-
1
-
-
0035883897
-
Rheumatoid arthritis
-
10.1016/S0140-6736(01)06075-5, 11567728
-
Lee DM, Weinblatt ME. Rheumatoid arthritis. Lancet 2001, 358:903-911. 10.1016/S0140-6736(01)06075-5, 11567728.
-
(2001)
Lancet
, vol.358
, pp. 903-911
-
-
Lee, D.M.1
Weinblatt, M.E.2
-
2
-
-
33745612984
-
Synovial fibroblasts: key players in rheumatoid arthritis
-
Huber LC, Distler O, Tarner I, Gay RE, Gay S, Pap T. Synovial fibroblasts: key players in rheumatoid arthritis. Rheumatol (Oxford) 2006, 45:669-675.
-
(2006)
Rheumatol (Oxford)
, vol.45
, pp. 669-675
-
-
Huber, L.C.1
Distler, O.2
Tarner, I.3
Gay, R.E.4
Gay, S.5
Pap, T.6
-
3
-
-
73249125200
-
Fibroblast-like synoviocytes: key effector cells in rheumatoid arthritis
-
10.1111/j.0105-2896.2009.00859.x, 2913689, 20193003
-
Bartok B, Firestein GS. Fibroblast-like synoviocytes: key effector cells in rheumatoid arthritis. Immunol Rev 2010, 233:233-255. 10.1111/j.0105-2896.2009.00859.x, 2913689, 20193003.
-
(2010)
Immunol Rev
, vol.233
, pp. 233-255
-
-
Bartok, B.1
Firestein, G.S.2
-
4
-
-
77957196913
-
Rheumatoid arthritis
-
10.1016/S0140-6736(10)60826-4, 20870100
-
Scott DL, Wolfe F, Huizinga TW. Rheumatoid arthritis. Lancet 2010, 376:1094-1108. 10.1016/S0140-6736(10)60826-4, 20870100.
-
(2010)
Lancet
, vol.376
, pp. 1094-1108
-
-
Scott, D.L.1
Wolfe, F.2
Huizinga, T.W.3
-
5
-
-
77953251575
-
Innate immunity and rheumatoid arthritis
-
10.1016/j.rdc.2010.03.004, 2937347, 20510234
-
Gierut A, Perlman H, Pope RM. Innate immunity and rheumatoid arthritis. Rheum Dis Clin North Am 2010, 36:271-296. 10.1016/j.rdc.2010.03.004, 2937347, 20510234.
-
(2010)
Rheum Dis Clin North Am
, vol.36
, pp. 271-296
-
-
Gierut, A.1
Perlman, H.2
Pope, R.M.3
-
6
-
-
79955049746
-
Pathophysiology of rheumatoid arthritis
-
10.1097/BOR.0b013e32834518a3, 21427580
-
Cooles FA, Isaacs JD. Pathophysiology of rheumatoid arthritis. Curr Opin Rheumatol 2011, 23:233-240. 10.1097/BOR.0b013e32834518a3, 21427580.
-
(2011)
Curr Opin Rheumatol
, vol.23
, pp. 233-240
-
-
Cooles, F.A.1
Isaacs, J.D.2
-
7
-
-
0038011833
-
Evolving concepts of rheumatoid arthritis
-
10.1038/nature01661, 12748655
-
Firestein GS. Evolving concepts of rheumatoid arthritis. Nature 2003, 423:356-361. 10.1038/nature01661, 12748655.
-
(2003)
Nature
, vol.423
, pp. 356-361
-
-
Firestein, G.S.1
-
8
-
-
79955040826
-
New therapies in the management of rheumatoid arthritis
-
10.1097/BOR.0b013e3283454124, 21427579
-
Buch MH, Emery P. New therapies in the management of rheumatoid arthritis. Curr Opin Rheumatol 2011, 23:245-251. 10.1097/BOR.0b013e3283454124, 21427579.
-
(2011)
Curr Opin Rheumatol
, vol.23
, pp. 245-251
-
-
Buch, M.H.1
Emery, P.2
-
9
-
-
79959435199
-
Genome-wide genetic marker discovery and genotyping using next-generation sequencing
-
10.1038/nrg3012, 21681211
-
Davey JW, Hohenlohe PA, Etter PD, Boone JQ, Catchen JM, Blaxter ML. Genome-wide genetic marker discovery and genotyping using next-generation sequencing. Nat Rev Genet 2011, 12:499-510. 10.1038/nrg3012, 21681211.
-
(2011)
Nat Rev Genet
, vol.12
, pp. 499-510
-
-
Davey, J.W.1
Hohenlohe, P.A.2
Etter, P.D.3
Boone, J.Q.4
Catchen, J.M.5
Blaxter, M.L.6
-
10
-
-
50649089207
-
RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays
-
10.1101/gr.079558.108, 2527709, 18550803
-
Marioni JC, Mason CE, Mane SM, Stephens M, Gilad Y. RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays. Genome Res 2008, 18:1509-1517. 10.1101/gr.079558.108, 2527709, 18550803.
-
(2008)
Genome Res
, vol.18
, pp. 1509-1517
-
-
Marioni, J.C.1
Mason, C.E.2
Mane, S.M.3
Stephens, M.4
Gilad, Y.5
-
11
-
-
84863176523
-
RNA-seq reveals novel transcriptome of genes and their isoforms in human pulmonary microvascular endothelial cells treated with thrombin
-
10.1371/journal.pone.0031229, 3281071, 22359579
-
Zhang LQ, Cheranova D, Gibson M, Ding S, Heruth DP, Fang D, Ye SQ. RNA-seq reveals novel transcriptome of genes and their isoforms in human pulmonary microvascular endothelial cells treated with thrombin. PLoS One 2012, 7:e31229. 10.1371/journal.pone.0031229, 3281071, 22359579.
-
(2012)
PLoS One
, vol.7
-
-
Zhang, L.Q.1
Cheranova, D.2
Gibson, M.3
Ding, S.4
Heruth, D.P.5
Fang, D.6
Ye, S.Q.7
-
12
-
-
84873423701
-
RNA-seq analysis of transcriptomes in thrombin-treated and control human pulmonary microvascular endothelial cells
-
in press
-
Cheranova DGM, Chaudhary S, Zhang LQ, Heruth DP, Grigoryev DN, Ye SQ. RNA-seq analysis of transcriptomes in thrombin-treated and control human pulmonary microvascular endothelial cells. J Vis Exp 2012, in press.
-
(2012)
J Vis Exp
-
-
Cheranova, D.G.M.1
Chaudhary, S.2
Zhang, L.Q.3
Heruth, D.P.4
Grigoryev, D.N.5
Ye, S.Q.6
-
13
-
-
79251644774
-
Whole transcriptome sequencing reveals gene expression and splicing differences in brain regions affected by Alzheimer's disease
-
10.1371/journal.pone.0016266, 3025006, 21283692
-
Twine NA, Janitz K, Wilkins MR, Janitz M. Whole transcriptome sequencing reveals gene expression and splicing differences in brain regions affected by Alzheimer's disease. PLoS One 2011, 6:e16266. 10.1371/journal.pone.0016266, 3025006, 21283692.
-
(2011)
PLoS One
, vol.6
-
-
Twine, N.A.1
Janitz, K.2
Wilkins, M.R.3
Janitz, M.4
-
14
-
-
3242784052
-
A review of the MHC genetics of rheumatoid arthritis
-
10.1038/sj.gene.6364045, 14749714
-
Newton JL, Harney SM, Wordsworth BP, Brown MA. A review of the MHC genetics of rheumatoid arthritis. Genes Immun 2004, 5:151-157. 10.1038/sj.gene.6364045, 14749714.
-
(2004)
Genes Immun
, vol.5
, pp. 151-157
-
-
Newton, J.L.1
Harney, S.M.2
Wordsworth, B.P.3
Brown, M.A.4
-
15
-
-
0021341139
-
Extended haplotypes of chromosome 6 in adult rheumatoid arthritis
-
10.1002/art.1780270506, 6586181
-
Raum D, Awdeh Z, Glass D, Kammer G, Khan MA, Coblyn JS, Weinblatt M, Holdsworth D, Strong L, Rossen RD, et al. Extended haplotypes of chromosome 6 in adult rheumatoid arthritis. Arthritis Rheum 1984, 27:516-521. 10.1002/art.1780270506, 6586181.
-
(1984)
Arthritis Rheum
, vol.27
, pp. 516-521
-
-
Raum, D.1
Awdeh, Z.2
Glass, D.3
Kammer, G.4
Khan, M.A.5
Coblyn, J.S.6
Weinblatt, M.7
Holdsworth, D.8
Strong, L.9
Rossen, R.D.10
-
16
-
-
71249135693
-
Conditional analysis of the major histocompatibility complex in rheumatoid arthritis
-
Taylor KE, Criswell LA. Conditional analysis of the major histocompatibility complex in rheumatoid arthritis. BMC Proc 2009, 7(3):S36.
-
(2009)
BMC Proc
, vol.7
, Issue.3
-
-
Taylor, K.E.1
Criswell, L.A.2
-
17
-
-
36549003138
-
Two independent alleles at 6q23 associated with risk of rheumatoid arthritis
-
10.1038/ng.2007.27, 2652744, 17982456
-
Plenge RM, Cotsapas C, Davies L, Price AL, de Bakker PI, Maller J, Pe'er I, Burtt NP, Blumenstiel B, DeFelice M, et al. Two independent alleles at 6q23 associated with risk of rheumatoid arthritis. Nat Genet 2007, 39:1477-1482. 10.1038/ng.2007.27, 2652744, 17982456.
-
(2007)
Nat Genet
, vol.39
, pp. 1477-1482
-
-
Plenge, R.M.1
Cotsapas, C.2
Davies, L.3
Price, A.L.4
de Bakker, P.I.5
Maller, J.6
Pe'er, I.7
Burtt, N.P.8
Blumenstiel, B.9
DeFelice, M.10
-
18
-
-
84873440628
-
Intracellular chloride channel protein CLIC1 regulates macrophage functions via modulation of phagosomal acidification
-
in press
-
Jiang L, Salao K, Li H, Rybicka JM, Yates RM, Luo XW, Shi XX, Kuffner T, Tsai VW, Husaini Y, et al. Intracellular chloride channel protein CLIC1 regulates macrophage functions via modulation of phagosomal acidification. J Cell Sci 2012, in press.
-
(2012)
J Cell Sci
-
-
Jiang, L.1
Salao, K.2
Li, H.3
Rybicka, J.M.4
Yates, R.M.5
Luo, X.W.6
Shi, X.X.7
Kuffner, T.8
Tsai, V.W.9
Husaini, Y.10
-
19
-
-
0031898556
-
Prevalence and characterization of novel pANCA, antibodies to the high mobility group non-histone chromosomal proteins HMG1 and HMG2, in systemic rheumatic diseases
-
Uesugi H, Ozaki S, Sobajima J, Osakada F, Shirakawa H, Yoshida M, Nakao K. Prevalence and characterization of novel pANCA, antibodies to the high mobility group non-histone chromosomal proteins HMG1 and HMG2, in systemic rheumatic diseases. J Rheumatol 1998, 25:703-709.
-
(1998)
J Rheumatol
, vol.25
, pp. 703-709
-
-
Uesugi, H.1
Ozaki, S.2
Sobajima, J.3
Osakada, F.4
Shirakawa, H.5
Yoshida, M.6
Nakao, K.7
-
20
-
-
34547688939
-
Constitutive upregulation of the transforming growth factor-beta pathway in rheumatoid arthritis synovial fibroblasts
-
10.1186/ar2217, 2206335, 17594488
-
Pohlers D, Beyer A, Koczan D, Wilhelm T, Thiesen HJ, Kinne RW. Constitutive upregulation of the transforming growth factor-beta pathway in rheumatoid arthritis synovial fibroblasts. Arthritis Res Ther 2007, 9:R59. 10.1186/ar2217, 2206335, 17594488.
-
(2007)
Arthritis Res Ther
, vol.9
-
-
Pohlers, D.1
Beyer, A.2
Koczan, D.3
Wilhelm, T.4
Thiesen, H.J.5
Kinne, R.W.6
-
21
-
-
4444260122
-
Deletion of the gene encoding CD59a in mice increases disease severity in a murine model of rheumatoid arthritis
-
10.1002/art.20478, 15457473
-
Williams AS, Mizuno M, Richards PJ, Holt DS, Morgan BP. Deletion of the gene encoding CD59a in mice increases disease severity in a murine model of rheumatoid arthritis. Arthritis Rheum 2004, 50:3035-3044. 10.1002/art.20478, 15457473.
-
(2004)
Arthritis Rheum
, vol.50
, pp. 3035-3044
-
-
Williams, A.S.1
Mizuno, M.2
Richards, P.J.3
Holt, D.S.4
Morgan, B.P.5
-
22
-
-
2942511670
-
PubMatrix: a tool for multiplex literature mining
-
Becker KG, Hosack DA, Dennis G, Lempicki RA, Bright TJ, Cheadle C, Engel J. PubMatrix: a tool for multiplex literature mining. BMC Bioinforma 2003, 4:61.
-
(2003)
BMC Bioinforma
, vol.4
, pp. 61
-
-
Becker, K.G.1
Hosack, D.A.2
Dennis, G.3
Lempicki, R.A.4
Bright, T.J.5
Cheadle, C.6
Engel, J.7
-
23
-
-
58149477863
-
Scara5 is a ferritin receptor mediating non-transferrin iron delivery
-
10.1016/j.devcel.2008.12.002, 2652503, 19154717
-
Li JY, Paragas N, Ned RM, Qiu A, Viltard M, Leete T, Drexler IR, Chen X, Sanna-Cherchi S, Mohammed F, et al. Scara5 is a ferritin receptor mediating non-transferrin iron delivery. Dev Cell 2009, 16:35-46. 10.1016/j.devcel.2008.12.002, 2652503, 19154717.
-
(2009)
Dev Cell
, vol.16
, pp. 35-46
-
-
Li, J.Y.1
Paragas, N.2
Ned, R.M.3
Qiu, A.4
Viltard, M.5
Leete, T.6
Drexler, I.R.7
Chen, X.8
Sanna-Cherchi, S.9
Mohammed, F.10
-
24
-
-
84859495958
-
CutA divalent cation tolerance homolog (Escherichia coli) (CUTA) regulates beta-cleavage of beta-amyloid precursor protein (APP) through interacting with beta-site APP cleaving protein 1 (BACE1)
-
10.1074/jbc.M111.330209, 22351782
-
Zhao Y, Wang Y, Hu J, Zhang X, Zhang YW. CutA divalent cation tolerance homolog (Escherichia coli) (CUTA) regulates beta-cleavage of beta-amyloid precursor protein (APP) through interacting with beta-site APP cleaving protein 1 (BACE1). J Biol Chem 2012, 287:11141-11150. 10.1074/jbc.M111.330209, 22351782.
-
(2012)
J Biol Chem
, vol.287
, pp. 11141-11150
-
-
Zhao, Y.1
Wang, Y.2
Hu, J.3
Zhang, X.4
Zhang, Y.W.5
-
25
-
-
84859603522
-
Nuclear import of exogenous FGF1 requires the ER-protein LRRC59 and the importins Kpnalpha1 and Kpnbeta1
-
Zhen Y, Sorensen V, Skjerpen CS, Haugsten EM, Jin Y, Walchli S, Olsnes S, Wiedlocha A. Nuclear import of exogenous FGF1 requires the ER-protein LRRC59 and the importins Kpnalpha1 and Kpnbeta1. Traffic (Copenhagen, Denmark) 2012, 13:650-664.
-
(2012)
Traffic (Copenhagen, Denmark)
, vol.13
, pp. 650-664
-
-
Zhen, Y.1
Sorensen, V.2
Skjerpen, C.S.3
Haugsten, E.M.4
Jin, Y.5
Walchli, S.6
Olsnes, S.7
Wiedlocha, A.8
-
26
-
-
77955711839
-
Protein phosphatase-1 regulates Akt1 signal transduction pathway to control gene expression, cell survival and differentiation
-
10.1038/cdd.2010.16, 20186153
-
Xiao L, Gong LL, Yuan D, Deng M, Zeng XM, Chen LL, Zhang L, Yan Q, Liu JP, Hu XH, et al. Protein phosphatase-1 regulates Akt1 signal transduction pathway to control gene expression, cell survival and differentiation. Cell Death Differ 2010, 17:1448-1462. 10.1038/cdd.2010.16, 20186153.
-
(2010)
Cell Death Differ
, vol.17
, pp. 1448-1462
-
-
Xiao, L.1
Gong, L.L.2
Yuan, D.3
Deng, M.4
Zeng, X.M.5
Chen, L.L.6
Zhang, L.7
Yan, Q.8
Liu, J.P.9
Hu, X.H.10
-
27
-
-
84866714220
-
IL-26 is overexpressed in rheumatoid arthritis and induces proinflammatory cytokine production and Th17 cell generation
-
10.1371/journal.pbio.1001395, 3463509, 23055831
-
Corvaisier M, Delneste Y, Jeanvoine H, Preisser L, Blanchard S, Garo E, Hoppe E, Barré B, Audran M, Bouvard B, et al. IL-26 is overexpressed in rheumatoid arthritis and induces proinflammatory cytokine production and Th17 cell generation. PLoS Biol 2012, 10:e1001395. 10.1371/journal.pbio.1001395, 3463509, 23055831.
-
(2012)
PLoS Biol
, vol.10
-
-
Corvaisier, M.1
Delneste, Y.2
Jeanvoine, H.3
Preisser, L.4
Blanchard, S.5
Garo, E.6
Hoppe, E.7
Barré, B.8
Audran, M.9
Bouvard, B.10
-
28
-
-
55049089081
-
Genome-wide association scan identifies candidate polymorphisms associated with differential response to anti-TNF treatment in rheumatoid arthritis
-
Liu C, Batliwalla F, Li W, Lee A, Roubenoff R, Beckman E, Khalili H, Damle A, Kern M, Furie R, et al. Genome-wide association scan identifies candidate polymorphisms associated with differential response to anti-TNF treatment in rheumatoid arthritis. Mol med (Cambridge, Mass) 2008, 14:575-581.
-
(2008)
Mol med (Cambridge, Mass)
, vol.14
, pp. 575-581
-
-
Liu, C.1
Batliwalla, F.2
Li, W.3
Lee, A.4
Roubenoff, R.5
Beckman, E.6
Khalili, H.7
Damle, A.8
Kern, M.9
Furie, R.10
-
29
-
-
0034745026
-
Molecular mechanisms for alpha2-adrenoceptor-mediated regulation of synoviocyte populations
-
10.1254/jjp.85.214, 11325013
-
Mishima K, Otani H, Tanabe T, Kawasaki H, Oshiro A, Saito N, Ogawa R, Inagaki C. Molecular mechanisms for alpha2-adrenoceptor-mediated regulation of synoviocyte populations. Jpn J Pharmacol 2001, 85:214-226. 10.1254/jjp.85.214, 11325013.
-
(2001)
Jpn J Pharmacol
, vol.85
, pp. 214-226
-
-
Mishima, K.1
Otani, H.2
Tanabe, T.3
Kawasaki, H.4
Oshiro, A.5
Saito, N.6
Ogawa, R.7
Inagaki, C.8
-
30
-
-
77952924625
-
The axis of thrombospondin-1, transforming growth factor beta and connective tissue growth factor: an emerging therapeutic target in rheumatoid arthritis
-
10.2174/157016110791112296, 19485899
-
Rico MC, Rough JJ, Del Carpio-Cano FE, Kunapuli SP, DeLa Cadena RA. The axis of thrombospondin-1, transforming growth factor beta and connective tissue growth factor: an emerging therapeutic target in rheumatoid arthritis. Curr Vasc Pharmacol 2010, 8:338-343. 10.2174/157016110791112296, 19485899.
-
(2010)
Curr Vasc Pharmacol
, vol.8
, pp. 338-343
-
-
Rico, M.C.1
Rough, J.J.2
Del Carpio-Cano, F.E.3
Kunapuli, S.P.4
DeLa Cadena, R.A.5
-
31
-
-
84861782573
-
Thrombospondin-4 regulates fibrosis and remodeling of the myocardium in response to pressure overload
-
Frolova EG, Sopko N, Blech L, Popovic ZB, Li J, Vasanji A, Drumm C, Krukovets I, Jain MK, Penn MS, et al. Thrombospondin-4 regulates fibrosis and remodeling of the myocardium in response to pressure overload. FASEB journal: official publication of the Federation of American Societies for Experimental Biology 2012, 26:2363-2373.
-
(2012)
FASEB journal: official publication of the Federation of American Societies for Experimental Biology
, vol.26
, pp. 2363-2373
-
-
Frolova, E.G.1
Sopko, N.2
Blech, L.3
Popovic, Z.B.4
Li, J.5
Vasanji, A.6
Drumm, C.7
Krukovets, I.8
Jain, M.K.9
Penn, M.S.10
-
32
-
-
84866033089
-
Interactions of the complement system with molecules of extracellular matrix: relevance for joint diseases
-
10.1016/j.imbio.2012.07.013, 22964234
-
Happonen KE, Heinegard D, Saxne T, Blom AM. Interactions of the complement system with molecules of extracellular matrix: relevance for joint diseases. Immunobiology 2012, 217:1088-1096. 10.1016/j.imbio.2012.07.013, 22964234.
-
(2012)
Immunobiology
, vol.217
, pp. 1088-1096
-
-
Happonen, K.E.1
Heinegard, D.2
Saxne, T.3
Blom, A.M.4
-
33
-
-
0030805452
-
Plasminogen activation in synovial tissues: differences between normal, osteoarthritis, and rheumatoid arthritis joints
-
10.1136/ard.56.9.550, 1752434, 9370880
-
Busso N, Peclat V, So A, Sappino AP. Plasminogen activation in synovial tissues: differences between normal, osteoarthritis, and rheumatoid arthritis joints. Ann Rheum Dis 1997, 56:550-557. 10.1136/ard.56.9.550, 1752434, 9370880.
-
(1997)
Ann Rheum Dis
, vol.56
, pp. 550-557
-
-
Busso, N.1
Peclat, V.2
So, A.3
Sappino, A.P.4
-
34
-
-
77950537712
-
Expression of aquaporin 1 (AQP1) in human synovitis
-
Mobasheri A, Moskaluk CA, Marples D, Shakibaei M. Expression of aquaporin 1 (AQP1) in human synovitis. Ann Anat= Anatomischer Anzeiger: official organ of the Anatomische Gesellschaft 2010, 192:116-121.
-
(2010)
Ann Anat= Anatomischer Anzeiger: official organ of the Anatomische Gesellschaft
, vol.192
, pp. 116-121
-
-
Mobasheri, A.1
Moskaluk, C.A.2
Marples, D.3
Shakibaei, M.4
-
35
-
-
43049113102
-
Coagulation signalling following tissue injury: focus on the role of factor Xa
-
10.1016/j.biocel.2008.02.026, 18420447
-
Krupiczojc MA, Scotton CJ, Chambers RC. Coagulation signalling following tissue injury: focus on the role of factor Xa. Int J Biochem Cell Biol 2008, 40:1228-1237. 10.1016/j.biocel.2008.02.026, 18420447.
-
(2008)
Int J Biochem Cell Biol
, vol.40
, pp. 1228-1237
-
-
Krupiczojc, M.A.1
Scotton, C.J.2
Chambers, R.C.3
-
36
-
-
84857232095
-
Blockade of the hedgehog pathway inhibits osteophyte formation in arthritis
-
10.1136/ard.2010.148262, 22233602
-
Ruiz-Heiland G, Horn A, Zerr P, Hofstetter W, Baum W, Stock M, Distler JH, Nimmerjahn F, Schett G, Zwerina J. Blockade of the hedgehog pathway inhibits osteophyte formation in arthritis. Ann Rheum Dis 2012, 71:400-407. 10.1136/ard.2010.148262, 22233602.
-
(2012)
Ann Rheum Dis
, vol.71
, pp. 400-407
-
-
Ruiz-Heiland, G.1
Horn, A.2
Zerr, P.3
Hofstetter, W.4
Baum, W.5
Stock, M.6
Distler, J.H.7
Nimmerjahn, F.8
Schett, G.9
Zwerina, J.10
-
37
-
-
33744760210
-
Coexistent Marfan's syndrome and ankylosing spondylitis
-
Kiss C, Jonap I, Gergely P, Poor G. Coexistent Marfan's syndrome and ankylosing spondylitis. J Rheumatol 2006, 33:1199-1200.
-
(2006)
J Rheumatol
, vol.33
, pp. 1199-1200
-
-
Kiss, C.1
Jonap, I.2
Gergely, P.3
Poor, G.4
-
38
-
-
17244370023
-
Reduced p53 in peripheral blood mononuclear cells from patients with rheumatoid arthritis is associated with loss of radiation-induced apoptosis
-
10.1002/art.20931, 15818671
-
Maas K, Westfall M, Pietenpol J, Olsen NJ, Aune T. Reduced p53 in peripheral blood mononuclear cells from patients with rheumatoid arthritis is associated with loss of radiation-induced apoptosis. Arthritis Rheum 2005, 52:1047-1057. 10.1002/art.20931, 15818671.
-
(2005)
Arthritis Rheum
, vol.52
, pp. 1047-1057
-
-
Maas, K.1
Westfall, M.2
Pietenpol, J.3
Olsen, N.J.4
Aune, T.5
-
39
-
-
47649124124
-
A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome
-
10.1126/science.1160342, 18599741
-
Sultan M, Schulz MH, Richard H, Magen A, Klingenhoff A, Scherf M, Seifert M, Borodina T, Soldatov A, Parkhomchuk D, et al. A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome. Science 2008, 321:956-960. 10.1126/science.1160342, 18599741.
-
(2008)
Science
, vol.321
, pp. 956-960
-
-
Sultan, M.1
Schulz, M.H.2
Richard, H.3
Magen, A.4
Klingenhoff, A.5
Scherf, M.6
Seifert, M.7
Borodina, T.8
Soldatov, A.9
Parkhomchuk, D.10
-
40
-
-
46249106990
-
Mapping and quantifying mammalian transcriptomes by RNA-Seq
-
10.1038/nmeth.1226, 18516045
-
Mortazavi A, Williams BA, McCue K, Schaeffer L, Wold B. Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat Methods 2008, 5:621-628. 10.1038/nmeth.1226, 18516045.
-
(2008)
Nat Methods
, vol.5
, pp. 621-628
-
-
Mortazavi, A.1
Williams, B.A.2
McCue, K.3
Schaeffer, L.4
Wold, B.5
-
41
-
-
34548448091
-
Distinctive gene expression signatures in rheumatoid arthritis synovial tissue fibroblast cells: correlates with disease activity
-
10.1038/sj.gene.6364400, 17568789
-
Galligan CL, Baig E, Bykerk V, Keystone EC, Fish EN. Distinctive gene expression signatures in rheumatoid arthritis synovial tissue fibroblast cells: correlates with disease activity. Genes Immun 2007, 8:480-491. 10.1038/sj.gene.6364400, 17568789.
-
(2007)
Genes Immun
, vol.8
, pp. 480-491
-
-
Galligan, C.L.1
Baig, E.2
Bykerk, V.3
Keystone, E.C.4
Fish, E.N.5
-
42
-
-
84855358855
-
Transcriptome analysis reveals specific changes in osteoarthritis synovial fibroblasts
-
10.1136/annrheumdis-2011-200281, 22021863
-
Del Rey MJ, Usategui A, Izquierdo E, Canete JD, Blanco FJ, Criado G, Pablos JL. Transcriptome analysis reveals specific changes in osteoarthritis synovial fibroblasts. Ann Rheum Dis 2012, 71:275-280. 10.1136/annrheumdis-2011-200281, 22021863.
-
(2012)
Ann Rheum Dis
, vol.71
, pp. 275-280
-
-
Del Rey, M.J.1
Usategui, A.2
Izquierdo, E.3
Canete, J.D.4
Blanco, F.J.5
Criado, G.6
Pablos, J.L.7
-
43
-
-
78650045543
-
The transcriptional response of normal and rheumatoid arthritis synovial fibroblasts to hypoxia
-
10.1002/art.27750, 20848564
-
Del Rey MJ, Izquierdo E, Usategui A, Gonzalo E, Blanco FJ, Acquadro F, Pablos JL. The transcriptional response of normal and rheumatoid arthritis synovial fibroblasts to hypoxia. Arthritis Rheum 2010, 62:3584-3594. 10.1002/art.27750, 20848564.
-
(2010)
Arthritis Rheum
, vol.62
, pp. 3584-3594
-
-
Del Rey, M.J.1
Izquierdo, E.2
Usategui, A.3
Gonzalo, E.4
Blanco, F.J.5
Acquadro, F.6
Pablos, J.L.7
-
44
-
-
0036289709
-
Gene expression profile analysis of rheumatoid synovial fibroblast cultures revealing the overexpression of genes responsible for tumor-like growth of rheumatoid synovium
-
10.1016/S0006-291X(02)00608-3, 12074593
-
Watanabe N, Ando K, Yoshida S, Inuzuka S, Kobayashi M, Matsui N, Okamoto T. Gene expression profile analysis of rheumatoid synovial fibroblast cultures revealing the overexpression of genes responsible for tumor-like growth of rheumatoid synovium. Biochem Biophys Res Commun 2002, 294:1121-1129. 10.1016/S0006-291X(02)00608-3, 12074593.
-
(2002)
Biochem Biophys Res Commun
, vol.294
, pp. 1121-1129
-
-
Watanabe, N.1
Ando, K.2
Yoshida, S.3
Inuzuka, S.4
Kobayashi, M.5
Matsui, N.6
Okamoto, T.7
-
45
-
-
19944362145
-
DNA microarray allows molecular profiling of rheumatoid arthritis and identification of pathophysiological targets
-
10.1038/sj.gene.6364132, 15496955
-
Devauchelle V, Marion S, Cagnard N, Mistou S, Falgarone G, Breban M, Letourneur F, Pitaval A, Alibert O, Lucchesi C, et al. DNA microarray allows molecular profiling of rheumatoid arthritis and identification of pathophysiological targets. Genes Immun 2004, 5:597-608. 10.1038/sj.gene.6364132, 15496955.
-
(2004)
Genes Immun
, vol.5
, pp. 597-608
-
-
Devauchelle, V.1
Marion, S.2
Cagnard, N.3
Mistou, S.4
Falgarone, G.5
Breban, M.6
Letourneur, F.7
Pitaval, A.8
Alibert, O.9
Lucchesi, C.10
-
46
-
-
0038151908
-
Discovery of distinctive gene expression profiles in rheumatoid synovium using cDNA microarray technology: evidence for the existence of multiple pathways of tissue destruction and repair
-
10.1038/sj.gene.6363975, 12700593
-
Van Der Pouw Kraan TC, van Gaalen FA, Huizinga TW, Pieterman E, Breedveld FC, Verweij CL. Discovery of distinctive gene expression profiles in rheumatoid synovium using cDNA microarray technology: evidence for the existence of multiple pathways of tissue destruction and repair. Genes Immun 2003, 4:187-196. 10.1038/sj.gene.6363975, 12700593.
-
(2003)
Genes Immun
, vol.4
, pp. 187-196
-
-
Van Der Pouw Kraan, T.C.1
van Gaalen, F.A.2
Huizinga, T.W.3
Pieterman, E.4
Breedveld, F.C.5
Verweij, C.L.6
-
47
-
-
34247591787
-
Molecular profile of synovial fibroblasts in rheumatoid arthritis depends on the stage of proliferation
-
10.1186/ar427, 125298, 12223111
-
Masuda K, Masuda R, Neidhart M, Simmen BR, Michel BA, Muller-Ladner U, Gay RE, Gay S. Molecular profile of synovial fibroblasts in rheumatoid arthritis depends on the stage of proliferation. Arthritis Res 2002, 4:R8. 10.1186/ar427, 125298, 12223111.
-
(2002)
Arthritis Res
, vol.4
-
-
Masuda, K.1
Masuda, R.2
Neidhart, M.3
Simmen, B.R.4
Michel, B.A.5
Muller-Ladner, U.6
Gay, R.E.7
Gay, S.8
-
48
-
-
34047144393
-
Gene expression profiling of rheumatoid arthritis synovial cells treated with antirheumatic drugs
-
10.1177/1087057107299261, 17379860
-
Haupl T, Yahyawi M, Lubke C, Ringe J, Rohrlach T, Burmester GR, Sittinger M, Kaps C. Gene expression profiling of rheumatoid arthritis synovial cells treated with antirheumatic drugs. J Biomol Screen 2007, 12:328-340. 10.1177/1087057107299261, 17379860.
-
(2007)
J Biomol Screen
, vol.12
, pp. 328-340
-
-
Haupl, T.1
Yahyawi, M.2
Lubke, C.3
Ringe, J.4
Rohrlach, T.5
Burmester, G.R.6
Sittinger, M.7
Kaps, C.8
-
49
-
-
77955332298
-
The gene expression profile in the synovium as a predictor of the clinical response to infliximab treatment in rheumatoid arthritis
-
10.1371/journal.pone.0011310, 2892481, 20593016
-
Lindberg J, Wijbrandts CA, van Baarsen LG, Nader G, Klareskog L, Catrina A, Thurlings R, Vervoordeldonk M, Lundeberg J, Tak PP. The gene expression profile in the synovium as a predictor of the clinical response to infliximab treatment in rheumatoid arthritis. PLoS One 2010, 5:e11310. 10.1371/journal.pone.0011310, 2892481, 20593016.
-
(2010)
PLoS One
, vol.5
-
-
Lindberg, J.1
Wijbrandts, C.A.2
van Baarsen, L.G.3
Nader, G.4
Klareskog, L.5
Catrina, A.6
Thurlings, R.7
Vervoordeldonk, M.8
Lundeberg, J.9
Tak, P.P.10
-
50
-
-
0037242710
-
Serum MMP-3 and MMP-1 and progression of joint damage in early rheumatoid arthritis
-
Green MJ, Gough AK, Devlin J, Smith J, Astin P, Taylor D, Emery P. Serum MMP-3 and MMP-1 and progression of joint damage in early rheumatoid arthritis. Rheumatol (Oxford) 2003, 42:83-88.
-
(2003)
Rheumatol (Oxford)
, vol.42
, pp. 83-88
-
-
Green, M.J.1
Gough, A.K.2
Devlin, J.3
Smith, J.4
Astin, P.5
Taylor, D.6
Emery, P.7
-
51
-
-
84863237736
-
Decoding the differential biomarkers of Rheumatoid arthritis and Osteoarthritis: a functional genomics paradigm to design disease specific therapeutics
-
10.6026/97320630006153, 3092949, 21572882
-
Biswas S, Manikandan J, Pushparaj PN. Decoding the differential biomarkers of Rheumatoid arthritis and Osteoarthritis: a functional genomics paradigm to design disease specific therapeutics. Bioinformation 2011, 6:153-157. 10.6026/97320630006153, 3092949, 21572882.
-
(2011)
Bioinformation
, vol.6
, pp. 153-157
-
-
Biswas, S.1
Manikandan, J.2
Pushparaj, P.N.3
-
52
-
-
78649728802
-
Molecular signatures and new candidates to target the pathogenesis of rheumatoid arthritis
-
10.1152/physiolgenomics.00004.2010, 20858714
-
Ungethuem U, Haeupl T, Witt H, Koczan D, Krenn V, Huber H, von Helversen TM, Drungowski M, Seyfert C, Zacher J, et al. Molecular signatures and new candidates to target the pathogenesis of rheumatoid arthritis. Physiol Genomics 2010, 42A:267-282. 10.1152/physiolgenomics.00004.2010, 20858714.
-
(2010)
Physiol Genomics
, vol.42 A
, pp. 267-282
-
-
Ungethuem, U.1
Haeupl, T.2
Witt, H.3
Koczan, D.4
Krenn, V.5
Huber, H.6
von Helversen, T.M.7
Drungowski, M.8
Seyfert, C.9
Zacher, J.10
-
53
-
-
40949123747
-
TNF activates an IRF1-dependent autocrine loop leading to sustained expression of chemokines and STAT1-dependent type I interferon-response genes
-
Yarilina A, Park-Min KH, Antoniv T, Hu X, Ivashkiv LB. TNF activates an IRF1-dependent autocrine loop leading to sustained expression of chemokines and STAT1-dependent type I interferon-response genes. Nat Immunol 2008, 9:378-387.
-
(2008)
Nat Immunol
, vol.9
, pp. 378-387
-
-
Yarilina, A.1
Park-Min, K.H.2
Antoniv, T.3
Hu, X.4
Ivashkiv, L.B.5
-
54
-
-
65449136284
-
TopHat: discovering splice junctions with RNA-seq
-
10.1093/bioinformatics/btp120, 2672628, 19289445
-
Trapnell C, Pachter L, Salzberg SL. TopHat: discovering splice junctions with RNA-seq. Bioinformatics 2009, 25:1105-1111. 10.1093/bioinformatics/btp120, 2672628, 19289445.
-
(2009)
Bioinformatics
, vol.25
, pp. 1105-1111
-
-
Trapnell, C.1
Pachter, L.2
Salzberg, S.L.3
-
55
-
-
84859885816
-
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
-
Trapnell C, Roberts A, Goff L, Pertea G, Kim D, Kelley DR, Pimentel H, Salzberg SL, Rinn JL, Pachter L. Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks. Nat Protoc 2012, 7:562-578.
-
(2012)
Nat Protoc
, vol.7
, pp. 562-578
-
-
Trapnell, C.1
Roberts, A.2
Goff, L.3
Pertea, G.4
Kim, D.5
Kelley, D.R.6
Pimentel, H.7
Salzberg, S.L.8
Rinn, J.L.9
Pachter, L.10
-
56
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
10.1186/gb-2009-10-3-r25, 2690996, 19261174
-
Langmead B, Trapnell C, Pop M, Salzberg SL. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 2009, 10:R25. 10.1186/gb-2009-10-3-r25, 2690996, 19261174.
-
(2009)
Genome Biol
, vol.10
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
57
-
-
77952123055
-
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
-
10.1038/nbt.1621, 3146043, 20436464
-
Trapnell C, Williams BA, Pertea G, Mortazavi A, Kwan G, van Baren MJ, Salzberg SL, Wold BJ, Pachter L. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat Biotechnol 2010, 28:511-515. 10.1038/nbt.1621, 3146043, 20436464.
-
(2010)
Nat Biotechnol
, vol.28
, pp. 511-515
-
-
Trapnell, C.1
Williams, B.A.2
Pertea, G.3
Mortazavi, A.4
Kwan, G.5
van Baren, M.J.6
Salzberg, S.L.7
Wold, B.J.8
Pachter, L.9
-
58
-
-
77951770756
-
BEDTools: a flexible suite of utilities for comparing genomic features
-
10.1093/bioinformatics/btq033, 2832824, 20110278
-
Quinlan AR, Hall IM. BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics 2010, 26:841-842. 10.1093/bioinformatics/btq033, 2832824, 20110278.
-
(2010)
Bioinformatics
, vol.26
, pp. 841-842
-
-
Quinlan, A.R.1
Hall, I.M.2
-
59
-
-
68549104404
-
The Sequence Alignment/Map format and SAMtools
-
10.1093/bioinformatics/btp352, 2723002, 19505943
-
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R. The Sequence Alignment/Map format and SAMtools. Bioinformatics 2009, 25:2078-2079. 10.1093/bioinformatics/btp352, 2723002, 19505943.
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
Marth, G.7
Abecasis, G.8
Durbin, R.9
-
60
-
-
4644262045
-
Orthologous gene-expression profiling in multi-species models: search for candidate genes
-
10.1186/gb-2004-5-5-r34, 416470, 15128448
-
Grigoryev DN, Ma SF, Irizarry RA, Ye SQ, Quackenbush J, Garcia JG. Orthologous gene-expression profiling in multi-species models: search for candidate genes. Genome Biol 2004, 5:R34. 10.1186/gb-2004-5-5-r34, 416470, 15128448.
-
(2004)
Genome Biol
, vol.5
-
-
Grigoryev, D.N.1
Ma, S.F.2
Irizarry, R.A.3
Ye, S.Q.4
Quackenbush, J.5
Garcia, J.G.6
|