In planta stage-specific fungal gene profiling elucidates the molecular strategies of fusarium graminearum growing inside wheat coleoptiles

Plant Cell

Volumn 24, Issue 12, 2013, Pages 5159-5176

  Zhang, Xiao Wei ^a   Jia, Lei Jie ^a   Zhang, Yan ^a   Jiang, Gang ^a   Li, Xuan ^a   Zhang, Dong ^a   Tang, Wei Hua ^a  

^a INSTITUTE OF PLANT PHYSIOLOGY AND ECOLOGY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84873027806     PISSN: 10404651     EISSN: 1532298X     Source Type: Journal    
DOI: 10.1105/tpc.112.105957     Document Type: Article

References (53)

1. Alexander, N.J., Proctor, R.H., and McCormick, S.P. (2009). Genes, gene clusters, and biosynthesis of trichothecenes and fumonisins in Fusarium. Toxin Rev. 28: 198-215.
2. Asran, M.R., and Eraky Amal, M.I. (2011). Aggressiveness of certain Fusarium graminearum isolates on wheat seedling and relation with their Trichothecence production. Plant Pathol. J. 10: 36-41.
3. Boenisch, M.J., and Schäfer, W. (2011). Fusarium graminearum forms mycotoxin producing infection structures on wheat. BMC Plant Biol. 11: 110.
4. Brecht, S., Carruthers, V.B., Ferguson, D.J.P., Giddings, O.K., Wang, G., Jäkle, U., Harper, J.M., Sibley, L.D., and Soldati, D. (2001). The toxoplasma micronemal protein MIC4 is an adhesin composed of six conserved apple domains. J. Biol. Chem. 276: 4119-4127.
5. Bushnell, W.R., Hazen, B.E., and Pritsch, C. (2003). Histology and physiology of Fusarium head blight. In Fusarium Head Blight of Wheat and Barley, K.J. Leonard and W.R. Bushnell, eds (St. Paul, MN: APS Press), pp. 44-83.
6. Cai, S., and Lashbrook, C.C. (2006). Laser capture microdissection of plant cells from tape-transferred paraffin sections promotes recovery of structurally intact RNA for global gene profiling. Plant J. 48: 628-637.
7. Catlett, N.L., Lee, B.N., Yoder, O.C., and Turgeon, B.G. (2003). Split-marker recombination for efficient targeted deletion of fungal genes. Fungal Genet. Newsl. 50: 9-11.
8. Cook, R.J. (1968). Fusarium foot and root rot of cereals in the Pacific Northwest. Phytopathology 58: 127-131.
9. Cuomo, C.A., et al. (2007). The Fusarium graminearum genome reveals a link between localized polymorphism and pathogen specialization. Science 317: 1400-1402.
10. Dal Bello, G.M., Monaco, C.I., and Simon, M.R. (2002). Biological control of seedling blight of wheat caused by Fusarium graminearum with beneficial rhizosphere microorganisms. World J. Microb. Biot. 18: 627-636.
11. Dash, S., Van Hemert, J., Hong, L., Wise, R.P., and Dickerson, J.A. (2012). PLEXdb: Gene expression resources for plants and plant pathogens. Nucleic Acids Res. 40(Database issue): D1194-D1201.
12. De Groot, P.W., Ram, A.F., and Klis, F.M. (2005). Features and functions of covalently linked proteins in fungal cell walls. Fungal Genet. Biol. 42: 657-675.
13. DeZwaan, T.M., Carroll, A.M., Valent, B., and Sweigard, J.A. (1999). Magnaporthe grisea pth11p is a novel plasma membrane protein that mediates appressorium differentiation in response to inductive substrate cues. Plant Cell 11: 2013-2030.
14. Divon, H.H., and Fluhr, R. (2007). Nutrition acquisition strategies during fungal infection of plants. FEMS Microbiol. Lett. 266: 65-74.
15. Dufresne, M., van der Lee, T., Ben M'barek, S., Xu, X., Zhang, X., Liu, T., Waalwijk, C., Zhang, W., Kema, G.H., and Daboussi, M.J. (2008). Transposon-tagging identifies novel pathogenicity genes in Fusarium graminearum. Fungal Genet. Biol. 45: 1552-1561.
16. Duplessis, S., et al. (2011). Obligate biotrophy features unraveled by the genomic analysis of rust fungi. Proc. Natl. Acad. Sci. USA 108: 9166-9171.
17. Gaffoor, I., and Trail, F. (2006). Characterization of two polyketide synthase genes involved in zearalenone biosynthesis in Gibberella zeae. Appl. Environ. Microbiol. 72: 1793-1799.
18. Güldener, U., Seong, K.Y., Boddu, J., Cho, S., Trail, F., Xu, J.R., Adam, G., Mewes, H.W., Muehlbauer, G.J., and Kistler, H.C. (2006). Development of a Fusarium graminearum Affymetrix GeneChip for profiling fungal gene expression in vitro and in planta. Fungal Genet. Biol. 43: 316-325.
19. Harris, P.V., et al. (2010). Stimulation of lignocellulosic biomass hydrolysis by proteins of glycoside hydrolase family 61: Structure and function of a large, enigmatic family. Biochemistry 49: 3305-3316.
20. Inoue, I., Namiki, F., and Tsuge, T. (2002). Plant colonization by the vascular wilt fungus Fusarium oxysporum requires FOW1, a gene encoding a mitochondrial protein. Plant Cell 14: 1869-1883.
21. Jansen, C., von Wettstein, D., Schäfer, W., Kogel, K.H., Felk, A., and Maier, F.J. (2005). Infection patterns in barley and wheat spikes inoculated with wild-type and trichodiene synthase gene disrupted Fusarium graminearum. Proc. Natl. Acad. Sci. USA 102: 16892-16897.
22. Kazan, K., Gardiner, D.M., and Manners, J.M. (2012). On the trail of a cereal killer: Recent advances in Fusarium graminearum pathogenomics and host resistance. Mol. Plant Pathol. 13: 399-413.
23. Kim, Y.T., Lee, Y.R., Jin, J., Han, K.H., Kim, H., Kim, J.C., Lee, T., Yun, S.H., and Lee, Y.W. (2005). Two different polyketide synthase genes are required for synthesis of zearalenone in Gibberella zeae. Mol. Microbiol. 58: 1102-1113.
24. Kunze, M., Pracharoenwattana, I., Smith, S.M., and Hartig, A. (2006). A central role for the peroxisomal membrane in glyoxylate cycle function. Biochim. Biophys. Acta 1763: 1441-1452.
25. Laluk, K., and Mengiste, T. (2010). Necrotroph attacks on plants: Wanton destruction or covert extortion? The Arabidopsis Book 8: e0136, doi/10.1199/tab.0136.
26. Lamb, C., and Dixon, R.A. (1997). The oxidative burst in plant disease resistance. Annu. Rev. Plant Physiol. Plant Mol. Biol. 48: 251-275.
27. Lorenz, M.C., and Fink, G.R. (2001). The glyoxylate cycle is required for fungal virulence. Nature 412: 83-86.
28. Lysøe, E., Seong, K.Y., and Kistler, H.C. (2011). The transcriptome of Fusarium graminearum during the infection of wheat. Mol. Plant Microbe Interact. 24: 995-1000.
29. Ma, L.J., et al. (2010). Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium. Nature 464: 367-373.
30. Malz, S., Grell, M.N., Thrane, C., Maier, F.J., Rosager, P., Felk, A., Albertsen, K.S., Salomon, S., Bohn, L., Schäfer, W., and Giese, H. (2005). Identification of a gene cluster responsible for the biosynthesis of aurofusarin in the Fusarium graminearum species complex. Fungal Genet. Biol. 42: 420-433.
31. O'Donnell, K., Ward, T.J., Geiser, D.M., Corby Kistler, H., and Aoki, T. (2004). Genealogical concordance between the mating type locus and seven other nuclear genes supports formal recognition of nine phylogenetically distinct species within the Fusarium graminearum clade. Fungal Genet. Biol. 41: 600-623.
32. Quinlan, R.J., et al. (2011). Insights into the oxidative degradation of cellulose by a copper metalloenzyme that exploits biomass components. Proc. Natl. Acad. Sci. USA 108: 15079-15084.
33. Reid, L.M., Mather, D.E., Bolton, A.T., and Hamilton, R.I. (1994). Evidence for a gene for silk resistance to Fusarium graminearum Schw. ear rot of maize. J. Hered. 85: 118-121.
34. Rittenour, W.R., and Harris, S.D. (2010). An in vitro method for the analysis of infection-related morphogenesis in Fusarium graminearum. Mol. Plant Pathol. 11: 361-369.
35. Rocha, O., Ansari, K., and Doohan, F.M. (2005). Effects of trichothecene mycotoxins on eukaryotic cells: A review. Food Addit. Contam. 22: 369-378.
36. Ruepp, A., Zollner, A., Maier, D., Albermann, K., Hani, J., Mokrejs, M., Tetko, I., Güldener, U., Mannhaupt, G., Münsterkötter, M., and Mewes, H.W. (2004). The FunCat, a functional annotation scheme for systematic classification of proteins from whole genomes. Nucleic Acids Res. 32: 5539-5545.
37. Seong, K.Y., Zhao, X., Xu, J.R., Güldener, U., and Kistler, H.C. (2008). Conidial germination in the filamentous fungus Fusarium graminearum. Fungal Genet. Biol. 45: 389-399.
38. Skibbe, D.S., Doehlemann, G., Fernandes, J., and Walbot, V. (2010). Maize tumors caused by Ustilago maydis require organspecific genes in host and pathogen. Science 328: 89-92.
39. Son, H., et al. (2011). A phenome-based functional analysis of transcription factors in the cereal head blight fungus, Fusarium graminearum. PLoS Pathog. 7: e1002310.
40. Stephens, A.E., Gardiner, D.M., White, R.G., Munn, A.L., and Manners, J.M. (2008). Phases of infection and gene expression of Fusarium graminearum during crown rot disease of wheat. Mol. Plant Microbe Interact. 21: 1571-1581.
41. Sturm, A., and Tang, G.Q. (1999). The sucrose-cleaving enzymes of plants are crucial for development, growth and carbon partitioning. Trends Plant Sci. 4: 401-407.
42. Tang, W., Coughlan, S., Crane, E., Beatty, M., and Duvick, J. (2006). The application of laser microdissection to in planta gene expression profiling of the maize anthracnose stalk rot fungus Colletotrichum graminicola. Mol. Plant Microbe Interact. 19: 1240-1250.
43. Tang, W.H., Zhang, Y., and Duvick, J. (2012). The application of laser microdissection to profiling fungal pathogen gene expression in planta. In Methods in Molecular Biology: Plant Fungal Pathogens, M. Bolton and B. Thomma, eds (Totowa, New Jersey: Humana Press), pp. 219-236.
44. Trail, F. (2009). For blighted waves of grain: Fusarium graminearum in the postgenomics era. Plant Physiol. 149: 103-110.
45. Vogel, J. (2008). Unique aspects of the grass cell wall. Curr. Opin. Plant Biol. 11: 301-307.
46. Walter, S., Nicholson, P., and Doohan, F.M. (2010). Action and reaction of host and pathogen during Fusarium head blight disease. New Phytol. 185: 54-66.
47. Wang, C., et al. (2011). Functional analysis of the kinome of the wheat scab fungus Fusarium graminearum. PLoS Pathog. 7: e1002460.
48. Wang, Z.Y., Thornton, C.R., Kershaw, M.J., Debao, L., and Talbot, N.J. (2003). The glyoxylate cycle is required for temporal regulation of virulence by the plant pathogenic fungus Magnaporthe grisea. Mol. Microbiol. 47: 1601-1612.
49. Wolpert, T.J., Dunkle, L.D., and Ciuffetti, L.M. (2002). Host-selective toxins and avirulence determinants: What's in a name? Annu. Rev. Phytopathol. 40: 251-285.
50. Wong, P., Walter, M., Lee, W., Mannhaupt, G., Münsterkötter, M., Mewes, H.W., Adam, G., and Güldener, U. (2011). FGDB: Revisiting the genome annotation of the plant pathogen Fusarium graminearum. Nucleic Acids Res. 39(Database issue): D637-D639.
51. Wu, A.B., Li, H.P., Zhao, C.S., and Liao, Y.C. (2005). Comparative pathogenicity of Fusarium graminearum isolates from China revealed by wheat coleoptile and floret inoculations. Mycopathologia 160: 75-83.
52. Xu, J.R., Peng, Y.L., Dickman, M.B., and Sharon, A. (2006). The dawn of fungal pathogen genomics. Annu. Rev. Phytopathol. 44: 337-366.
53. Yuan, T.L., Zhang, Y., Yu, X.J., Cao, X.Y., and Zhang, D. (2008). Optimization of transformation system of Fusarium graminearum. Plant Physiol. Commun. 44: 251-256 (in Chinese).