Introduction to the Special Section on Genomics

Child Development

Volumn 84, Issue 1, 2013, Pages 6-16

  Grigorenko, Elena L ^a   Dozier, Mary ^b  

^a YALE UNIVERSITY   (United States)

^b UNIVERSITY OF DELAWARE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EDITORIAL; GENETIC ASSOCIATION; GENETIC EPIGENESIS; GENETIC TRANSCRIPTION; GENETIC VARIABILITY; GENETICS; GENOMICS; HUMAN; NUCLEOTIDE SEQUENCE;

BASE SEQUENCE; EPIGENESIS, GENETIC; GENETIC VARIATION; GENOME-WIDE ASSOCIATION STUDY; GENOMICS; HUMANS; TRANSCRIPTION, GENETIC;

EID: 84872965724     PISSN: 00093920     EISSN: 14678624     Source Type: Journal    
DOI: 10.1111/cdev.12045     Document Type: Editorial

References (73)

1. Beaudet, A. L. (2013). The utility of chromosomal microarray analysis in developmental and behavioral pediatrics. Child Development, 84, 121-132.
2. Bernstein, B. E., Stamatoyannopoulos, J. A., Costello, J. F., Ren, B., Milosavljevic, A., Meissner, A., et al. (2010). The NIH roadmap epigenomics mapping consortium. Nature Biotechnology, 28, 1045-1048. doi:10.1038/nbt1010-1045
3. Best is yet to come (editorial). (2011). Nature, 470, 140. doi:10.1038/470140a
4. Bird, A. (2007). Perceptions of epigenetics. Nature, 447, 396-398. doi:10.1038/nature05913
5. Bjornsson, H. T., Fallin, M. D., & Feinberg, A. P. (2004). An integrated epigenetic and genetic approach to common human disease. Trends in Genetics, 20, 350-358.
6. Boker, S. M., Molenaar, P. C. M., & Nesselroade, J. R. (2009). Issues in intraindividual variability: Individual differences in equilibria and dynamics over multiple time scales. Psychology and Aging, 24, 858-862.
7. Botkin, J. R., Teutsch, S. M., Kaye, C. I., Hayes, M., Haddow, J. E., Bradley, L. A., & EGAPP Working Group. (2010). Outcomes of interest in evidence-based evaluations of genetic tests. Genetics in Medicine, 12, 228-235.
8. Clamp, M., Fry, B., Kamal, M., Xie, X., Cuff, J., Lin, M. F., et al. (2007). Distinguishing protein-coding and noncoding genes in the human genome. PNAS, 104, 19428-19433.
9. Collins, F. S. (2010). The language of life: DNA and the revolution in personalised medicine. New York, NY: HarperCollins.
10. Connolly, J. J., Glessner, J. T., & Hakonarson, H. (2013). A genome-wide association study of autism incorporating ADI-R, ADOS, and SRS. Child Development, 84, 17-33.
11. Costa, V., Angelini, C., De Feis, I., & Ciccodicola, A. (2011). Uncovering the complexity of transcriptomes with RNA-Seq. Journal of Biomedicine and Biotechnology, 10, 1-19.
12. Courtney, E., Kornfeld, S., Janitz, K., & Janitz, M. (2010). Transcriptome profiling in neurodegenerative disease. Journal of Neuroscience Methods, 193, 189-202.
13. DeFrancesco, L., & Subbaraman, N. (2011). Sequencing firms eye pathology labs as next big market opportunity. Nature Biotechnology, 29, 379-380.
14. Doolittle, W. F., & Sapienza, C. (1980). Selfish genes, the phenotype paradigm and genome evolution. Nature, 284, 601-603.
15. Duster, T. (2006). Comparative perspectives and competing explanations: Taking on the newly configured reductionist challenge to sociology. American Sociological Review, 71, 1-15.
16. Ercan-Sencicek, A. G., Davis Wright, N. R., Sanders, S. S., Oakman, N., Valdes, L., Bakkaloglu, B., et al. (2012). A balanced t(10;15) translocation in a male patient with developmental language disorder. European Journal of Medical Genetics, 55, 128-131.
17. Essex, M. J., Boyce, W. T., Heertzman, C., Lam, L., Armstrong, J. M., Neumann, S. M. A., et al. (2013). Epigenetic vestiges of early developmental adversity: Childhood stress exposure and DNA methylation in adolescence. Child Development, 84, 58-75.
18. Feero, W., & Green, E. D. (2011). Genomics education for health care professionals in the 21st century. JAMA, 306, 989-990. doi:10.1001/jama.2011.1245
19. Feinberg, A. P. (2007). Phenotypic plasticity and the epigenetics of human disease. Nature, 447, 433-440. doi:10.1038/nature05919
20. Fogel, A. (2011). Theoretical and applied dynamic systems research in developmental science. Child Development Perspectives, 5, 267-272. doi:10.1111/j.1750-8606.2011.00174.x
21. Fraga, M. F., Ballestar, E., Paz, M. F., Ropero, S., Setien, F., Ballestar, M. L., et al. (2005). Epigenetic differences arise during the lifetime of monozygotic twins. Proceedings of the National Academy of Sciences of the United States of America, 102, 10604-10609.
22. Friso, S., Choi, S. W., Girelli, D., Mason, J. B., Dolnikowski, G. G., Bagley, P. J., et al. (2002). A common mutation in the 5, 10-methylenetetrahydrofolate reductase gene affects genomic DNA methylation through an interaction with folate status. PNAS, 99, 5606-5611.
23. Frueh, F. W., Amur, S., Mummaneni, P., Epstein, R. S., Aubert, R. E., DeLuca, T. M., et al. (2008). Pharmacogenomic biomarker information in drug labels approved by the United States Food and Drug Administration: Prevalence of related drug use. Pharmacotherapy: The Journal of Human Pharmacology and Drug Therapy, 28, 992-998. doi:10.1592/phco.28.8.992
24. Gabriel, S. B., Schaffner, S. F., Nguyen, H., Moore, J. M., Roy, J., Blumenstiel, B., et al. (2002). The structure of haplotype blocks in the human genome. Science, 296, 2225-2229.
25. Goldstein, D. B. (2009). Common genetic variation and human traits. New England Journal of Medicine, 360, 1696-1698. doi:10.1056/NEJMp0806284
26. Gollust, S. E., Hull, S. C., & Wilfond, B. S. (2002). Limitations of direct-to-consumer advertising for clinical genetic testing. JAMA, 288, 1762-1767.
27. Green, E. D., & Guyer, M. S. (2011). Charting a course for genomic medicine from base pairs to bedside. Nature, 470, 204-213. doi:10.1038/nature09764
28. Guttmacher, A. E., Porteous, M. E., & McInerney, J. D. (2007). Educating health-care professionals about genetics and genomics. Nature Reviews Genetics, 8, 151-157. doi:10.1038/nrg2007
29. Hardy, J., & Singleton, A. (2009). Genomewide association studies and human disease. New England Journal of Medicine, 360, 1759-1768.
30. Hawkins, R. D., Hon, G. C., & Ren, B. (2010). Next-generation genomics: An integrative approach. Nature Reviews Genetics, 11, 476-486. doi:10.1038/nrg2795
31. Herring, R. J. (2007). The genomics revolution and development studies: Science, poverty and politics. Journal of Development Studies, 43, 1-30.
32. Heseker, H. (2011). Folic acid and other potential measures in the prevention of neural tube defects. Annals of Nutrition & Metabolism, 59, 41-45. doi:10.1159/000332126
33. Hu, V. W. (2013). From genes to environment: Using integrative genomics to build a "systems-level" understanding of autism spectrum disorders. Child Development, 84, 89-103.
34. Human Genome Program. (2008). Genomics and its impact on science and society: A 2008 primer. Washington, DC: U.S. Department of Energy.
35. Issa, J. P. (2000). CpG-island methylation in aging and cancer. Current Topics in Microbiology & Immunology, 249, 101-118.
36. Jacob, R. A. (1999). The role of micronutrients in DNA synthesis and maintenance. Advances in Experimental Medicine & Biology, 472, 101-113.
37. Jacquier, A. (2009). The complex eukaryotic transcriptome: Unexpected pervasive transcription and novel small RNAs. Nature Reviews Genetics, 10, 833-844.
38. Jaenisch, R., & Bird, A. (2003). Epigenetic regulation of gene expression: How the genome integrates intrinsic and environmental signals. Nature Genetics, 33(Suppl.), 245-254.
39. Kato, T., Iwamoto, K., Kakiuchi, C., Kuratomi, G., & Okazaki, Y. (2005). Genetic or epigenetic difference causing discordance between monozygotic twins as a clue to molecular basis of mental disorders. Molecular Psychiatry, 10, 622-630.
40. Lander, E. S. (2011). Initial impact of the sequencing of the human genome. Nature, 470, 187-197. doi:10.1038/nature09792
41. Lander, E. S., & Schork, N. J. (1994). Genetic dissection of complex traits. Science, 265, 2037-2048.
42. Levy, P. A. (2010). An overview of newborn screening. Journal of Developmental and Behavioral Pediatrics, 31, 622-631.
43. Lindberg, J., & Lundeberg, J. (2010). The plasticity of the mammalian transcriptome. Genomics, 95, 1-6.
44. Lohmueller, K. E., Pearce, C. L., Pike, M., Lander, E. S., & Hirschhorn, J. N. (2003). Meta-analysis of genetic association studies supports a contribution of common variants to susceptibility to common disease. Nature Genetics, 33, 177-182.
45. Manolio, T. A. (2010). Genomewide association studies and assessment of the risk of disease. New England Journal of Medicine, 363, 166-176. doi:10.1056/NEJMra0905980
46. Martin, J. A., & Wang, Z. (2011). Next-generation transcriptome assembly. Nature Revews Genetics, 12, 671-682. doi:10.1038/nrg3068
47. Miller, D. T., Adam, M. P., Aradhya, S., Biesecker, L. G., Brothman, A. R., Carter, N. P., et al. (2010). Consensus statement: Chromosomal microarray is a first-tier clinical diagnostic test for individuals with developmental disabilities or congenital anomalies. American Journal of Human Genetics, 86, 749-764. doi:10.1016/j.ajhg.2010.04.006
48. Naumova, O. Y., Lee, M., Rychkov, S. Y., Vlasova, N. V., & Grigorenko, E. L. (2013). Gene expression in the human brain: The current state of the study of specificity and spatiotemporal dynamics. Child Development, 84, 76-88.
49. Need, A. C., & Goldstein, D. B. (2009). Next generation disparities in human genomics: Concerns and remedies. Trends in Genetics, 25, 489-494. doi:10.1016/j.tig.2009.09.012
50. Ozsolak, F., & Milos, P. M. (2011). RNA sequencing: Advances, challenges and opportunities. Nature Revews Genetics, 12, 87-98. doi:10.1038/nrg2934
51. Plomin, R. (2013). Child development and molecular genetics: 13 years later. Child Development, 84, 104-120.
52. Plomin, R., DeFries, J. C., Craig, I. W., & McGuffin, P. (Eds.). (2003). Behavioral genetics in the postgenomic era. Washington, DC: APA.
53. Plomin, R., & Rutter, M. (1998). Child development, molecular genetics, and what to do with genes once they are found. Child Development, 69, 1223-1242.
54. Ridley, M. (1999). Genome: The autobiography of a apecies in 23 chapters. London, UK: Fourth Estate.
55. Risch, N., Burchard, E., Ziv, E., & Tang, H. (2007). Categorization of humans in biomedical research: Genes, race and disease. Genome Biology, 3. Retrieved from http://www.ncbi.nlm.nih.gov/pmc/articles/PMC139378/pdf/gb-2002-3-7-comment2007.pdf
56. Rubinstein, W. S., & Roy, H. K. (2005). Practicing medicine at the front lines of the genomic revolution. Archives of Internal Medicine, 165, 1815-1817.
57. Schully, S. D., Benedicto, C. B., Gillanders, E. M., Wang, S. S., & Khoury, M. J. (2011). Translational research in cancer genetics: The road less traveled. Public Health Genomics, 14, 1-8.
58. Shostak, S., Zarhin, D., & Ottman, R. (2011). What's at stake? Genetic information from the perspective of people with epilepsy and their family members. Social Science & Medicine, 73, 645-654. doi:10.1016/j.socscimed.2011.06.043
59. Silvers, A., & Stein, M. A. (2003). Human rights and genetic discrimination: Protecting genomics' promise for public health. Journal of Law, Medicine & Ethics, 31, 377-389.
60. Slatkin, M. (2009). Epigenetic inheritance and the missing heritability problem. Genetics, 182, 845-850.
61. Szyf, M., & Bick, J. (2013). DNA methylation: A mechanism for embedding early life experiences in the genome. Child Development, 84, 49-57.
62. Taft, R. J., Pheasant, M., & Mattick, J. S. (2007). The relationship between non-protein-coding DNA and eukaryotic complexity. BioEssays, 29, 288-299.
63. Thomas, S. M. (2004). Society and ethics-The genetics of disease. Current Opinion in Genetics & Development, 14, 287-291. doi:10.1016/j.gde.2004.04.014
64. Torrance, A. W. (2010). Family law and the genomic revolution. University of Missouri-Kansas City Law Review, 79, 271-282.
65. Van Speybroeck, L. (2002). From epigenesis to epigenetics: The case of C. H. Waddington. Annals of the New York Academy of Sciences, 981, 61-81.
66. Velculescu, V. E., Zhang, L., Zhou, W., Vogelstein, J., Basrai, M. A., Bassett, D. E., Jr., et al. (1997). Characterization of the yeast transcriptome. Cell, 88, 243-251.
67. Waddington, C. (1940). The genetic control of wing development in Drosophila. Journal of Genetics, 41, 75-80.
68. Wang, Z., Gerstein, M., & Snyder, M. (2009). RNA-Seq: A revolutionary tool for transcriptomics. Nature Reviews Genetics, 10, 57-63.
69. Weinshilboum, R. M. (2002). The genomic revolution and medicine. Mayo Clinic Proceedings, 77, 745-746.
70. Willemsen, M. H., de Leeuw, N., de Brouwer, A. P. M., Pfundt, R., Hehir-Kwa, J. Y., Yntema, H. G., et al. (2012). Interpretation of clinical relevance of X-chromosome copy number variations identified in a large cohort of individuals with cognitive disorders and/or congenital anomalies. European Journal of Medical Genetics, 55, 586-598. doi:10.1016/j.ejmg.2012.05.001
71. Williams, M. S. (2007). Insurance coverage for pharmacogenomic testing. Personal Medicine, 4, 479-487.
72. Zhang, Y., Haraksingh, R., Grubert, F., Abyzov, A., Gerstein, M., Weissman, S., et al. (2013). Child development and structural variation in the human genome. Child Development, 84, 34-48.
73. Zuk, O., Hechter, E., Sunyaev, S. R., & Lander, E. S. (2012). The mystery of missing heritability: Genetic interactions create phantom heritability. PNAS, 109, 1193-1198.