Profile of the culturable microbiome capable of producing acyl-homoserine lactone in the tobacco phyllosphere

Journal of Environmental Sciences (China)

Volumn 25, Issue 2, 2013, Pages 357-366

  Lv, Di ^a   Ma, Anzhou ^a   Tang, Xuanming ^b   Bai, Zhihui ^a   Qi, Hongyan ^a   Zhuang, Guoqiang ^a  

^a RESEARCH CENTER FOR ECO ENVIRONMENTAL SCIENCES   (China)

^b INSTITUTE OF PLANT PROTECTION   (China)

Author keywords

Bacteria; Interaction; N acyl homoserine lactone; Phyllosphere

Indexed keywords

16S RRNA GENE; 16S RRNA GENE SEQUENCING; ACINETOBACTERS; ACYL-HOMOSERINE LACTONES; BACTERIAL POPULATION; CULTURABLE; DIFFUSIBLE SIGNALS; ECOLOGICAL ROLES; ENTEROBACTER; GAMMAPROTEOBACTERIA; INTERACTION; LARGE POPULATION; MICROBIOME; N-ACYL-HOMOSERINE LACTONES; PANTOEA; PHYLLOSPHERES; PHYLOGENETIC GROUPS; PLANT HEALTHS; QUORUM-SENSING; SERRATIA; TOBACCO LEAF; WHOLE-CELL BIOSENSORS;

BIOSENSORS; GENES; PLANTS (BOTANY); POPULATION STATISTICS; RNA; TOBACCO;

BACTERIA;

GAMMA BUTYROLACTONE DERIVATIVE;

BACTERIUM; BIOASSAY; ESTER; PHYLLOSPHERE; POPULATION SIZE; SPECIES DIVERSITY; TOBACCO;

ARTICLE; BACTERIUM; CLASSIFICATION; METABOLISM; METAGENOME; MICROBIOLOGY; PHYLOGENY; PHYSIOLOGY; QUORUM SENSING; TOBACCO;

ACYL-BUTYROLACTONES; BACTERIA; METAGENOME; PHYLOGENY; QUORUM SENSING; TOBACCO;

EID: 84873557998     PISSN: 10010742     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1001-0742(12)60027-8     Document Type: Article

References (40)

1. Akutsu K, Hirat M, Yamamota M, Hirayae K, Okuyama S, Hibi T Growth inhibition of Botrytis spp. by Serratia marcescens B2 isolated from tomato phylloplane. Annals of Phytopathological Society of Japan 1993, 59(1):18-25.
2. Ashelford KE, Chuzhanova NA, Fry JC, Jones AJ, Weightman AJ New screening software shows that most recent large 16S rRNA gene clone libraries contain chimeras. Applied and Environmental Microbiology 2006, 72(9):5734-5741.
3. Cha C, Gao P, Chen YC, Shaw PD, Farrand SK Production of acyl-homoserine lactone quorum-sensing signals by Gram-negative plant-associated bacteria. Molecular Plant-Microbe Interactions 1998, 11(11):1119-1129.
4. Chun J, Lee JH, Jung Y, Kim M, Kim S, Kim BK, et al. EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. International Journal of Systematic and Evolutionary Microbiology 2007, 57(10):2259-2261.
5. Dulla G, Lindow SE Quorum size of Pseudomonas syringae is small and dictated by water availability on the leaf surface. Proceedings of the National Academy of Sciences of the United States of America 2008, 105(8):3082-3087.
6. Dulla G, Marco M, Quinones B, Lindow S A closer look at Pseudomonas syringae as a leaf colonist - the pathogen P. syringae thrives on healthy plants by employing quorum sensing, virulence factors, and other traits. Asm News 2005, 71(10):469-475.
7. Dulla GFJ, Lindow SE Acyl-homoserine lactone-mediated cross talk among epiphytic bacteria modulates behavior of Pseudomonas syringae on leaves. The ISME Journal 2009, 3(7):825-834.
8. Elasri M, Delorme S, Lemanceau P, Stewart G, Laue B, Glick-mann E, et al. Acyl-homoserine lactone production is more common among plant-associated Pseudomonas spp. than among soilborne Pseudomonas spp. Applied and Environmental Microbiology 2001, 67(3):1198-1209.
9. Freiberg E Microclimatic parameters influencing nitrogen fixation in the phyllosphere in a Costa Rican premontane rain forest. Oecologia 1998, 117(1-2):9-18.
10. Furnkranz M, Wanek W, Richter A, Abell G, Rasche F, Ses-sitsch A Nitrogen fixation by phyllosphere bacteria associated with higher plants and their colonizing epiphytes of a tropical lowland rainforest of Costa Rica. The ISME Journal 2008, 2(5):561-570.
11. Hunter PJ, Hand P, Pink D, Whipps JM, Bending GD Both leaf properties and microbe-microbe interactions influence within-species variation in bacterial population diversity and structure in the lettuce (Lactuca species) phyllosphere. Applied and Environmental Microbiology 2010, 76(24):8117-8125.
12. Ishii S, Sadowsky MJ Applications of the rep-PCR DNA fingerprinting technique to study microbial diversity, ecology and evolution. Environmental Microbiology 2009, 11(4):733-740.
13. Jones KM, Sharopova N, Lohar DP, Zhang JQ, VandenBosch KA, Walker GC Differential response of the plant Medicago truncatula to its symbiont Sinorhizobium meliloti or an exopolysaccharide-deficient mutant. Proceedings of the National Academy of Sciences of the United States of America 2008, 105(2):704-709.
14. Kim YC, Leveau JHJ, Gardener BBM, Pierson EA, Pierson LS, Ryu CM The multifactorial basis for plant health promotion by plant-associated bacteria. Applied and Environmental Microbiology 2011, 77(5):1548-1555.
15. Kishore GK, Pande S, Podile AR Biological control of late leaf spot of peanut (Arachis hypogaea) with chitinolytic bacteria. Phytopathology 2005, 95(10):1157-1165.
16. Kishore GK, Pande S, Podile AR Phylloplane bacteria increase seedling emergence, growth and yield of field-grown groundnut (Arachis hypogaea L.). Letters in Applied Microbiology 2005, 40(4):260-268.
17. Kuklinsky-Sobral J, Araujo WL, Mendes R, Geraldi IO, Pizzirani-Kleiner AA, Azevedo JL Isolation and characterization of soybean-associated bacteria and their potential for plant growth promotion. Environmental Microbiology 2004, 6(12):1244-1251.
18. Lindow SE, Brandl MT Microbiology of the phyllosphere. Applied and Environmental Microbiology 2003, 69(4):1875-1883.
19. Loh J, Pierson EA, Pierson LS, Stacey G, Chatterjee A Quorum sensing in plant-associated bacteria. Current Opinion in Plant Biology 2002, 5(4):285-290.
20. Madhaiyan M, Poonguzhali S, Kwon SW, Sa TM Methylobacterium phyllosphaerae sp. nov., a pink-pigmented, facultative methylotroph from the phyllosphere of rice. International Journal of Systematic and Evolutionary Microbiology 2009, 59(1):22-27.
21. Manefield M, Whiteley AS Acylated homoserine lactones in the environment: chameleons of bioactivity. Philosophical Transactions of the Royal Society B: Biological Sciences 2007, 362(1483):1235-1240.
22. McClean KH, Winson MK, Fish L, Taylor A, Chhabra SR, Camara M, et al. Quorum sensing and Chromobacterium violaceum: exploitation of violacein production and inhibition for the detection of N-acylhomoserine lactones. Microbiology 1997, 143(12):3703-3711.
23. McLean RJC, Whiteley M, Stickler DJ, Fuqua WC Evidence of autoinducer activity in naturally occurring biofilms. FEMS Microbiology Letters 1997, 154(2):259-263.
24. Morin D, Grasland B, Vallee-Rehel K, Dufau C, Haras D On-line high-performance liquid chromatography-mass spectrometric detection and quantification of N-acylhomoserine lactones, quorum sensing signal molecules, in the presence of biological matrices. Journal of Chromatography A 2003, 1002(1-2):79-92.
25. Quinones B, Dulla G, Lindow SE Quorum sensing regulates exopolysaccharide production, motility, and virulence in Pseudomonas syringae. Molecular Plant-Microbe Interactions 2005, 18(7):682-693.
26. Redford AJ, Bowers RM, Knight R, Linhart Y, Fierer N The ecology of the phyllosphere: geographic and phylogenetic variability in the distribution of bacteria on tree leaves. Environmental Microbiology 2010, 12(11):2885-2893.
27. Redford AJ, Fierer N Bacterial succession on the leaf surface: a novel system for studying successional dynamics. Microbial Ecology 2009, 58(1):189-198.
28. Schertzer JW, Boulette ML, Whiteley M More than a signal: non-signaling properties of quorum sensing molecules. Trends in Microbiology 2009, 17(5):189-195.
29. Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB, et al. Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Applied and Environmental Microbiology 2009, 75(23):7537-7541.
30. Sgroy V, Cassan F, Masciarelli O, Del Papa MF, Lagares A, Luna V Isolation and characterization of endophytic plant growth-promoting (PGPB) or stress homeostasis-regulating (PSHB) bacteria associated to the halophyte Prosopis strombulifera. Applied Microbiology and Biotechnology 2009, 85(2):371-381.
31. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Molecular Biology and Evolution 2011, 28(10):2731-2739.
32. Uroz S, Dessaux Y, Oger P Quorum sensing and quorum quenching: the yin and yang of bacterial communication. Chembiochem 2009, 10(2):205-216.
33. van der Wal A, Leveau JHJ Modelling sugar diffusion across plant leaf cuticles: the effect of free water on substrate availability to phyllosphere bacteria. Environmental Microbiology 2011, 13(3):792-797.
34. Walker EL, Bose JL, Stabb EV Photolyase confers resistance to UV light but does not contribute to the symbiotic benefit of bioluminescence in Vibrio fischeri ES114. Applied and Environmental Microbiology 2006, 72(10):6600-6606.
35. Waters CM, Bassler BL Quorum sensing: Cell-to-cell communication in bacteria. Annual Review of Cell and Development Biology 2005, 21(1):319-346.
36. Whipps JM, Hand P, Pink D, Bending GD Phyllosphere microbiology with special reference to diversity and plant genotype. Journal of Applied Microbiology 2008, 105(6):1744-1755.
37. Whitehead NA, Barnard AML, Slater H, Simpson NJL, Salmond GPC Quorum-sensing in Gram-negative bacteria. Fems Microbiology Reviews 2001, 25(4):365-404.
38. Xing DF, Cheng SA, Logan BE, Regan JM Isolation of the exoelectrogenic denitrifying bacterium Comamonas denitrificans based on dilution to extinction. Applied Microbiology and Biotechnology 2010, 85(5):1575-1587.
39. Zhan YH, Yan YL, Zhang W, Yu HY, Chen M, Lu W, et al. Genome sequence of Acinetobacter calcoaceticus PHEA-2, isolated from industry wastewater. Journal of Bacteriology 2011, 193(10):2672-2673.
40. Zhang ZG, Pierson LS A second quorum-sensing system regulates cell surface properties but not phenazine antibiotic production in Pseudomonas aureofaciens. Applied and Environmental Microbiology 2001, 67(9):4305-4315.