Capillary electrophoresis-SELEX selection of catalytic DNA aptamers for a small-molecule porphyrin target

Analytical Chemistry

Volumn 85, Issue 3, 2013, Pages 1525-1530

  Yang, Jing ^a   Bowser, Michael T ^a  

^a University of Minnesota   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

APTAMERS; CAPILLARY ELECTROPHORESIS-SELEX; DISSOCIATION CONSTANT; DNA APTAMERS; LIPOPOLYSACCHARIDES; MESOPORPHYRIN; METAL INSERTION; N-METHYL MESOPORPHYRIN; RATE ENHANCEMENT; SMALL MOLECULES;

CAPILLARY ELECTROPHORESIS; DISSOCIATION; PORPHYRINS; PROTEINS;

MOLECULES;

APTAMER; PORPHYRIN;

ARTICLE; CAPILLARY ELECTROPHORESIS; COMBINATORIAL CHEMISTRY; ENZYME ACTIVE SITE; GENE TARGETING; GENETICS; METABOLISM; METHODOLOGY; PHYSIOLOGY; RANDOMIZATION;

APTAMERS, NUCLEOTIDE; CATALYTIC DOMAIN; ELECTROPHORESIS, CAPILLARY; GENE TARGETING; PORPHYRINS; RANDOM ALLOCATION; SELEX APTAMER TECHNIQUE;

EID: 84873397725     PISSN: 00032700     EISSN: 15206882     Source Type: Journal    
DOI: 10.1021/ac302721j     Document Type: Article

References (41)

1. Famulok, M.; Mayer, G.; Blind, M. Acc. Chem. Res. 2000, 33, 591-599
2. Bock, L. C.; Griffin, L. C.; Latham, J. A.; Vermaas, E. H.; Toole, J. J. Nature 1992, 355, 564-566
3. Wiegand, T. W.; Williams, P. B.; Dreskin, S. C.; Jouvin, M. H.; Kinet, J. P.; Tasset, D. J. Immunol. 1996, 157, 221-230
4. Ruckman, J.; Green, L. S.; Beeson, J.; Waugh, S.; Gillette, W. L.; Henninger, D. D.; Claesson-Welsh, L.; Janjic, N. J. Biol. Chem. 1998, 273, 20556-20567
5. Nieuwlandt, D.; Wecker, M.; Gold, L. Biochemistry 1995, 34, 5651-5659
6. Faulhammer, D.; Eschgfaller, B.; Stark, S.; Burgstaller, P.; Englberger, W.; Erfurth, J.; Kleinjung, F.; Rupp, J.; Vulcu, S. D.; Schroder, W.; Vonhoff, S.; Nawrath, H.; Gillen, C.; Klussmann, S. RNA 2004, 10, 516-527
7. Famulok, M. Curr. Opin. Struct. Biol. 1999, 9, 324-329
8. Ciesiolka, J.; Yarus, M. RNA 1996, 2, 785-793
9. Hofmann, H. P.; Limmer, S.; Hornung, V.; Sprinzl, M. RNA 1997, 3, 1289-1300
10. Ringquist, S.; Jones, T.; Snyder, E. E.; Gibson, T.; Boni, I.; Gold, L. Biochemistry 1995, 34, 3640-3648
11. Shangguan, D.; Li, Y.; Tang, Z.; Cao, Z.; Chen, H.; Mallikaratchy, P.; Sefah, K.; Yang, C.; Tan, W. Proc. Natl. Acad. Sci. U.S.A. 2006, 103, 11838-11843
12. Jayasena, S. D. Clin. Chem. 1999, 45, 1628-1650
13. Deng, Q.; German, I.; Buchanan, D.; Kennedy, R. T. Anal. Chem. 2001, 73, 5415-5421
14. German, I.; Buchanan, D. D.; Kennedy, R. T. Anal. Chem. 1998, 70, 4540-4545
15. Cho, E. J.; Collett, J. R.; Szafranska, A. E.; Ellington, A. D. Anal. Chim. Acta 2006, 564, 82-90
16. Siddiqui, M. A. A.; Keating, G. M. Drugs 2005, 65, 1571-1577
17. Tuerk, C.; Gold, L. Science 1990, 249, 505-510
18. Ellington, A. D.; Szostak, J. W. Nature 1990, 346, 818-822
19. Mannironi, C.; DiNardo, A.; Fruscoloni, P.; TocchiniValentini, G. P. Biochemistry 1997, 36, 9726-9734
20. Hesselberth, J. R.; Miller, D.; Robertus, J.; Ellington, A. D. J. Biol. Chem. 2000, 275, 4937-4942
21. Mendonsa, S. D.; Bowser, M. T. J. Am. Chem. Soc. 2004, 126, 20-21
22. Mendonsa, S. D.; Bowser, M. T. Anal. Chem. 2004, 76, 5387-5392
23. Mosing, R. K.; Mendonsa, S. D.; Bowser, M. T. Anal. Chem. 2005, 77, 6107-6112
24. Berezovski, M.; Drabovich, A.; Krylova, S. M.; Musheev, M.; Okhonin, V.; Petrov, A.; Krylov, S. N. J. Am. Chem. Soc. 2005, 127, 3165-3171
25. Drabovich, A.; Berezovski, M.; Krylov, S. N. J. Am. Chem. Soc. 2005, 127, 11224-11225
26. Mallikaratchy, P.; Stahelin, R. V.; Cao, Z.; Cho, W. H.; Tan, W. Chem. Commun. 2006, 3229-3231
27. Mendonsa, S. D.; Bowser, M. T. J. Am. Chem. Soc. 2005, 127, 9382-9383
28. Bowser, M. T. Analyst 2005, 130, 128-130
29. Cochran, A. G.; Schultz, P. G. Science 1990, 249, 781-783
30. Conn, M. M.; Prudent, J. R.; Schultz, P. G. J. Am. Chem. Soc. 1996, 118, 7012-7013
31. Kawazoe, N.; Teramoto, N.; Ichinari, H.; Imanishi, Y.; Ito, Y. Biomacromolecules 2001, 2, 681-686
32. Li, Y.; Geyer, C. R.; Sen, D. Biochemistry 1996, 35, 6911-6922
33. Li, Y.; Sen, D. Nat. Struct. Biol. 1996, 3, 743-747
34. Li, Y.; Sen, D. Biochemistry 1997, 36, 5589-5599
35. Oh, S. S.; Plakos, K.; Lou, X.; Xiao, Y.; Soh, H. T. Proc. Natl. Acad. Sci. U.S.A. 2010, 107, 14053-14058
36. Arthanari, H.; Basu, S.; Kawano, T. L.; Bolton, P. H. Nucleic Acids Res. 1998, 26, 3724-3728
37. Falk, J. E. Porphyrins and Metalloporphyrins: Their General, Physical and Coordination Chemistry, and Laboratory Methods; Elsevier: New York, 1964.
38. Hu, D.; Huang, Z. Z.; Pu, F.; Ren, J. S.; Qu, X. G. Chem.-Eur. J. 2011, 17, 1635-1641
39. Wilson, D. S.; Szostak, J. W. Annu. Rev. Biochem. 1999, 68, 611-647
40. Ren, J.; Chaires, J. B. Biochemistry 1999, 38, 16067-16075
41. Sugimoto, N.; Toda, T.; Ohmichi, T. Chem. Commun. 1998, 1533-1534