Distribution-based classification method for baseline correction of metabolomic 1D proton nuclear magnetic resonance spectra

Analytical Chemistry

Volumn 85, Issue 2, 2013, Pages 1231-1239

  Wang, Kuo Ching ^a,b,c,d   Wang, San Yuan ^a   Kuo, Ching Hua ^a   Tseng, Yufeng J ^a  

^a NATIONAL TAIWAN UNIVERSITY   (Taiwan)

^b FU JEN CATHOLIC UNIVERSITY   (Taiwan)

^c TAIPEI MEDICAL UNIVERSITY   (Taiwan)

^d SHIN KONG WU HO SU MEMORIAL HOSPITAL   (Taiwan)

Author keywords

[No Author keywords available]

Indexed keywords

ALTERNATIVE METHODS; BASELINE CORRECTION; BIOFLUIDS; CHI-SQUARED DISTRIBUTION; CLASSIFICATION METHODS; CLASSIFICATION MODELS; FILTER TUNING; INDIVIDUAL COMPONENTS; METABOLOMICS; MOVING WINDOW; NMR DATA; NMR SPECTRUM; NOISE DISTRIBUTION; OPTIMAL PARAMETER; OVERLAPPING PEAKS; PROTON NUCLEAR MAGNETIC RESONANCE; PULSE SEQUENCE; SPECTRAL INTENSITY; STANDARD DEVIATION; UNIVERSAL PROPERTIES;

NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PROBABILITY DISTRIBUTIONS;

STATISTICS;

PROTON;

ALGORITHM; ARTICLE; BODY FLUID; CHEMISTRY; HUMAN; METABOLISM; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; TUMOR CELL LINE;

ALGORITHMS; BODY FLUIDS; CELL LINE, TUMOR; HUMANS; MAGNETIC RESONANCE SPECTROSCOPY; PROTONS;

EID: 84872554252     PISSN: 00032700     EISSN: 15206882     Source Type: Journal    
DOI: 10.1021/ac303233c     Document Type: Article

References (34)

1. Lindon, J. C.; Holmes, E.; Nicholson, J. K. Expert. Rev. Mol. Diagn. 2004, 4, 189-199
2. Beckonert, O.; Keun, H. C.; Ebbels, T. M.; Bundy, J.; Holmes, E.; Lindon, J. C.; Nicholson, J. K. Nat. Protoc. 2007, 2, 2692-2703
3. Zhang, S.; Nagana Gowda, G. A.; Asiago, V.; Shanaiah, N.; Barbas, C.; Raftery, D. Anal. Biochem. 2008, 383, 76-84
4. Yang, Y.; Li, C.; Nie, X.; Feng, X.; Chen, W.; Yue, Y.; Tang, H.; Deng, F. J. Proteome Res. 2007, 6, 2605-2614
5. Weljie, A. M.; Newton, J.; Mercier, P.; Carlson, E.; Slupsky, C. M. Anal. Chem. 2006, 78, 4430-4442
6. Nicholson, J. K.; Lindon, J. C.; Holmes, E. Xenobiotica 1999, 29, 1181-1189
7. Nicholson, J. K.; Wilson, I. D. Nat. Rev. Drug Discovery 2003, 2, 668-676
8. Clayton, T. A.; Lindon, J. C.; Cloarec, O.; Antti, H.; Charuel, C.; Hanton, G.; Provost, J. P.; Le Net, J. L.; Baker, D.; Walley, R. J.; Everett, J. R.; Nicholson, J. K. Nature 2006, 440, 1073-1077
9. Claudino, W. M.; Quattrone, A.; Biganzoli, L.; Pestrin, M.; Bertini, I.; Di Leo, A. J. Clin. Oncol. 2007, 25, 2840-2846
10. Lewis, G. D.; Asnani, A.; Gerszten, R. E. J. Am. Coll. Cardiol. 2008, 52, 117-123
11. Hughesa, D. G.; Lindblomb, G. J. Magn. Reson. 1977, 26, 469-479
12. Zau, G.; Torchia, D. A.; Bax, A. J. Magn. Reson. Ser. A 1993, 105, 219-222
13. Marion, D.; Bax, A. J. Magn. Reson. 1988, 79, 352-356
14. Heuer, A.; Haeberlen, U. J. Magn. Reson. 1989, 85, 79-84
15. Tang, C. J. Magn. Reson. 1994, 109, 232-240
16. Pearson, G. A. J. Magn. Reson. 1977, 27, 265-272
17. Dietrich, W.; Rudel, C. H.; Neumann, M. J. Magn. Reson. 1991, 91, 1-11
18. Cobas, J. C.; Bernstein, M. A.; Martin-Pastor, M.; Tahoces, P. G. J. Magn. Reson. 2006, 183, 145-151
19. Golotvin, S.; Williams, A. J. Magn. Reson. 2000, 146, 122-125
20. Xi, Y.; Rocke, D. M. BMC Bioinf. 2008, 9, 324
21. Chang, D.; Banack, C. D.; Shah, S. L. J. Magn. Reson. 2007, 187, 288-292
22. Bartels, C.; Güntert, P.; Wüthrich, K. J. Magn. Reson. Ser. A 1995, 117, 330-333
23. Guntert, P.; Wuthrich, K. J. Magn. Reson. 1992, 96, 403-407
24. Brown, D. E. J. Magn. Reson. Ser. A 1995, 114, 268-270
25. Wang, T.; Shao, K.; Chu, Q.; Ren, Y.; Mu, Y.; Qu, L.; He, J.; Jin, C.; Xia, B. BMC Bioinf. 2009, 10, 83
26. Izquierdo-Garcia, J. L.; Rodriguez, I.; Kyriazis, A.; Villa, P.; Barreiro, P.; Desco, M.; Ruiz-Cabello, J. BMC Bioinf. 2009, 10, 363
27. Zhang, Z. M.; Chen, S.; Liang, Y. Z. Analyst 2010, 135, 1138-1146
28. Bao, Q.; Feng, J.; Chen, F.; Mao, W.; Liu, Z.; Liu, K.; Liu, C. J. Magn. Reson. 2012, 218, 35-43
29. http://www.inmr.net.
30. Liu, M.; Nicholson, J. K.; Lindon, J. C. Anal. Chem. 1996, 68, 3370-3376
31. Rocke, D. M.; Lorenzato, S. Technometrics 1995, 37, 176-184
32. Wishart, D. S.; Tzur, D.; Knox, C.; Eisner, R.; Guo, A. C.; Young, N.; Cheng, D.; Jewell, K.; Arndt, D.; Sawhney, S.; Fung, C.; Nikolai, L.; Lewis, M.; Coutouly, M. A.; Forsythe, I.; Tang, P.; Shrivastava, S.; Jeroncic, K.; Stothard, P.; Amegbey, G.; Block, D.; Hau, D. D.; Wagner, J.; Miniaci, J.; Clements, M.; Gebremedhin, M.; Guo, N.; Zhang, Y.; Duggan, G. E.; Macinnis, G. D.; Weljie, A. M.; Dowlatabadi, R.; Bamforth, F.; Clive, D.; Greiner, R.; Li, L.; Marrie, T.; Sykes, B. D.; Vogel, H. J.; Querengesser, L. Nucleic Acids Res. 2007, 35, D521-526
33. Wishart, D. S.; Knox, C.; Guo, A. C.; Eisner, R.; Young, N.; Gautam, B.; Hau, D. D.; Psychogios, N.; Dong, E.; Bouatra, S.; Mandal, R.; Sinelnikov, I.; Xia, J.; Jia, L.; Cruz, J. A.; Lim, E.; Sobsey, C. A.; Shrivastava, S.; Huang, P.; Liu, P.; Fang, L.; Peng, J.; Fradette, R.; Cheng, D.; Tzur, D.; Clements, M.; Lewis, A.; De Souza, A.; Zuniga, A.; Dawe, M.; Xiong, Y.; Clive, D.; Greiner, R.; Nazyrova, A.; Shaykhutdinov, R.; Li, L.; Vogel, H. J.; Forsythe, I. Nucleic Acids Res. 2009, 37, D603-610
34. Adams, M. J. Chemometrics in Analytical Spectroscopy, 2 nd ed.; Royal Society of Chemistry: Cambridge, U.K., 2004; p 34.