-
1
-
-
34547140875
-
The human disease network
-
K.L Goh, M.E. Cusick, D. Valle, B. Childs, M. Vidal and A.L. Barabasi, "The human disease network," Proc Nat! Acad Sci USA, vol. 104, no. 21, 2007, pp. 8685-90.
-
(2007)
Proc Nat! Acad Sci USA
, vol.104
, Issue.21
, pp. 8685-8690
-
-
Goh, K.L.1
Cusick, M.E.2
Valle, D.3
Childs, B.4
Vidal, M.5
Barabasi, A.L.6
-
2
-
-
35148838537
-
Drug-target network
-
M.A. Yildirim, K.L Goh, M.E. Cusick, A.L. Barabasi, M. Vidal,"Drug-target network," Nat Biotechnol. vol. 25, no. 10, 2007, pp. 1119-26.
-
(2007)
Nat Biotechnol.
, vol.25
, Issue.10
, pp. 1119-1126
-
-
Yildirim, M.A.1
Goh, K.L.2
Cusick, M.E.3
Barabasi, A.L.4
Vidal, M.5
-
3
-
-
77649222972
-
Network-based elucidation of human disease similarities reveals common functional modules enriched for pluripotent drug targets
-
S. Suthram, J.T. Dudley, A.P. Chiang, R. Chen, T.J. Hastie and A.J. Butte, "Network-based elucidation of human disease similarities reveals common functional modules enriched for pluripotent drug targets," PLoS Comput BioI, vol. 6, 2010, pp. e1000662.
-
(2010)
PLoS Comput BioI
, vol.6
-
-
Suthram, S.1
Dudley, J.T.2
Chiang, A.P.3
Chen, R.4
Hastie, T.J.5
Butte, A.J.6
-
4
-
-
33748502967
-
The Comparative toxicogenomics database (CTD): A resource for comparative toxicological studies
-
C.J. Mattingly, M.C. Rosenstein, G.T. Colby, J.N. Forrest Jr and J.L. Boyer, "The Comparative toxicogenomics database (CTD): a resource for comparative toxicological studies," J. Exp. Zoolog. A Compo Exp. BioI, vol. 305, 2006, pp. 689-692.
-
(2006)
J. Exp. Zoolog. A Compo Exp. BioI
, vol.305
, pp. 689-692
-
-
Mattingly, C.J.1
Rosenstein, M.C.2
Colby, G.T.3
Forrest Jr., J.N.4
Boyer, J.L.5
-
5
-
-
68249111344
-
Building disease-specific drug-protein connectivity maps from molecular interaction networks and PubMed abstracts
-
J. Li, X. Zhu and J.Y. Chen, "Building disease-specific drug-protein connectivity maps from molecular interaction networks and PubMed abstracts," PLoS Comput BioI, vol. 5,2009, pp. e1000450
-
(2009)
PLoS Comput BioI
, vol.5
-
-
Li, J.1
Zhu, X.2
Chen, J.Y.3
-
6
-
-
33845876254
-
The Connectivity Map: A new tool for biomedical research
-
J. Lamb, "The Connectivity Map: a new tool for biomedical research," Nat Rev Cancer, vol. 7, 2007, pp. 54-60.
-
(2007)
Nat Rev Cancer
, vol.7
, pp. 54-60
-
-
Lamb, J.1
-
7
-
-
33749335282
-
The Connectivity Map: Using gene-expression signatures to connect small molecules, genes, and disease
-
J. Lamb, E.D. Crawford, D. Peck, J.W. Modell, LC. Blat, M.J. Wrobel, and et al., "The Connectivity Map: using gene-expression signatures to connect small molecules, genes, and disease," Science, vol. 313, 2006, pp. 1929-1935.
-
(2006)
Science
, vol.313
, pp. 1929-1935
-
-
Lamb, J.1
Crawford, E.D.2
Peck, D.3
Modell, J.W.4
Blat, L.C.5
Wrobel, M.J.6
-
8
-
-
70350227039
-
Systematic evaluation of drug-disease relationships to identify leads for novel drug uses
-
A.P. Chiang and A.J. Butte, "Systematic evaluation of drug-disease relationships to identify leads for novel drug uses," Clin Phannacol Ther, vol. 86, 2009, pp. 507-510.
-
(2009)
Clin Phannacol Ther
, vol.86
, pp. 507-510
-
-
Chiang, A.P.1
Butte, A.J.2
-
9
-
-
79958754253
-
PREDICT: A method for inferring novel drug indications with application to personalized medicine
-
A. Gottlieb, G. Y Stein, E. Ruppin and R. Sharana, "PREDICT: a method for inferring novel drug indications with application to personalized medicine," Mol Syst BioI, vol. 7,2011, pp. 496.
-
(2011)
Mol Syst BioI
, vol.7
, pp. 496
-
-
Gottlieb, A.1
Stein, G.Y.2
Ruppin, E.3
Sharana, R.4
-
10
-
-
84859264011
-
A co-module approach for elucidating drugdisease associations and revealing their molecular basis
-
S. Zhao and and S. Li, "A co-module approach for elucidating drugdisease associations and revealing their molecular basis," Bioinfonnatics, vol. 28, no. 7, 2012, pp. 955-61.
-
(2012)
Bioinfonnatics
, vol.28
, Issue.7
, pp. 955-961
-
-
Zhao, S.1
Li, S.2
-
11
-
-
0035998736
-
Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders
-
A. Hamosh, A.F. Scott, J. Amberger, C. Bocchini, D. Valle and V.A. McKusick, "Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders," Nucleic Acids Res, vol. 30,2002, pp. 52-55.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 52-55
-
-
Hamosh, A.1
Scott, A.F.2
Amberger, J.3
Bocchini, C.4
Valle, D.5
McKusick, V.A.6
-
12
-
-
76749134818
-
Associating Genes and Protein Complexes with Disease via Network Propagation
-
O. Vanunu, O. Magger, E. Ruppin, T. Shlomi and R. Sharan, "Associating Genes and Protein Complexes with Disease via Network Propagation," PLoS Comput BioI. vol. 6, no. 1,2010, pp. e1000641.
-
(2010)
PLoS Comput BioI.
, vol.6
, Issue.1
-
-
Vanunu, O.1
Magger, O.2
Ruppin, E.3
Shlomi, T.4
Sharan, R.5
-
13
-
-
33646058032
-
A text-mining analysis of the human phenome
-
M.A. van Driel, J. Bruggeman, G. Vriend, H.G. Brunner and J.A. Leunissen, "A text-mining analysis of the human phenome," Eur J Hum Genet, vol. 14,2006, pp. 535-542.
-
(2006)
Eur J Hum Genet
, vol.14
, pp. 535-542
-
-
Van Driel, M.A.1
Bruggeman, J.2
Vriend, G.3
Brunner, H.G.4
Leunissen, J.A.5
-
14
-
-
38549151817
-
DrugBank: A knowledgebase for drugs, drug actions and drug targets
-
D.S. Wishart, C. Knox, A.C. Guo, D. Cheng, S. Shrivastava, D. Tzur, B. Gautam and M. Hassanali, "DrugBank: a knowledgebase for drugs, drug actions and drug targets," Nucleic Acids Res, vol. 36, 2008, pp. D901-D906.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Wishart, D.S.1
Knox, C.2
Guo, A.C.3
Cheng, D.4
Shrivastava, S.5
Tzur, D.6
Gautam, B.7
Hassanali, M.8
-
15
-
-
0023965741
-
SMILES, a chemical language and information system. 1. Introduction to methodology and encoding rules
-
D. Weininger, "SMILES, a chemical language and information system. 1. Introduction to methodology and encoding rules," J Chern Inf Comput Sci, vol. 28, 1988, pp. 31-36.
-
(1988)
J Chern Inf Comput Sci
, vol.28
, pp. 31-36
-
-
Weininger, D.1
-
16
-
-
33745135773
-
Recent developments of the chemistry development kit (CDK) - An open-source java library for chemo- and bioinformatics
-
C. Steinbeck, C. Hoppe, S. Kuhn, M. Floris, R. Guha and E.L. Willighagen, "Recent developments of the chemistry development kit (CDK) - an open-source java library for chemo- and bioinformatics," Curr Phann Des, vol. 12,2006, pp. 2111-2120.
-
(2006)
Curr Phann des
, vol.12
, pp. 2111-2120
-
-
Steinbeck, C.1
Hoppe, C.2
Kuhn, S.3
Floris, M.4
Guha, R.5
Willighagen, E.L.6
-
18
-
-
33747853260
-
APID: Agile protein interaction data analyzer
-
C. Prieto and J. De Las Rivas, "APID: agile protein interaction data analyzer," Nucleic Acids Research, vol. 34(Web Server issue), 2006, pp. W298-302.
-
(2006)
Nucleic Acids Research
, vol.34
, Issue.WEB SERVER ISSUE
-
-
Prieto, C.1
De Las Rivas, J.2
-
19
-
-
41549139527
-
Walking the interactome for prioritization of candidate disease genes
-
S. Kohler, S. Bauer, D. Hom, P.N. Robinson, "Walking the interactome for prioritization of candidate disease genes," The American Journal of Human Genetics, vol. 82, no. 4, 2008, pp. 949958.
-
(2008)
The American Journal of Human Genetics
, vol.82
, Issue.4
, pp. 949958
-
-
Kohler, S.1
Bauer, S.2
Hom, D.3
Robinson, P.N.4
-
21
-
-
18744372602
-
Link fusion: A unified link analysis framework for multi-type interrelated data objects
-
W. Xi, B. Zhang, Z. Chen, Y. Lu, S. Yan, W.Y. Ma and E.A. Fox, "Link fusion: a unified link analysis framework for multi-type interrelated data objects," World Wide Web Conference Series WWW, 2004, pp. 319-327.
-
World Wide Web Conference Series WWW, 2004
, pp. 319-327
-
-
Xi, W.1
Zhang, B.2
Chen, Z.3
Lu, Y.4
Yan, S.5
Ma, W.Y.6
Fox, E.A.7
-
22
-
-
0017241061
-
Citation influence for journal aggregates of scientific publications: Theory, with application to the literature of physics
-
G. Pinski and N. Narin, "Citation influence for journal aggregates of scientific publications: Theory, with application to the literature of physics," Information Process and Management, vol. 12, 1976, pp. 297-312.
-
(1976)
Information Process and Management
, vol.12
, pp. 297-312
-
-
Pinski, G.1
Narin, N.2
-
23
-
-
22944492898
-
Learning with local and global consistency
-
D. Zhou, J. Weston, A. Gretton, O. Bousquet, and B. Scholkopf, "Learning with local and global consistency," In NIPS, vol. 16,2004, pp. 321-328.
-
(2004)
NIPS
, vol.16
, pp. 321-328
-
-
Zhou, D.1
Weston, J.2
Gretton, A.3
Bousquet, O.4
Scholkopf, B.5
-
24
-
-
78049437880
-
Use of data-biased random walks on graphs for the retrieval of context-specific networks from genomic data
-
K. Komurov, M.A. White and P.T. Ram1, "Use of data-biased random walks on graphs for the retrieval of context-specific networks from genomic data," PLoS Comput BioI., vol. 6, no. 8, 2010, pp. e1000889.
-
(2010)
PLoS Comput BioI.
, vol.6
, Issue.8
-
-
Komurov, K.1
White, M.A.2
Ram, P.T.3
-
25
-
-
9144251970
-
Gene expression profiling identifies clinically relevant subtypes of prostate cancer
-
J. Lapointe, C. Li, J.P. Higgins, M. van-de-Rijn, E. Bair, K. Montgomery, et al., "Gene expression profiling identifies clinically relevant subtypes of prostate cancer," In Proceedings of the National Academy of Sciences USA, vol. 101, no. 3,2004, pp. 811-816.
-
(2004)
Proceedings of the National Academy of Sciences USA
, vol.101
, Issue.3
, pp. 811-816
-
-
Lapointe, J.1
Li, C.2
Higgins, J.P.3
Van-de-Rijn, M.4
Bair, E.5
Montgomery, K.6
-
26
-
-
0035175010
-
The stanford micro array database
-
G. Sherlock, T. Hernandez-Boussard, A. Kasarskis, G. Binkley, J.C. Matese, S.S. Dwight, and et al., "The stanford micro array database," Nucleic Acids Research, vol. 29,2001, pp. 152-155.
-
(2001)
Nucleic Acids Research
, vol.29
, pp. 152-155
-
-
Sherlock, G.1
Hernandez-Boussard, T.2
Kasarskis, A.3
Binkley, G.4
Matese, J.C.5
Dwight, S.S.6
-
27
-
-
0034490080
-
Arsenic Trioxide-mediated Cytotoxicity and Apoptosis in Prostate and Ovarian Carcinoma Cell Lines
-
R. Uslu, UA. Sanli, C. Sezgin, B. Karabulut, E. Terzioglu, S.B. Omay and E. Goker, "Arsenic Trioxide-mediated Cytotoxicity and Apoptosis in Prostate and Ovarian Carcinoma Cell Lines," Clin Cancer Res., vol. 6, no. 12, 2000, pp. 4957-64.
-
(2000)
Clin Cancer Res.
, vol.6
, Issue.12
, pp. 4957-4964
-
-
Uslu, R.1
Sanli, U.A.2
Sezgin, C.3
Karabulut, B.4
Terzioglu, E.5
Omay, S.B.6
Goker, E.7
-
28
-
-
0035879016
-
Tumor growth inhibition by arsenic trioxide (As20 3) in the orthotopic metastasis model of androgen-independent prostate cancer
-
H. Maeda, S. Hori, H. Nishitoh, H. Ichijo, O. Ogawa, Y. Kakehi and A. Kakizuka, "Tumor growth inhibition by arsenic trioxide (As20 3) in the orthotopic metastasis model of androgen-independent prostate cancer," Cancer Res., vol. 61, no. 14, 2001, pp. 5432-40.
-
(2001)
Cancer Res.
, vol.61
, Issue.14
, pp. 5432-5440
-
-
Maeda, H.1
Hori, S.2
Nishitoh, H.3
Ichijo, H.4
Ogawa, O.5
Kakehi, Y.6
Kakizuka, A.7
-
29
-
-
84862804815
-
A pathway profile-based method for drug repositioning
-
H. Ye, L.L. Yang, Z.W. Cao, K.L. Tang and Y.X. Li, "A pathway profile-based method for drug repositioning," Chinese Science Bulletin, vol. 57, 2012.
-
Chinese Science Bulletin
, vol.57
, pp. 2012
-
-
Ye, H.1
Yang, L.L.2
Cao, Z.W.3
Tang, K.L.4
Li, Y.X.5
-
30
-
-
1542510038
-
Doxycycline and other tetracyclines in the treatment of bone metastasis
-
Z. Saikali and G. Singh, "Doxycycline and other tetracyclines in the treatment of bone metastasis," Anticancer Drugs, vol. 14, no. 10, 2003, pp. 773-8.
-
(2003)
Anticancer Drugs
, vol.14
, Issue.10
, pp. 773-778
-
-
Saikali, Z.1
Singh, G.2
-
31
-
-
69149084971
-
Adjuvant therapy with oral sodium clodronate in locally advanced and metastatic prostate cancer: Long-term overall survival results from the MRC PR04 and PR05 randomized controlled trials
-
D.P. Dearnaley, M.D. Mason, M.K. Parmar, K. Sanders and M.R. Sydes, "Adjuvant therapy with oral sodium clodronate in locally advanced and metastatic prostate cancer: long-term overall survival results from the MRC PR04 and PR05 randomized controlled trials," Lancet Oncol. vol. 10, no. 9,2009, pp. 872-6.
-
(2009)
Lancet Oncol.
, vol.10
, Issue.9
, pp. 872-876
-
-
Dearnaley, D.P.1
Mason, M.D.2
Parmar, M.K.3
Sanders, K.4
Sydes, M.R.5
-
32
-
-
67649970221
-
Melatonin induces apoptotic death in LNCaP cells via p38 and JNK pathways: Therapeutic implications for prostate cancer
-
S.S. Joo and Y.M. Yoo, "Melatonin induces apoptotic death in LNCaP cells via p38 and JNK pathways: therapeutic implications for prostate cancer," J Pineal Res., vol. 47, no. 1, 2009, pp. 8-14.
-
(2009)
J Pineal Res.
, vol.47
, Issue.1
, pp. 8-14
-
-
Joo, S.S.1
Yoo, Y.M.2
-
33
-
-
79951632056
-
Melatonin, a novel Sirt1 inhibitor, imparts Antiproliferative effects against prostate cancer in vitro in culture and in vivo in TRAMP model
-
B. Jung-Hynes, T.L. Schmit, S.R. Reagan-Shaw, LA. Siddiqui, H. Mukhtar and N. Ahmad, "Melatonin, a novel Sirt1 inhibitor, imparts Antiproliferative effects against prostate cancer in vitro in culture and in vivo in TRAMP model," J Pineal Res., vol. 50, no. 2, 2011, pp.140-149.
-
(2011)
J Pineal Res.
, vol.50
, Issue.2
, pp. 140-149
-
-
Jung-Hynes, B.1
Schmit, T.L.2
Reagan-Shaw, S.R.3
Siddiqui, L.A.4
Mukhtar, H.5
Ahmad, N.6
-
34
-
-
63749124982
-
A phase II trial of lapatinib in hormone refractory prostate cancer
-
Y.E. Whang, C.N. Moore, A.J. Armstrong, W.K. Rathmell, P.A. Godley, J.M. Crane, and et al., "A phase II trial of lapatinib in hormone refractory prostate cancer," J Clin Oncol, vol. 26, 2008
-
(2008)
J Clin Oncol
, vol.26
-
-
Whang, Y.E.1
Moore, C.N.2
Armstrong, A.J.3
Rathmell, W.K.4
Godley, P.A.5
Crane, J.M.6
-
35
-
-
40749122148
-
A phase II clinical trial of Sorafenib in androgenindependent prostate cancer
-
W.L. Dahut, C. Scripture, E. Posadas, L. Jain, J.L. Gulley, P.M. Arlen, and et al., "A phase II clinical trial of Sorafenib in androgenindependent prostate cancer," Clin Cancer Res., vol. 14, no. 1, 2008, pp.209-14.
-
(2008)
Clin Cancer Res.
, vol.14
, Issue.1
, pp. 209-214
-
-
Dahut, W.L.1
Scripture, C.2
Posadas, E.3
Jain, L.4
Gulley, J.L.5
Arlen, P.M.6
-
36
-
-
68449088145
-
Human disease-drug network based on genomic expression profiles
-
G. Hu and P. Agarwal, "Human disease-drug network based on genomic expression profiles," PLoS ONE, vol. 4, no. 8, 2009, pp. e6536.
-
(2009)
PLoS ONE
, vol.4
, Issue.8
-
-
Hu, G.1
Agarwal, P.2
|