Construction of a genetic linkage map and identification of molecular markers in peach rootstocks for response to peach tree short life syndrome

Tree Genetics and Genomes

Volumn 3, Issue 4, 2007, Pages 341-350

  Blenda, A V ^a   Verde, I ^b   Georgi, L L ^a   Reighard, G L ^a   Forrest, S D ^a   Munoz Torres M ^a   Baird, W V ^a   Abbott, A G ^a  

^a CLEMSON UNIVERSITY   (United States)

^b MiRAAF   (Italy)

Author keywords

Amplified fragment length polymorphism (AFLP); Disease susceptibility; Indirect mapping; Prunus persica; Resistance gene analog (RGA); Ring nematode; Simple sequence repeat (SSR)

Indexed keywords

PRUNUS; PRUNUS PERSICA; ROSACEAE;

EID: 34548267132     PISSN: 16142942     EISSN: 16142950     Source Type: Journal    
DOI: 10.1007/s11295-006-0074-9     Document Type: Article

References (49)

1. Abbott AG, Rajapakse S, Sosinski B, Lu ZX, Sossey-Alaoui K, Gannavarapu M, Reighard G, Ballard RE, Baird WV, Scorza R, Callahan A (1998) Construction of saturated linkage maps of peach crosses segregating for characters controlling fruit quality, tree architecture and pest resistance. Acta Hort 465:41-49
2. Aranzana MJ, Garcia-Mas J, Carbo J, Arus P (2002) Development and variability analysis of microsatellite markers in peach. Plant Breed 121:87-92
3. Aranzana MJ, Pineda A, Cosson P, Dirlewanger E, Ascasibar J, Cipriani G, Ryder CD, Testolin R, Abbott A, King GJ, Iezzoni AF, Arus P (2003) A set of simple-sequence repeat (SSR) markers covering the Prunus genome. Theor Appl Genet 106:819-825
4. Arus P, Messeguer R, Viruel M, Tobutt K, Dirlewanger E, Santi F, Quarta R, Ritter E (1994) The European Prunus mapping project-progress in the almond linkage map. Euphytica 77:97-100
5. Baird WV, Ballard RE, Rajapakse S, Abbott AG (1996) Progress in Prunus mapping and application of molecular markers to germplasm improvement. HortScience 31:1099-1106
6. Blenda AV, Wechter WP, Reighard GL, Baird WV, Abbott AG (2006) Development and characterisation of diagnostic AFLP markers in Prunus persica for its response to peach tree short life syndrome. J Hort Sci Biotech 81:281-288
7. Cipriani G, Lot G, Huang WG, Marrazzo MT, Peterlunger E, Testolin R (1999) AC/GT and AG/CT microsatellite repeats in peach [Prunus persica (L.) Batsch]: isolation, characterization and cross-species amplification in Prunus. Theor Appl Genet 99:65-72
8. Claverie M, Bosselut N, Lecouls AC, Voisin R, Lafargue B, Poizat C, Kleinhentz M, Laigert F, Dirlewanger E, Esmenjaud D (2004) Location of independent root-knot nematode resistance genes in plum and peach. Theor Appl Genet 108:765-773
9. Decroocq V, Foulongne M, Lambert P, Gall OL, Mantin C, Pascal T, Schurdi-Levraud V, Kervella J (2005) Analogues of virus resistance genes map to QTLs for resistance to sharka disease in Prunus davidiana. Mol Gen Genet 272:680-689
10. Dirlewanger E, Pascal T, Zuger C, Kervella J (1996) Analysis of molecular markers associated with powdery mildew resistance genes in peach [Prunus persica (L.) Batsch] × Prunus davidiana hybrids. Theor Appl Genet 93:909-919
11. Dirlewanger E, Pronier V, Parvery C, Rothan C, Guye A, Monet R (1998) Genetic linkage map of peach [Prunus persica (L.) Batsch] using morphological and molecular markers. Theor Appl Genet 97:888-895
12. Dirlewanger E, Cosson P, Tavaud M, Aranzana MJ, Poizat C, Zanetto A, Arus P, Laigret F (2002) Development of microsatellite markers in peach [Prunus persica (L.) Batsch] and their use in genetic diversity analysis in peach and sweet cherry (Prunus avium L.). Theor Appl Genet 105:127-138
13. Dirlewanger E, Cosson P, Howad W, Capdeville G, Bosselut N, Claverie M, Voisin R, Poizat C, Lafargue B, Baron O, Laigret F, Kleinhentz M, Arus P, Esmenjaud D (2004a) Microsatellite genetic linkage maps of Myrobalan plum and an almond-peach hybrid-location of root-knot nematode resistance genes. Theor Appl Genet 109:827-838
14. Dirlewanger E, Graziano E, Joobeur T, Garriga-Caldere, Cosson P, Howad W, Arus P (2004b) Comparative mapping and marker-assisted selection in Rosaceae fruit crops. Proc Natl Acad Sci USA 101:9891-9896
15. Eldredge L, Ballard R, Baird V, Abbott A, Morgens P, Callahan A, Scorza R, Monet R (1992) Application of RFLP analysis to genetic linkage mapping in peaches. HortScience 27:160-163
16. Esmenjaud D, Minot JC, Voisin R, Bonnet A, Salesses G (1996) Inheritance of resistance to the root-knot nematode Meloidogine arenaria in Myrobalan plum. Theor Appl Genet 92:873-879
17. Foulongne M, Pascal T, Arus P, Kervella J (2003a) The potential of Prunus davidiana for introgression into peach [Prunus persica (L.) Batsch] assessed by comparative mapping. Theor Appl Genet 107:227-238
18. Foulongne M, Thierry P, Pfeiffer F, Kervella J (2003b) QTLs for powdery mildew resistance in peach × Prunus davidiana crosses: consistency across generations and environments. Mol Breed 12:33-50
19. Georgi LL, Wang E, Yvergniaux D, Blenda A, Inigo M, Sosinski B, Reighard G, Abbott AG (2002a) Peach: the model genome for Rosaceae. Acta Hort 575:145-156
20. Georgi LL, Wang Y, Yvergniaux D, Ormsbee T, Inigo M, Reighard G, Abbott AG (2002b) Construction of a BAC library and its application to the identification of simple sequence repeats in peach [Prunus persica (L.) Batsch]. Theor Appl Genet 105:1151-1158
21. Gillen AM, Bliss FA (2005) Identification and mapping of markers linked to the Mi gene for root-knot nematode resistance in peach. J Amer Soc Hort Sci 130:24-33
22. Giovannoni JJ, Wing RA, Ganal MW, Tanksley SD (1991) Isolation of molecular markers from specific chromosomal intervals using DNA pools from existing mapping populations. Nucleic Acids Res 19:6553-6558
23. Joobeur T, Viruel MA, de Vicente MC, Jauregui B, Ballester J, Dettori MT, Verde I, Truco MJ, Messeguer R, Batlle I, Quarta R, Dirlewanger E, Arus P (1998) Construction of a saturated linkage map for Prunus using an almond × peach F-2 progeny. Theor Appl Genet 97:1034-1041
24. Lalli DA, Decroocq V, Blenda AV, Schurdi-Levraud V, Garay L, Le Gall O, Damsteegt V, Reighard GL, Abbott AG (2005) Identification and mapping of resistance gene analogs (RGAs) in Prunus: a resistance map for Prunus. Theor Appl Genet 111:1504-1513
25. Lambert P, Hagen LS, Arus P, Audergon JM (2004) Genetic linkage maps of two apricot cultivars (Prunus armeniaca L.) compared with the almond Texas × peach Earlygold reference map for Prunus. Theor Appl Genet 108:1120-1130
26. Lander ES, Green P, Abrahamson J, Barlow A, Daly MJ, Lincoln SE, Newburg L (1987) Mapmaker: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1:174-181
27. Lu ZX, Sosinski B, Reighard GL, Baird WV, Abbott AG (1998) Construction of a genetic linkage map and identification of AFLP markers for resistance to root-knot nematodes in peach rootstocks. Genome 41:199-207
28. Lu ZX, Reighard GL, Nyczepir AP, Beckman TG, Ramming DW (2000) Inheritance of resistance to root-knot nematodes (Meloidogyne sp.) in Prunus rootstocks. HortScience 35:1344-1346
29. Martínez-Gómez P, Arulsekar S, Potter D, Gradziel TM (2003) An extended interspecific gene pool available to peach and almond breeding as characterized using simple sequence repeat (SSR) markers. Euphytica 131:313-322
30. Michelmore RW, Paran I, Kesseli RV (1991) Identification of markers linked to disease-resistance genes by bulked segregant analysis: a rapid method to detect markers in specific genomic regions by using segregating populations. Proc Natl Acad Sci USA 88:9828-9832
31. Miller RW (1992) Estimated peach tree losses 1980 to 1992 in South Carolina-causes and economic impact. Sixth Stone Fruit Decline Workshop, Fort Valley, GA, pp 121-127, 26-28 (October)
32. Nyczepir AP, Zehr EI, Lewis SA, Harshman DC (1983) Short life of peach trees induced by Criconemella xenoplax. Plant Dis 67:507-508
33. Nyczepir AP, Reilly CC, Motsinger RE, Okie WR (1988) Behavior, parasitism, morphology, and biochemistry of Criconemella xenoplax and C. ornata on peach. J Nematol 20:40-46
34. Okie WR (1998) Handbook of peach and nectarine varieties. USDA-ARS Agriculture Handbook, Washington, DC
35. Okie WR, Nyczepir AP, Reilly CC (1987) Screening of peach and other Prunus species for resistance to ring nematode in the greenhouse. J Amer Soc Hort Sci 112:67-70
36. Okie WR, Beckman TG, Nyczepir AP, Reighard GL, Newall WCJ, Zehr EI (1994) BY520-9, a peach rootstock for the southeastern United States that increases scion longevity. HortScience 29:705-706
37. Rajapakse S, Belthoff LE, He G, Estager AE, Scorza R, Verde I, Ballard RE, Baird WV, Callahan A, Monet R, Abbott AG (1995) Genetic linkage mapping in peach using morphological, RFLP and RAPD markers. Theor Appl Genet 90:503-510
38. Silva C, Garcia-Mas J, Sanchez AM, Arus P, Oliveira M (2005) Looking into flowering time in almond (Prunus dulcis (Mill) D. A. Webb): the candidate gene approach. Theor Appl Genet 110:959-996
39. Sosinski B, Gannavarapu M, Hager LD, Beck LE, King GJ, Ryder CD, Rajapakse S, Baird WV, Ballard RE, Abbott AG (2000) Characterization of microsatellite markers in peach [Prunus persica (L.) Batsch]. Theor Appl Genet 101:421-428
40. Tanksley SD (1997) Identification, manipulation and cloning of economically valuable QTLs in crop plants. FASEB J 11:915
41. Testolin R, Marrazzo T, Cipriani G, Quarta R, Verde I, Dettori MT, Pancaldi M, Sansavini S (2000) Microsatellite DNA in peach (Prunus persica L. Batsch) and its use in fingerprinting and testing the genetic origin of cultivars. Genome 43:512-520
42. Van Ooijen J, Voorrips RE (2001) JoinMap® 3.0, software for the calculation of genetic linkage maps. Plant Research International, Wageningen, The Netherlands
43. Verde I, Quarta R, Cedrola C, Dettori MT (2002) QTL analysis of agronomic traits in a BC1 peach population. Acta Hort 592:291-297
44. Verde I, Lauria M, Dettori MT, Vendramin E, Balconi C, Micali S, Wang Y, Marrazzo MT, Cipriani G, Hartings H, Testolin R, Abbott AG, Motto M, Quarta R (2005) Microsatellite and AFLP markers in the [Prunus persica L. (Batsch)] × P. ferganensis BC1 linkage map: saturation and coverage improvement. Theor Appl Genet 111:1013-1021
45. Viruel MA, Madur D, Dirlewanger E, Pascal T, Kervella J (1998) Mapping quantitative trait loci controlling peach leaf curl resistance. Acta Hort 465:79-87
46. Vos P, Hogers R, Bleeker M, Reijans M, van de Lee T, Hornes M, Frijters A, Pot J, Peleman J, Kuiper M, Zabeau M (1995) AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res 23:4407-4414
47. Wang Y, Georgi LL, Zhebentyayeva TN, Reighard GL, Scorza R, Abbott AG (2002a) High-throughput targeted SSR marker development in peach (Prunus persica). Genome 45:319-328
48. Wang Y, Georgi LL, Reighard GL, Scorza R, Abbott AG (2002b) Genetic mapping of the evergrowing gene in peach Prunus persica (L.) Batsch. J Heredity 93:352-358
49. Westman A, Miller B, Spira T, Tonkyn D, Abbott A (2002) Molecular genetic assessment of the risk of gene escape in strawberry, a model perennial study crop. Proceedings of the Gene Flow Workshop. Ohio State University Press, Columbus, OH, pp 6-24 (March 5-6)