K.4
-
16
-
-
1342331102
-
DISTRUCT: a program for the graphical display of population structure
-
Rosenberg NA, (2004) DISTRUCT: a program for the graphical display of population structure. Molecular Ecology Notes 4: 137-138.
-
(2004)
Molecular Ecology Notes
, vol.4
, pp. 137-138
-
-
Rosenberg, N.A.1
-
17
-
-
0021566877
-
Estimating F-statistics for the analysis of population structure
-
Weir B, Cockerham CC (1984) Estimating F-statistics for the analysis of population structure. Evolution: 1358-1370.
-
(1984)
Evolution
, pp. 1358-1370
-
-
Weir, B.1
Cockerham, C.C.2
-
18
-
-
0036911353
-
Interrogating a high-density SNP map for signatures of natural selection
-
Akey JM, Zhang G, Zhang K, Jin L, Shriver MD, (2002) Interrogating a high-density SNP map for signatures of natural selection. Genome Res 12: 1805-1814.
-
(2002)
Genome Res
, vol.12
, pp. 1805-1814
-
-
Akey, J.M.1
Zhang, G.2
Zhang, K.3
Jin, L.4
Shriver, M.D.5
-
19
-
-
84890417804
-
The genetical structure of populations
-
Wright S, (1951) The genetical structure of populations. Annals of Eugenics 15: 323-354.
-
(1951)
Annals of Eugenics
, vol.15
, pp. 323-354
-
-
Wright, S.1
-
20
-
-
0015070635
-
Linkage disequilibrium and homozygosity of chromosome segments in finite populations
-
Sved JA, (1971) Linkage disequilibrium and homozygosity of chromosome segments in finite populations. Theor Popul Biol 2: 125-141.
-
(1971)
Theor Popul Biol
, vol.2
, pp. 125-141
-
-
Sved, J.A.1
-
21
-
-
26444519053
-
Extent and consistency across generations of linkage disequilibrium in commercial layer chicken breeding populations
-
Heifetz EM, Fulton JE, O'Sullivan N, Zhao H, Dekkers JC, et al. (2005) Extent and consistency across generations of linkage disequilibrium in commercial layer chicken breeding populations. Genetics 171: 1173-1181.
-
(2005)
Genetics
, vol.171
, pp. 1173-1181
-
-
Heifetz, E.M.1
Fulton, J.E.2
O'Sullivan, N.3
Zhao, H.4
Dekkers, J.C.5
-
22
-
-
52049099430
-
Linkage disequilibrium decay and haplotype block structure in the pig
-
Amaral AJ, Megens HJ, Crooijmans RP, Heuven HC, Groenen MA, (2008) Linkage disequilibrium decay and haplotype block structure in the pig. Genetics 179: 569-579.
-
(2008)
Genetics
, vol.179
, pp. 569-579
-
-
Amaral, A.J.1
Megens, H.J.2
Crooijmans, R.P.3
Heuven, H.C.4
Groenen, M.A.5
-
23
-
-
58149347836
-
A genome-scan method to identify selected loci appropriate for both dominant and codominant markers: a Bayesian perspective
-
Foll M, Gaggiotti O, (2008) A genome-scan method to identify selected loci appropriate for both dominant and codominant markers: a Bayesian perspective. Genetics 180: 977-993.
-
(2008)
Genetics
, vol.180
, pp. 977-993
-
-
Foll, M.1
Gaggiotti, O.2
-
24
-
-
0036226603
-
BLAT-the BLAST-like alignment tool
-
Kent WJ, (2002) BLAT-the BLAST-like alignment tool. Genome Res 12: 656-664.
-
(2002)
Genome Res
, vol.12
, pp. 656-664
-
-
Kent, W.J.1
-
25
-
-
12244274368
-
Genetic variation analysis within and among Chinese indigenous swine populations using microsatellite markers
-
Fan B, Wang ZG, Li YJ, Zhao XL, Liu B, et al. (2002) Genetic variation analysis within and among Chinese indigenous swine populations using microsatellite markers. Anim Genet 33: 422-427.
-
(2002)
Anim Genet
, vol.33
, pp. 422-427
-
-
Fan, B.1
Wang, Z.G.2
Li, Y.J.3
Zhao, X.L.4
Liu, B.5
-
26
-
-
33744486324
-
Genetic diversity within and between European pig breeds using microsatellite markers
-
SanCristobal M, Chevalet C, Haley CS, Joosten R, Rattink AP, et al. (2006) Genetic diversity within and between European pig breeds using microsatellite markers. Anim Genet 37: 189-198.
-
(2006)
Anim Genet
, vol.37
, pp. 189-198
-
-
SanCristobal, M.1
Chevalet, C.2
Haley, C.S.3
Joosten, R.4
Rattink, A.P.5
-
27
-
-
0034101312
-
Genetic diversity of eleven European pig breeds
-
Laval G, Iannuccelli N, Legault C, Milan D, Groenen MA, et al. (2000) Genetic diversity of eleven European pig breeds. Genet Sel Evol 32: 187-203.
-
(2000)
Genet Sel Evol
, vol.32
, pp. 187-203
-
-
Laval, G.1
Iannuccelli, N.2
Legault, C.3
Milan, D.4
Groenen, M.A.5
-
28
-
-
10744227983
-
Genetic variation and relationships of eighteen Chinese indigenous pig breeds
-
Yang SL, Wang ZG, Liu B, Zhang GX, Zhao SH, et al. (2003) Genetic variation and relationships of eighteen Chinese indigenous pig breeds. Genet Sel Evol 35: 657-671.
-
(2003)
Genet Sel Evol
, vol.35
, pp. 657-671
-
-
Yang, S.L.1
Wang, Z.G.2
Liu, B.3
Zhang, G.X.4
Zhao, S.H.5
-
29
-
-
33747389021
-
Mitochondrial diversity in European and Chinese pigs is consistent with population expansions that occurred prior to domestication
-
Fang M, Andersson L, (2006) Mitochondrial diversity in European and Chinese pigs is consistent with population expansions that occurred prior to domestication. Proc Biol Sci 273: 1803-1810.
-
(2006)
Proc Biol Sci
, vol.273
, pp. 1803-1810
-
-
Fang, M.1
Andersson, L.2
-
30
-
-
0037637623
-
[Studies of population genetic relationships among 24 Chinese and exotic pig breeds using AFLP analysis]
-
Ren J, Huang LS, Ai HS, Gary E, Gao J, et al. (2002) [Studies of population genetic relationships among 24 Chinese and exotic pig breeds using AFLP analysis]. Yi Chuan Xue Bao 29: 774-781.
-
(2002)
Yi Chuan Xue Bao
, vol.29
, pp. 774-781
-
-
Ren, J.1
Huang, L.S.2
Ai, H.S.3
Gary, E.4
Gao, J.5
-
31
-
-
0034863638
-
Genetic relationship amongst the major non-coding regions of mitochondrial DNAs in wild boars and several breeds of domesticated pigs
-
Okumura N, Kurosawa Y, Kobayashi E, Watanobe T, Ishiguro N, et al. (2001) Genetic relationship amongst the major non-coding regions of mitochondrial DNAs in wild boars and several breeds of domesticated pigs. Anim Genet 32: 139-147.
-
(2001)
Anim Genet
, vol.32
, pp. 139-147
-
-
Okumura, N.1
Kurosawa, Y.2
Kobayashi, E.3
Watanobe, T.4
Ishiguro, N.5
-
32
-
-
66249122107
-
Mapping genes for complex traits in domestic animals and their use in breeding programmes
-
Goddard ME, Hayes BJ, (2009) Mapping genes for complex traits in domestic animals and their use in breeding programmes. Nat Rev Genet 10: 381-391.
-
(2009)
Nat Rev Genet
, vol.10
, pp. 381-391
-
-
Goddard, M.E.1
Hayes, B.J.2
-
33
-
-
35648953308
-
Efficient mapping of mendelian traits in dogs through genome-wide association
-
Karlsson EK, Baranowska I, Wade CM, Salmon Hillbertz NH, Zody MC, et al. (2007) Efficient mapping of mendelian traits in dogs through genome-wide association. Nat Genet 39: 1321-1328.
-
(2007)
Nat Genet
, vol.39
, pp. 1321-1328
-
-
Karlsson, E.K.1
Baranowska, I.2
Wade, C.M.3
Salmon Hillbertz, N.H.4
Zody, M.C.5
-
34
-
-
79955089541
-
A 6-bp deletion in the TYRP1 gene causes the brown colouration phenotype in Chinese indigenous pigs
-
Ren J, Mao H, Zhang Z, Xiao S, Ding N, et al. (2011) A 6-bp deletion in the TYRP1 gene causes the brown colouration phenotype in Chinese indigenous pigs. Heredity 106: 862-868.
-
(2011)
Heredity
, vol.106
, pp. 862-868
-
-
Ren, J.1
Mao, H.2
Zhang, Z.3
Xiao, S.4
Ding, N.5
-
35
-
-
78049419228
-
Identifying signatures of natural selection in Tibetan and Andean populations using dense genome scan data
-
Bigham A, Baucher M, Pinto D, Mao X, Akey JM, et al. (2010) Identifying signatures of natural selection in Tibetan and Andean populations using dense genome scan data. PLoS Genet 6: e1001116.
-
(2010)
PLoS Genet
, vol.6
-
-
Bigham, A.1
Baucher, M.2
Pinto, D.3
Mao, X.4
Akey, J.M.5
-
36
-
-
84856022397
-
Genetic adaptation to high altitude in the Ethiopian highlands
-
Scheinfeldt LB, Soi S, Thompson S, Ranciaro A, Woldemeskel D, et al. (2012) Genetic adaptation to high altitude in the Ethiopian highlands. Genome Biology 13: R1.
-
(2012)
Genome Biology
, vol.13
-
-
Scheinfeldt, L.B.1
Soi, S.2
Thompson, S.3
Ranciaro, A.4
Woldemeskel, D.5
-
37
-
-
84864398778
-
The yak genome and adaptation to life at high altitude
-
Qiu Q, Zhang G, Ma T, Qian W, Wang J, et al. (2012) The yak genome and adaptation to life at high altitude. Nat Genet 44: 946-949.
-
(2012)
Nat Genet
, vol.44
, pp. 946-949
-
-
Qiu, Q.1
Zhang, G.2
Ma, T.3
Qian, W.4
Wang, J.5
-
38
-
-
0037155908
-
Differential activities of murine single minded 1 (SIM1) and SIM2 on a hypoxic response element. Cross-talk between basic helix-loop-helix/per-Arnt-Sim homology transcription factors
-
Woods SL, Whitelaw ML, (2002) Differential activities of murine single minded 1 (SIM1) and SIM2 on a hypoxic response element. Cross-talk between basic helix-loop-helix/per-Arnt-Sim homology transcription factors. J Biol Chem 277: 10236-10243.
-
(2002)
J Biol Chem
, vol.277
, pp. 10236-10243
-
-
Woods, S.L.1
Whitelaw, M.L.2
-
39
-
-
0032529054
-
Altered respiratory responses to hypoxia in mutant mice deficient in neuronal nitric oxide synthase
-
Kline DD, Yang T, Huang PL, Prabhakar NR, (1998) Altered respiratory responses to hypoxia in mutant mice deficient in neuronal nitric oxide synthase. J Physiol 511 (Pt 1): 273-287.
-
(1998)
J Physiol
, vol.511
, Issue.Pt 1
, pp. 273-287
-
-
Kline, D.D.1
Yang, T.2
Huang, P.L.3
Prabhakar, N.R.4
-
40
-
-
36249015281
-
The ADAMTS12 metalloproteinase exhibits anti-tumorigenic properties through modulation of the Ras-dependent ERK signalling pathway
-
Llamazares M, Obaya AJ, Moncada-Pazos A, Heljasvaara R, Espada J, et al. (2007) The ADAMTS12 metalloproteinase exhibits anti-tumorigenic properties through modulation of the Ras-dependent ERK signalling pathway. J Cell Sci 120: 3544-3552.
-
(2007)
J Cell Sci
, vol.120
, pp. 3544-3552
-
-
Llamazares, M.1
Obaya, A.J.2
Moncada-Pazos, A.3
Heljasvaara, R.4
Espada, J.5
-
41
-
-
0028844260
-
Interstitial deletion of the endothelin-B receptor gene in the spotting lethal (sl) rat
-
Ceccherini I, Zhang AL, Matera I, Yang G, Devoto M, et al. (1995) Interstitial deletion of the endothelin-B receptor gene in the spotting lethal (sl) rat. Hum Mol Genet 4: 2089-2096.
-
(1995)
Hum Mol Genet
, vol.4
, pp. 2089-2096
-
-
Ceccherini, I.1
Zhang, A.L.2
Matera, I.3
Yang, G.4
Devoto, M.5
-
42
-
-
0031828292
-
A missense mutation in the endothelin-B receptor gene is associated with Lethal White Foal Syndrome: an equine version of Hirschsprung disease
-
Metallinos DL, Bowling AT, Rine J, (1998) A missense mutation in the endothelin-B receptor gene is associated with Lethal White Foal Syndrome: an equine version of Hirschsprung disease. Mamm Genome 9: 426-431.
-
(1998)
Mamm Genome
, vol.9
, pp. 426-431
-
-
Metallinos, D.L.1
Bowling, A.T.2
Rine, J.3
|