-
1
-
-
0002154022
-
A new method for non-parametric multivariate analysis of variance
-
Anderson MJ (2001) A new method for non-parametric multivariate analysis of variance. Austral Ecol 26: 32-46.
-
(2001)
Austral Ecol
, vol.26
, pp. 32-46
-
-
Anderson, M.J.1
-
2
-
-
0026364241
-
The production of dissolved organic matter by phytoplankton and its importance to bacteria: patterns across marine and freshwater systems
-
Baines SB & Pace ML (1991) The production of dissolved organic matter by phytoplankton and its importance to bacteria: patterns across marine and freshwater systems. Limnol Oceanogr 36: 1078-1090.
-
(1991)
Limnol Oceanogr
, vol.36
, pp. 1078-1090
-
-
Baines, S.B.1
Pace, M.L.2
-
3
-
-
0031834070
-
Seasonal variations of phytoplankton photosynthate partitioning in two lakes of different trophic level
-
Charpin MF, Maurin N, Amblard C & Devaux J (1998) Seasonal variations of phytoplankton photosynthate partitioning in two lakes of different trophic level. J Plankton Res 20: 901-921.
-
(1998)
J Plankton Res
, vol.20
, pp. 901-921
-
-
Charpin, M.F.1
Maurin, N.2
Amblard, C.3
Devaux, J.4
-
5
-
-
7344263011
-
Photosynthetically produced dissolved organic-carbon - an important carbon source for planktonic bacteria
-
Cole JJ, Likens GE & Strayer DL (1982) Photosynthetically produced dissolved organic-carbon - an important carbon source for planktonic bacteria. Limnol Oceanogr 27: 1080-1090.
-
(1982)
Limnol Oceanogr
, vol.27
, pp. 1080-1090
-
-
Cole, J.J.1
Likens, G.E.2
Strayer, D.L.3
-
6
-
-
34547593764
-
REPK: an analytical web server to select restriction endonucleases for terminal restriction fragment length polymorphism analysis
-
Collins RE & Rocap G (2007) REPK: an analytical web server to select restriction endonucleases for terminal restriction fragment length polymorphism analysis. Nucleic Acids Res 35: W58-W62.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Collins, R.E.1
Rocap, G.2
-
7
-
-
0242668350
-
Bacterioplankton community shifts in an arctic lake correlate with seasonal changes in organic matter source
-
Crump BC, Kling GW, Bahr M & Hobbie JE (2003) Bacterioplankton community shifts in an arctic lake correlate with seasonal changes in organic matter source. Appl Environ Microbiol 69: 2253-2268.
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 2253-2268
-
-
Crump, B.C.1
Kling, G.W.2
Bahr, M.3
Hobbie, J.E.4
-
8
-
-
84873189577
-
-
Geneious v4.6, Available at:
-
Drummond AJ, Ashton B, Buxton S et al. (2010) Geneious v4.6, Available at: http://www.geneious.com.
-
(2010)
-
-
Drummond, A.J.1
Ashton, B.2
Buxton, S.3
-
9
-
-
84873128794
-
-
PHYLIP (Phylogeny Inference Package) version 3.6. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle.
-
Felsenstein J (2005) PHYLIP (Phylogeny Inference Package) version 3.6. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle.
-
(2005)
-
-
Felsenstein, J.1
-
10
-
-
0037270927
-
Influence of drying-rewetting frequency on soil bacterial community structure
-
Fierer N, Schimel JP & Holden PA (2003) Influence of drying-rewetting frequency on soil bacterial community structure. Microb Ecol 45: 63-71.
-
(2003)
Microb Ecol
, vol.45
, pp. 63-71
-
-
Fierer, N.1
Schimel, J.P.2
Holden, P.A.3
-
11
-
-
84922758236
-
The ecological significance of extracellular products of phytoplankton photosynthesis
-
Fogg GE (1983) The ecological significance of extracellular products of phytoplankton photosynthesis. Bot Mar 26: 3-14.
-
(1983)
Bot Mar
, vol.26
, pp. 3-14
-
-
Fogg, G.E.1
-
12
-
-
70349577128
-
Phycisphaera mikurensis gen. nov., sp nov., isolated from a marine alga, and proposal of Phycisphaeraceae fam. nov., Phycisphaerales ord. nov and Phycisphaerae classis nov in the phylum Planctomycetes
-
Fukunaga Y, Kurahashi M, Sakiyama Y, Ohuchi M, Yokota A & Harayama S (2009) Phycisphaera mikurensis gen. nov., sp nov., isolated from a marine alga, and proposal of Phycisphaeraceae fam. nov., Phycisphaerales ord. nov and Phycisphaerae classis nov in the phylum Planctomycetes. J Gen Appl Microbiol 55: 267-275.
-
(2009)
J Gen Appl Microbiol
, vol.55
, pp. 267-275
-
-
Fukunaga, Y.1
Kurahashi, M.2
Sakiyama, Y.3
Ohuchi, M.4
Yokota, A.5
Harayama, S.6
-
13
-
-
38249033181
-
Photosynthetic products and nutrient availability in phytoplankton population from Gokasho Bay, Japan
-
Hama T & Honjo T (1987) Photosynthetic products and nutrient availability in phytoplankton population from Gokasho Bay, Japan. J Exp Mar Biol Ecol 112: 251-266.
-
(1987)
J Exp Mar Biol Ecol
, vol.112
, pp. 251-266
-
-
Hama, T.1
Honjo, T.2
-
14
-
-
73449128271
-
Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data
-
Hamady M, Lozupone C & Knight R (2010) Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data. ISME J 4: 17-27.
-
(2010)
ISME J
, vol.4
, pp. 17-27
-
-
Hamady, M.1
Lozupone, C.2
Knight, R.3
-
15
-
-
84980119677
-
Excretion of some organic compounds by marine phytoplankton
-
Hellebust JA (1965) Excretion of some organic compounds by marine phytoplankton. Limnol Oceanogr 10: 192-206.
-
(1965)
Limnol Oceanogr
, vol.10
, pp. 192-206
-
-
Hellebust, J.A.1
-
16
-
-
30744470609
-
Application of phylogenetic networks in evolutionary studies
-
Hudson DH & Bryant D (2006) Application of phylogenetic networks in evolutionary studies. Mol Biol Evol 23: 254-267.
-
(2006)
Mol Biol Evol
, vol.23
, pp. 254-267
-
-
Hudson, D.H.1
Bryant, D.2
-
17
-
-
44849136535
-
Influence of algal community structure on denitrification rates in periphyton cultivated on artificial substrata
-
Ishida CK, Arnon S, Peterson CG, Kelly JJ & Gray KA (2008) Influence of algal community structure on denitrification rates in periphyton cultivated on artificial substrata. Microb Ecol 56: 140-152.
-
(2008)
Microb Ecol
, vol.56
, pp. 140-152
-
-
Ishida, C.K.1
Arnon, S.2
Peterson, C.G.3
Kelly, J.J.4
Gray, K.A.5
-
18
-
-
69949092691
-
Evidence for structuring of bacterial community composition by organic carbon source in temperate lakes
-
Jones SE, Newton RJ & McMahon KD (2009) Evidence for structuring of bacterial community composition by organic carbon source in temperate lakes. Environ Microbiol 11: 2463-2472.
-
(2009)
Environ Microbiol
, vol.11
, pp. 2463-2472
-
-
Jones, S.E.1
Newton, R.J.2
McMahon, K.D.3
-
19
-
-
33747046964
-
Variation in dissolved organic matter controls bacterial production and community composition
-
Judd KE, Crump BC & Kling GW (2006) Variation in dissolved organic matter controls bacterial production and community composition. Ecology 87: 2068-2079.
-
(2006)
Ecology
, vol.87
, pp. 2068-2079
-
-
Judd, K.E.1
Crump, B.C.2
Kling, G.W.3
-
20
-
-
34248172002
-
Synchrony in aquatic microbial community dynamics
-
Kent AD, Yannarell AC, Rusak JA, Triplett EW & McMahon KD (2007) Synchrony in aquatic microbial community dynamics. ISME J 1: 38-47.
-
(2007)
ISME J
, vol.1
, pp. 38-47
-
-
Kent, A.D.1
Yannarell, A.C.2
Rusak, J.A.3
Triplett, E.W.4
McMahon, K.D.5
-
21
-
-
33646557961
-
Influence of dissolved organic matter source on lake bacterioplankton structure and function - implications for seasonal dynamics of community composition
-
Kritzberg ES, Langenheder S & Lindström ES (2006) Influence of dissolved organic matter source on lake bacterioplankton structure and function - implications for seasonal dynamics of community composition. FEMS Microbiol Ecol 56: 406-417.
-
(2006)
FEMS Microbiol Ecol
, vol.56
, pp. 406-417
-
-
Kritzberg, E.S.1
Langenheder, S.2
Lindström, E.S.3
-
22
-
-
0028983476
-
Relation of algal biovolume to chlorophyll a in selected lakes and wetlands in the north central United States
-
Labaugh JW (1995) Relation of algal biovolume to chlorophyll a in selected lakes and wetlands in the north central United States. Can J Fish Aquat Sci 52: 416-424.
-
(1995)
Can J Fish Aquat Sci
, vol.52
, pp. 416-424
-
-
Labaugh, J.W.1
-
23
-
-
79952088423
-
Epibacterial community patterns on marine macroalgae are host-specific but temporally variable
-
Lachnit T, Meske D, Wahl M, Harder T & Schmitz R (2011) Epibacterial community patterns on marine macroalgae are host-specific but temporally variable. Environ Microbiol 13: 655-665.
-
(2011)
Environ Microbiol
, vol.13
, pp. 655-665
-
-
Lachnit, T.1
Meske, D.2
Wahl, M.3
Harder, T.4
Schmitz, R.5
-
24
-
-
1242322453
-
Influence of nitrogen on phytoplankton biomass and community composition in fifteen Snowy Range lakes (Wyoming, USA)
-
Lafrancois BM, Nydick KR & Caruso B (2003) Influence of nitrogen on phytoplankton biomass and community composition in fifteen Snowy Range lakes (Wyoming, USA). Arct Antarct Alp Res 35: 499-508.
-
(2003)
Arct Antarct Alp Res
, vol.35
, pp. 499-508
-
-
Lafrancois, B.M.1
Nydick, K.R.2
Caruso, B.3
-
25
-
-
84860418423
-
Planctomycetes diversity associated with macroalgae
-
Lage OM & Bondoso J (2011) Planctomycetes diversity associated with macroalgae. FEMS Microbiol Ecol 78: 366-375.
-
(2011)
FEMS Microbiol Ecol
, vol.78
, pp. 366-375
-
-
Lage, O.M.1
Bondoso, J.2
-
26
-
-
34250272131
-
Phytoplankton exudate release as an energy source for growth of pelagic bacteria
-
Larsson U & Hagström A (1979) Phytoplankton exudate release as an energy source for growth of pelagic bacteria. Mar Biol 52: 199-206.
-
(1979)
Mar Biol
, vol.52
, pp. 199-206
-
-
Larsson, U.1
Hagström, A.2
-
27
-
-
33748304120
-
Detection of glycolate oxidase gene glcD diversity among cultured and environmental marine bacteria
-
Lau WWY & Armbrust EV (2006) Detection of glycolate oxidase gene glcD diversity among cultured and environmental marine bacteria. Environ Microbiol 8: 1688-1702.
-
(2006)
Environ Microbiol
, vol.8
, pp. 1688-1702
-
-
Lau, W.W.Y.1
Armbrust, E.V.2
-
28
-
-
34247623963
-
Succession and diel transcriptional response of the glycolate-utilizing component of the bacterial community during a spring phytoplankton bloom
-
Lau WWY, Keil RG & Armbrust EV (2007) Succession and diel transcriptional response of the glycolate-utilizing component of the bacterial community during a spring phytoplankton bloom. Appl Environ Microbiol 73: 2440-2450.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 2440-2450
-
-
Lau, W.W.Y.1
Keil, R.G.2
Armbrust, E.V.3
-
30
-
-
0004170691
-
-
Elsevier Scientific Publishing Company, Amsterdam.
-
Legendre P & Legendre L (1998) Numerical Ecology. Elsevier Scientific Publishing Company, Amsterdam.
-
(1998)
Numerical Ecology
-
-
Legendre, P.1
Legendre, L.2
-
31
-
-
0742267780
-
Influence of inlet bacteria on bacterioplankton assemblage composition in lakes of different hydraulic retention time
-
Lindström ES & Bergstrom AK (2004) Influence of inlet bacteria on bacterioplankton assemblage composition in lakes of different hydraulic retention time. Limnol Oceanogr 49: 125-136.
-
(2004)
Limnol Oceanogr
, vol.49
, pp. 125-136
-
-
Lindström, E.S.1
Bergstrom, A.K.2
-
32
-
-
58149203237
-
CDD: specific functional annotation with the Conserved Domain Database
-
Marchler-Bauer A, Anderson JB, Chitsaz F et al. (2009) CDD: specific functional annotation with the Conserved Domain Database. Nucleic Acids Res 37: D205-D210.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Marchler-Bauer, A.1
Anderson, J.B.2
Chitsaz, F.3
-
33
-
-
0035133496
-
Fitting multivariate models to community data: a comment on distance-based redundancy analysis
-
McArdle BH & Anderson MJ (2001) Fitting multivariate models to community data: a comment on distance-based redundancy analysis. Ecology 82: 290-297.
-
(2001)
Ecology
, vol.82
, pp. 290-297
-
-
McArdle, B.H.1
Anderson, M.J.2
-
34
-
-
0027799615
-
Seasonal relationships between planktonic microorganisms and dissolved organic material in an alpine stream
-
McKnight DM, Smith RL, Harnish RA, Miller CL & Bencala KE (1993) Seasonal relationships between planktonic microorganisms and dissolved organic material in an alpine stream. Biogeochemistry 21: 39-59.
-
(1993)
Biogeochemistry
, vol.21
, pp. 39-59
-
-
McKnight, D.M.1
Smith, R.L.2
Harnish, R.A.3
Miller, C.L.4
Bencala, K.E.5
-
35
-
-
0035135071
-
Spectrofluorometric characterization of dissolved organic matter for indication of precursor organic material and aromaticity
-
McKnight DM, Boyer EW, Westerhoff PK, Doran PT, Kulbe T & Andersen DT (2001) Spectrofluorometric characterization of dissolved organic matter for indication of precursor organic material and aromaticity. Limnol Oceanogr 46: 38-48.
-
(2001)
Limnol Oceanogr
, vol.46
, pp. 38-48
-
-
McKnight, D.M.1
Boyer, E.W.2
Westerhoff, P.K.3
Doran, P.T.4
Kulbe, T.5
Andersen, D.T.6
-
36
-
-
0005128942
-
Products of photosynthesis in natural populations of marine phytoplankton from Gulf of Maine
-
Morris I & Skea W (1978) Products of photosynthesis in natural populations of marine phytoplankton from Gulf of Maine. Mar Biol 47: 303-312.
-
(1978)
Mar Biol
, vol.47
, pp. 303-312
-
-
Morris, I.1
Skea, W.2
-
37
-
-
58049095869
-
Phenology of high-elevation pelagic bacteria: the roles of meteorologic variability, catchment inputs and thermal stratification in structuring communities
-
Nelson CE (2009) Phenology of high-elevation pelagic bacteria: the roles of meteorologic variability, catchment inputs and thermal stratification in structuring communities. ISME J 3: 13-30.
-
(2009)
ISME J
, vol.3
, pp. 13-30
-
-
Nelson, C.E.1
-
38
-
-
33745119447
-
Microbial community dynamics in a humic lake: differential persistence of common freshwater phylotypes
-
Newton RJ, Kent AD, Triplett EW & McMahon KD (2006) Microbial community dynamics in a humic lake: differential persistence of common freshwater phylotypes. Environ Microbiol 8: 956-970.
-
(2006)
Environ Microbiol
, vol.8
, pp. 956-970
-
-
Newton, R.J.1
Kent, A.D.2
Triplett, E.W.3
McMahon, K.D.4
-
39
-
-
79952369878
-
A guide to the natural history of freshwater lake bacteria
-
Newton RJ, Jones SE, Eiler A, McMahon KD & Bertilsson S (2011) A guide to the natural history of freshwater lake bacteria. Microbiol Mol Biol Rev 75: 14-49.
-
(2011)
Microbiol Mol Biol Rev
, vol.75
, pp. 14-49
-
-
Newton, R.J.1
Jones, S.E.2
Eiler, A.3
McMahon, K.D.4
Bertilsson, S.5
-
40
-
-
84873193466
-
-
vegan: Community Ecology Package. Available at:
-
Oksanen J, Blanchet FG, Kindt R, Legendre P, O'Hara RB, Simpson GL, Solymos P, Stevens MHH & Wagner H (2011) vegan: Community Ecology Package. Available at: http://CRAN.R-project.org/package=vegan.
-
(2011)
-
-
Oksanen, J.1
Blanchet, F.G.2
Kindt, R.3
Legendre, P.4
O'Hara, R.B.5
Simpson, G.L.6
Solymos, P.7
Stevens, M.H.H.8
Wagner, H.9
-
41
-
-
0009080778
-
Photorespiration and the C2 cycle
-
Raghavendra AS, ed.), Cambridge University Press, New York.
-
Oliver DJ (1998) Photorespiration and the C2 cycle. Photosynthesis: A Comprehensive Treatise (Raghavendra AS, ed.), pp 173-182. Cambridge University Press, New York.
-
(1998)
Photosynthesis: A Comprehensive Treatise
, pp. 173-182
-
-
Oliver, D.J.1
-
42
-
-
29344437822
-
Synergistic effects of light, temperature, and nitrogen source on transcription of genes for carbon and nitrogen metabolism in the centric diatom Thalassiosira pseudonana (Bacillariophyceae)
-
Parker MS & Armbrust EV (2005) Synergistic effects of light, temperature, and nitrogen source on transcription of genes for carbon and nitrogen metabolism in the centric diatom Thalassiosira pseudonana (Bacillariophyceae). J Phycol 41: 1142-1153.
-
(2005)
J Phycol
, vol.41
, pp. 1142-1153
-
-
Parker, M.S.1
Armbrust, E.V.2
-
43
-
-
77956875131
-
Temporal patterns in glycolate-utilizing bacterial community composition correlate with phytoplankton population dynamics in humic lakes
-
Paver SF & Kent AD (2010) Temporal patterns in glycolate-utilizing bacterial community composition correlate with phytoplankton population dynamics in humic lakes. Microb Ecol 60: 406-418.
-
(2010)
Microb Ecol
, vol.60
, pp. 406-418
-
-
Paver, S.F.1
Kent, A.D.2
-
44
-
-
77954292895
-
Microbial community structure and denitrification in a wetland mitigation bank
-
Peralta AL, Matthews JW & Kent AD (2010) Microbial community structure and denitrification in a wetland mitigation bank. Appl Environ Microbiol 76: 4207-4215.
-
(2010)
Appl Environ Microbiol
, vol.76
, pp. 4207-4215
-
-
Peralta, A.L.1
Matthews, J.W.2
Kent, A.D.3
-
45
-
-
33845394386
-
Differential effect of algal- and soil-derived dissolved organic matter on alpine lake bacterial community composition and activity
-
Perez MT & Sommaruga R (2006) Differential effect of algal- and soil-derived dissolved organic matter on alpine lake bacterial community composition and activity. Limnol Oceanogr 51: 2527-2537.
-
(2006)
Limnol Oceanogr
, vol.51
, pp. 2527-2537
-
-
Perez, M.T.1
Sommaruga, R.2
-
46
-
-
0344256422
-
Bacterial uptake of DOM released from P-limited phytoplankton
-
Puddu A, Zoppini A, Fazi S, Rosati M, Amalfitano S & Magaletti E (2003) Bacterial uptake of DOM released from P-limited phytoplankton. FEMS Microbiol Ecol 46: 257-268.
-
(2003)
FEMS Microbiol Ecol
, vol.46
, pp. 257-268
-
-
Puddu, A.1
Zoppini, A.2
Fazi, S.3
Rosati, M.4
Amalfitano, S.5
Magaletti, E.6
-
47
-
-
79951480123
-
-
R Development Core Team. R Foundation for Statistical Computing, Vienna, Austria.
-
R Development Core Team (2010) R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna, Austria.
-
(2010)
R: A Language and Environment for Statistical Computing
-
-
-
48
-
-
33749824905
-
Local similarity analysis reveals unique associations among marine bacterioplankton species and environmental factors
-
Ruan QS, Dutta D, Schwalbach MS, Steele JA, Fuhrman JA & Sun FZ (2006) Local similarity analysis reveals unique associations among marine bacterioplankton species and environmental factors. Bioinformatics 22: 2532-2538.
-
(2006)
Bioinformatics
, vol.22
, pp. 2532-2538
-
-
Ruan, Q.S.1
Dutta, D.2
Schwalbach, M.S.3
Steele, J.A.4
Fuhrman, J.A.5
Sun, F.Z.6
-
49
-
-
79952055888
-
Linking diel patterns in community respiration to bacterioplankton in an oligotrophic high-elevation lake
-
Sadro S, Nelson CE & Melack JM (2011a) Linking diel patterns in community respiration to bacterioplankton in an oligotrophic high-elevation lake. Limnol Oceanogr 56: 540-550.
-
(2011)
Limnol Oceanogr
, vol.56
, pp. 540-550
-
-
Sadro, S.1
Nelson, C.E.2
Melack, J.M.3
-
50
-
-
80855124857
-
Depth-integrated estimates of ecosystem metabolism in a high-elevation lake (Emerald Lake, Sierra Nevada, California)
-
Sadro S, Melack JM & MacIntyre S (2011b) Depth-integrated estimates of ecosystem metabolism in a high-elevation lake (Emerald Lake, Sierra Nevada, California). Limnol Oceanogr 56: 1764-1780.
-
(2011)
Limnol Oceanogr
, vol.56
, pp. 1764-1780
-
-
Sadro, S.1
Melack, J.M.2
MacIntyre, S.3
-
51
-
-
15444362001
-
Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness
-
Schloss PD & Handelsman J (2005) Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Appl Environ Microbiol 71: 1501-1506.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 1501-1506
-
-
Schloss, P.D.1
Handelsman, J.2
-
52
-
-
0242490780
-
Cytoscape: a software environment for integrated models of biomolecular interaction networks
-
Shannon P, Markiel A, Ozier O, Baliga NS, Wang JT, Ramage D, Amin N, Schwikowski B & Ideker T (2003) Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res 13: 2498-2504.
-
(2003)
Genome Res
, vol.13
, pp. 2498-2504
-
-
Shannon, P.1
Markiel, A.2
Ozier, O.3
Baliga, N.S.4
Wang, J.T.5
Ramage, D.6
Amin, N.7
Schwikowski, B.8
Ideker, T.9
-
53
-
-
84983860623
-
Studies on glycolic acid metabolism by freshwater bacteria
-
Wright RT (1975) Studies on glycolic acid metabolism by freshwater bacteria. Limnol Oceanogr 20: 626-633.
-
(1975)
Limnol Oceanogr
, vol.20
, pp. 626-633
-
-
Wright, R.T.1
-
54
-
-
33745050646
-
Differences in structure and dynamics of Polynucleobacter communities in a temperate and a subtropical lake, revealed at three phylogenetic levels
-
Wu QL & Hahn MW (2006) Differences in structure and dynamics of Polynucleobacter communities in a temperate and a subtropical lake, revealed at three phylogenetic levels. FEMS Microbiol Ecol 57: 67-79.
-
(2006)
FEMS Microbiol Ecol
, vol.57
, pp. 67-79
-
-
Wu, Q.L.1
Hahn, M.W.2
|