Phylogenetic analysis and subgenotypic distribution of the hepatitis B virus in Recife, Brazil

Infection, Genetics and Evolution

Volumn 14, Issue 1, 2013, Pages 195-199

  Moura, Izolda Fernandes ^a   Lopes, Edmundo Pessoa ^a   Alvarado Mora, Mónica Viviana ^b   Pinho, João Renato ^b   Carrilho, Flair José ^b  

^a FEDERAL UNIVERSITY OF PERNAMBUCO   (Brazil)

^b UNIVERSITY OF SÃO PAULO   (Brazil)

Author keywords

Bayesian analysis; HBV genotype; HBV subgenotype; Hepatitis B virus; Phylogenetic analysis

Indexed keywords

DNA FRAGMENT; DNA POLYMERASE; HEPATITIS B SURFACE ANTIGEN;

ADULT; ARTICLE; BAYES THEOREM; BRAZIL; CROSS-SECTIONAL STUDY; DNA STRAND; FEMALE; GENE AMPLIFICATION; GENE CLUSTER; GENE SEQUENCE; GENETIC VARIABILITY; GENOTYPE; GEOGRAPHIC DISTRIBUTION; HEPATITIS B; HEPATITIS B VIRUS; HUMAN; HUMAN CELL; MAJOR CLINICAL STUDY; MALE; MONTE CARLO METHOD; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; PHYLOGENY; PRIORITY JOURNAL; PROBABILITY; SEQUENCE ALIGNMENT; UNINDEXED SEQUENCE; VIRUS GENOME; VIRUS STRAIN;

EID: 84873303647     PISSN: 15671348     EISSN: 15677257     Source Type: Journal    
DOI: 10.1016/j.meegid.2012.11.022     Document Type: Article

References (33)

1. Alcalde R., Melo F.L., Nishiya A., Ferreira S.C., Langhi M.D., Fernandes S.S., Marcondes L.A., Duarte A.J.S., Casseb J. Distribution of hepatitis B virus genotypes and viral load levels in Brazilian chronically infected patients in São Paulo city. Rev. Inst. Med. Trop. S. Paulo 2009, 51:269-272.
2. Almeida D., Tavares-Neto J., Vitvitski L., Almeida A., Mello C., Santana D., Tatsch F., Paraná R. Serological markers of hepatitis A, B and C viruses in rural communities of the Semiarid Brazilian Northeast. B.J.I.D. 2006, 10:317-321.
3. Alvarado-Mora M.V., Botelho L., Gomes-Gouvêa M.S., de Souza V.F., Nascimento M.C., Pannuti C.S., Carrilho F.J., Pinho J.R. Detection of hepatitis B virus subgenotype A1 in the Quilombo community from Maranhão. Brazil. Virol. J. 2011, 8:415.
4. Alvarado-Mora M.V., Romano C.M., Gomes-Gouvêa M.S., Gutierrez M.F., Botelho L., Carrilho F.J., Pinho J.R. Molecular characterization of the Hepatitis B virus genotypes in Colombia: a Bayesian inference on the genotype F. Infect. Gen. Evol. 2011, 11:103-108.
5. Alvarado-Mora M.V., Romano C.M., Gomes-Gouvêa M.S., Gutierrez M.F., Carrilho F.J., Pinho J.R. Molecular epidemiology and genetic diversity of hepatitis B virus genotype E in an isolated Afro-Colombian community. J. Gen. Virol. 2010, 91:501-508.
6. Andermach I.E., Nolte C., Pape J.W., Muller C.P. Slave trade and hepatitis B virus genotypes and subgenotypes in Haiti and Africa. Emerg. Infect. Dis. 2009, 15:1222-1228.
7. Becker C.E., Mattos A.A., Bogo M.R., Branco F., Sitnik R., Kretzmann N.A. Genotyping of hepatitis B virus in a cohort of patients evaluated in a hospital of Porto Alegre, South of Brazil. Arq. Gastroenterol. 2010, 47:13-17.
8. Bertolini, D.A., Gomes-Gouvêa, M.S., Carvalho-Mello, I.M.V.G., Saraceni, C.P., Sitinik, R., Grazziotin, F.G., Laurino, J.P., Fagundes, N.J.R., Carrilho, F.J., Pinho, J.R., 2012. Hepatiris B virus genotypes from European origin explains the high endemicity found in some areas from southern Brazil. Infect. Genet. Evol.
9. Cao G.W. Clinical relevance and public health significance of hepatitis B virus genomic variations. World J. Gastroenterol. 2009, 15:5761-5769.
10. Carrilho F.J., Moraes C.R., Pinho J.R., Mello I.M., Bertolini D.A., Lemos M.F., Moreira R.C., Bassit L.C., Cardoso R.A., Ribeiro-dos-Santo G., Da Silva L.C. Hepatitis B virus infection in hemodialysis centers from Santa Catarina state, Southern Brazil. Predictive risk factors for infection and molecular epidemiology. BMC Public Health 2004, 4:13.
11. Chomczynski P., Sacchi N. Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal. Biochem. 1987, 162:156-159.
12. Devesa M., Loureiro C.L., Rivas Y., Monsalve F., Cardona N., Duarte M.C., Poblete F., Gutierrez M.F., Botto C., Pujol F.H. Subgenotype diversity of hepatitis B virus American genotype F in Amerindians from Venezuela and general population of Colômbia. J. Med. Virol. 2008, 80:20-26.
13. Dias á.L.B., Oliveira C.M.C., Castilho M.C., Silva M.S.P., Braga W.S.M. Molecular characterization of the hepatitis B virus in autochthonous and endogenous populations in the Western Brazilian Amazon. Rev. Soc. Bras. Med. Trop. 2012, 45:9-12.
14. Drummond A.J., Rambaut A. BEAST: Bayesian evolutionary analysis by sample trees. BMC Evol. Biol. 2007, 7:214.
15. Kim B.K., Revill P.A., Ahn S.H. HBV genotypes: relevance to natural history, pathogenesis and treatment of chronic hepatitis B. Antivir. Ther. 2011, 16:1169-1186.
16. Kimbi G.C., Kramvis A., Kew M.C. Distinctive sequence characteristics of subgenotype A1 isolates of hepatitis B virus from South Africa. J. Gen. Virol. 2004, 85:1211-1220.
17. Kramvis A., Kew M.C. Epidemiology of hepatitis B virus in Africa, its genotypes and clinical associations of genotypes. Hepatol. Res. 2007, 37:S9-19.
18. Kwok S., Higuchi R. Avoiding false positives with PCR. Nature 1989, 339:237-238.
19. Matos M.A.D., Reis N.R.S., Kozlowski A.G., Teles A.S., Motta-Castro A.R.C., Mello F.C.A., Gomes A.S., Matins R.M.B. Epidemiological study of hepatitis A, B and C in the largest Afro-Brazilian isolated community. Roy. Soc. Trop. Med. Hyg. 2009, 103:899-905.
20. Mello F.C.A., Fernandes C.A., Gomes S.A. Antiviral therapy against chronic hepatitis B in Brazil: high rates of lamivudine resistance mutations and correlation with HBV genotypes. Mem. Inst. Oswaldo Cruz. 2012, 107:317-325.
21. Mello F.C.A., Souto F.J.D., Nabuco L.C., Villela-Nogueira C.A., Coelho H.S.M., Franz H.C.F., Saraiva J.C.P., Virgolino H.A., Motta-Castro A.R.C., Melo M.M.M., Martins R.M.B., Gomes A.S. Hepatitis B virus genotypes circulating in Brazil: molecular characterization of genotype F isolates. BMC Microbiol. 2007, 7:103.
22. Motta-Castro A.R.C., Martins R.M.B., Araujo N.M., Niel C., Facholi G.B., Lago B.V., Mello F.C.A., Gomes S.A. Molecular epidemiology of hepatitis B virus in an isolated Afro-Brazilian community. Arch. Virol. 2008, 153:2197-2205.
23. Palumbo E., Scotto G., Falco G., Cibelli D.C., Angarano G. Prevalence of HBV genotypes in South American immigrants affected by HBV-related chronic active hepatitis. Braz. J. Infect. Dis. 2007, 11:311-313.
24. Posada D., Crandall K.A. MODELTEST: testing the model of DNA substitution. Bioinformatics 1998, 14:817-818.
25. Raimondi S., Maisonneuve P., Bruno S., Mondelli M.U. Is response to antiviral treatment influenced by hepatitis B virus genotype?. J. Hepatol. 2010, 52:441-449.
26. Ribeiro N.R.C., Campos G.S., Angelo A.L.D., Braga E.L., Santana N., Gomes M.M.S., Pinho J.R., De Carvalho W.A., Lyra L.G.C., Lyra A.C. Distribution of hepatitis B virus genotypes among patients with chronic infection. Liver Inter. 2006, 26:636-642.
27. Santos A.O., Alvarado-Mora M.V., Botelho L., Vieira D.S., Pinho J.R., Carrilho F.J., Honda E.R., Salcedo J.M. Characterization of hepatitis B virus (HBV) genotypes in patients from Rondonia. Brazil. Virol. J. 2010, 7:315.
28. Scheiblauer H., El-Nageh M., Diaz S., Nick S., Zeichhardt H., Grunert H.-P., Prince A. Performance evaluation of 70 hepatitis B virus (HBV) surface antigen (HBsAg) assays from around the world by a geographically diverse panel with an array of HBV genotypes and HBsAg subtypes. Vox Sang. 2010, 98:403-414.
29. Tanwar S., Dusheiko G. Is there any value to hepatitis B virus genotype analysis?. Curr. Gastroenterol. Rep. 2012, 14:37-46.
30. Teles S.A., Martins R.M.B., Vanderborght B., Stuyver L., Gaspar A.M., Yoshida C.F.T. Hepatitis B virus: genotypes and subtypes in Brazilian hemodialysis patients. Arttif. Organs. 1999, 23:1074-1078.
31. Tonetto P.A., Gonçalves N.S.L., Fais V.C., Vigani A.G., Gonçalves E.S.L., Feltrin A., Gonçalves F.L. Hepatitis B virus: molecular genotypes and HBeAg serological status among HBV-infected patients in the Southeast of Brazil.BMC. Infect. Dis. 2009, 9:149.
32. Valente F., Lago B.V., Castro C.A.V., Almeida A.J., Gomes A.S., Soares C.C. Epidemiology and molecular characterization of hepatitis B virus in Luanda, Angola. Mem. Inst. Oswaldo Cruz. 2010, 105:970-977.
33. Yu H., Yuan Q., Ge S.-X., Wang H.-Y., Zhang Y.-L., Chen Q.-R., Zhang J., Chen P.-J., Xia N.-S. Molecular and phylogenetic analyses suggest an additional hepatitis B virus genotype " I" PLoS ONE 2010, 5:1-9.