A novel dnaJ family gene, sfLA, encodes an inhibitor of flagellation in marine vibrio species

Journal of Bacteriology

Volumn 195, Issue 4, 2013, Pages 816-822

  Kitaoka, Maya ^a   Nishigaki, Takehiko ^a   Ihara, Kunio ^a   Nishioka, Noriko ^a   Kojima, Seiji ^a   Homma, Michio ^a  

^a NAGOYA UNIVERSITY   (Japan)

Author keywords

Biclustering; Constant row; Differential co expression; Gene expression

Indexed keywords

BACTERIAL PROTEIN; PEPTIDOGLYCAN; PROTEIN DNAJ; SFLA PROTEIN; UNCLASSIFIED DRUG;

ARTICLE; BACTERIAL STRAIN; CELL MOTILITY; CELL WALL; CONTROLLED STUDY; FLAGELLUM; GENE MUTATION; GENE SEQUENCE; NONHUMAN; PHENOTYPE; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN BINDING; PROTEIN DOMAIN; PROTEIN EXPRESSION; PROTEIN FUNCTION; STOP CODON; VIBRIO ALGINOLYTICUS;

AMINO ACID SEQUENCE; BACTERIAL PROTEINS; CONSERVED SEQUENCE; FLAGELLA; GENE EXPRESSION REGULATION, BACTERIAL; GENES, SUPPRESSOR; GENOME, BACTERIAL; MOLECULAR SEQUENCE DATA; MULTIGENE FAMILY; MUTATION; PHENOTYPE; PHYLOGENY; SPECIES SPECIFICITY; VIBRIO ALGINOLYTICUS;

EID: 84873539977     PISSN: 00219193     EISSN: 10985530     Source Type: Journal    
DOI: 10.1128/JB.01850-12     Document Type: Article

References (50)

1. Hlady WG, Klontz KC. 1996. The epidemiology of Vibrio infections in Florida, 1981-1993. J. Infect. Dis. 173:1176-1183.
2. Reilly GD, Reilly CA, Smith EG, Baker-Austin C. 2011. Vibrio alginolyticus- associated wound infection acquired in British waters, Guernsey, July 2011. Euro Surveill. 16(42):pii=19994. http://www.eurosurveillance.org/ViewArticle.aspx?ArticleId=19994.
3. Pezzlo M, Valter PJ, Burns MJ. 1979. Wound infection associated with Vibrio alginolyticus. Am. J. Clin. Pathol. 71:476-478.
4. Caccamese SM, Rastegar DA. 1999. Chronic diarrhea associated with Vibrio alginolyticus in an immunocompromised patient. Clin. Infect. Dis. 29:946-947.
5. Bardy SL, Ng SY, Jarrell KF. 2003. Prokaryotic motility structures. Microbiology 149:295-304.
6. Li N, Kojima S, Homma M. 2011. Sodium-driven motor of the polar flagellum in marine bacteria Vibrio. Genes Cells 16:985-999.
7. Macnab RM. 1999. The bacterial flagellum: reversible rotary propellor and type III export apparatus. J. Bacteriol. 181:7149-7153.
8. Manson MD, Armitage JP, Hoch JA, Macnab RM. 1998. Bacterial locomotion and signal transduction. J. Bacteriol. 180:1009-1022.
9. Richardson K. 1991. Roles of motility and flagellar structure in pathogenicity of Vibrio cholerae: analysis of motility mutants in three animal models. Infect. Immun. 59:2727-2736.
10. Silva AJ, Leitch GJ, Camilli A, Benitez JA. 2006. Contribution of hemagglutinin/ protease and motility to the pathogenesis of El Tor biotype cholera. Infect. Immun. 74:2072-2079.
11. Syed KA, Beyhan S, Correa N, Queen J, Liu J, Peng F, Satchell KJ, Yildiz F, Klose KE. 2009. The Vibrio cholerae flagellar regulatory hierarchy controls expression of virulence factors. J. Bacteriol. 191:6555-6570.
12. Eaton KA, Morgan DR, Krakowka S. 1989. Campylobacter pylori virulence factors in gnotobiotic piglets. Infect. Immun. 57:1119-1125.
13. Eaton KA, Morgan DR, Krakowka S. 1992. Motility as a factor in the colonisation of gnotobiotic piglets by Helicobacter pylori. J. Med. Microbiol. 37:123-127.
14. O'Toole PW, Lane MC, Porwollik S. 2000. Helicobacter pylori motility. Microbes Infect. 2:1207-1214.
15. Blair DF. 1995. How bacteria sense and swim. Annu. Rev. Microbiol. 49:489-522.
16. Merino S, Shaw JG, Tomas JM. 2006. Bacterial lateral flagella: an inducible flagella system. FEMS Microbiol. Lett. 263:127-135.
17. Shinoda S, Okamoto K. 1977. Formation and function of Vibrio parahaemolyticus lateral flagella. J. Bacteriol. 129:1266-1271.
18. Kawagishi I, Maekawa Y, Atsumi T, Homma M, Imae Y. 1995. Isolation of the polar and lateral flagellum-defective mutants in Vibrio alginolyticus and identification of their flagellar driving energy sources. J. Bacteriol. 177:5158-5160.
19. Shimada T, Sakazaki R, Suzuki K. 1985. Peritrichous flagella in mesophilic strains of Aeromonas. Jpn. J. Med. Sci. Biol. 38:141-145.
20. O'Rourke J, Lee A, Fox JG. 1992. An ultrastructural study of Helicobacter mustelae and evidence of a specific association with gastric mucosa. J. Med. Microbiol. 36:420-427.
21. McCarter LL. 2001. Polar flagellar motility of the Vibrionaceae. Microbiol. Mol. Biol. Rev. 65:445-462.
22. Correa NE, Peng F, Klose KE. 2005. Roles of the regulatory proteins FlhF and FlhG in the Vibrio cholerae flagellar transcription hierarchy. J. Bacteriol. 187:6324-6332.
23. Kusumoto A, Kamisaka K, Yakushi T, Terashima H, Shinohara A, Homma M. 2006. Regulation of polar flagellar number by the flhF and flhG genes in Vibrio alginolyticus. J. Biochem. 139:113-121.
24. Kusumoto A, Shinohara A, Terashima H, Kojima S, Yakushi T, Homma M. 2008. Collaboration of FlhF and FlhG to regulate polarflagella number and localization in Vibrio alginolyticus. Microbiology 154: 1390-1399.
25. Murray TS, Kazmierczak BI. 2006. FlhF is required for swimming and swarming in Pseudomonas aeruginosa. J. Bacteriol. 188:6995-7004.
26. Pandza S, Baetens M, Park CH, Au T, Keyhan M, Matin A. 2000. The G-protein FlhF has a role in polar flagellar placement and general stress response induction in Pseudomonas putida. Mol. Microbiol. 36:414-423.
27. Salvetti S, Ghelardi E, Celandroni F, Ceragioli M, Giannessi F, Senesi S. 2007. FlhF, a signal recognition particle-like GTPase, is involved in the regulation of flagellar arrangement, motility behaviour and protein secretion in Bacillus cereus. Microbiology 153:2541-2552.
28. Yosef I, Bochkareva ES, Adler J, Bibi E. 2010. Membrane protein biogenesis in Ffh- or FtsY-depleted Escherichia coli. PLoS One 5:e9130. doi: 10.1371/journal.pone.0009130.
29. Kusumoto A, Nishioka N, Kojima S, Homma M. 2009. Mutational analysis of the GTP-binding motif of FlhF which regulates the number and placement of the polar flagellum in Vibrio alginolyticus. J. Biochem. 146: 643-650.
30. Rowland SL, Fu X, Sayed MA, Zhang Y, Cook WR, Rothfield LI. 2000. Membrane redistribution of the Escherichia coli MinD protein induced by MinE. J. Bacteriol. 182:613-619.
31. Dasgupta N, Arora SK, Ramphal R. 2000. fleN, a gene that regulates flagellar number in Pseudomonas aeruginosa. J. Bacteriol. 182:357-364.
32. Kojima M, Nishioka N, Kusumoto A, Yagasaki J, Fukuda T, Homma M. 2011. Conversion of mono-polar to peritrichous flagellation in Vibrio alginolyticus. Microbiol. Immunol. 55:76-83.
33. Robinson JT, Thorvaldsdottir H, Winckler W, Guttman M, Lander ES, Getz G, Mesirov JP. 2011. Integrative Genomics viewer. Nat. Biotechnol. 29:24-26. doi:10.1038/nbt.1754.
34. Metcalf WW, Jiang W, Daniels LL, Kim SK, Haldimann A, Wanner BL. 1996. Conditionally replicative and conjugative plasmids carrying lacZα for cloning, mutagenesis, and allele replacement in bacteria. Plasmid 35: 1-13.
35. Kawagishi I, Okunishi I, Homma M, Imae Y. 1994. Removal of the periplasmic DNase before electroporation enhances efficiency of transformation in the marine bacterium Vibrio alginolyticus. Microbiology 140: 55-61.
36. +-driven polar flagellum of Vibrio alginolyticus. Biophysics 7:59-67.
37. Terashima H, Koike M, Kojima S, Homma M. 2010. The flagellar basal body-associated protein FlgT is essential for a novel ring structure in the sodium-driven Vibrio motor. J. Bacteriol. 192:5609-5615.
38. Finn RD, Mistry J, Tate J, Coggill P, Heger A, Pollington JE, Gavin OL, Gunasekaran P, Ceric G, Forslund K, Holm L, Sonnhammer EL, Eddy SR, Bateman A. 2010. The Pfam protein families database. Nucleic Acids Res. 38:D211-D222. doi:10.1093/nar/gkp985.
39. Smith SG, Mahon V, Lambert MA, Fagan RP. 2007. A molecular Swiss army knife: OmpA structure, function and expression. FEMS Microbiol. Lett. 273:1-11.
40. Kojima S, Shinohara A, Terashima H, Yakushi T, Sakuma M, Homma M, Namba K, Imada K. 2008. Insights into the stator assembly of the Vibrio flagellar motor from the crystal structure of MotY. Proc. Natl. Acad. Sci. U. S. A. 105:7696-7701.
41. Bartolome B, Jubete Y, Martinez E, de la Cruz F. 1991. Construction and properties of a family of pACYC184-derived cloning vectors compatible with pBR322 and its derivatives. Gene 102:75-78.
42. Namba K, Vonderviszt F. 1997. Molecular architecture of bacterial flagellum. Q. Rev. Biophys. 30:1-65.
43. Li H, Sourjik V. 2011. Assembly and stability of flagellar motor in Escherichia coli. Mol. Microbiol. 80:886-899.
44. Dereeper A, Audic S, Claverie JM, Blanc G. 2010. BLAST-EXPLORER helps you building datasets for phylogenetic analysis. BMC Evol. Biol. 10:8. doi:10.1186/1471-2148-10-8.
45. Dereeper A, Guignon V, Blanc G, Audic S, Buffet S, Chevenet F, Dufayard JF, Guindon S, Lefort V, Lescot M, Claverie JM, Gascuel O. 2008. Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Res. 36:W465-W469. doi:10.1093/nar/gkn180.
46. Genevaux P, Georgopoulos C, Kelley WL. 2007. The Hsp70 chaperone machines of Escherichia coli: a paradigm for the repartition of chaperone functions. Mol. Microbiol. 66:840-857.
47. Szabo A, Korszun R, Hartl FU, Flanagan J. 1996. A zinc finger-like domain of the molecular chaperone DnaJ is involved in binding to denatured protein substrates. EMBO J. 15:408-417.
48. Cyr DM, Langer T, Douglas MG. 1994. DnaJ-like proteins: molecular chaperones and specific regulators of Hsp70. Trends Biochem. Sci. 19: 176-181.
49. Shi W, Zhou Y, Wild J, Adler J, Gross CA. 1992. DnaK, DnaJ, and GrpE are required for flagellum synthesis in Escherichia coli. J. Bacteriol. 174: 6256-6263.
50. Okunishi I, Kawagishi I, Homma M. 1996. Cloning and characterization of motY, a gene coding for a component of the sodium-driven flagellar motor in Vibrio alginolyticus. J. Bacteriol. 178:2409-2415.