Paenibacillus thermophilus sp. nov., a novel bacterium isolated from a sediment of hot spring in Fujian province, China

Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology

Volumn 102, Issue 4, 2012, Pages 601-609

  Zhou, Yu ^a   Gao, Sheng ^b   Wei, Da Qiao ^c   Yang, Ling Ling ^b   Huang, Xing ^d   He, Jie ^b   Zhang, Yun Jiao ^b   Tang, Shu Kun ^b   Li, Wen Jun ^b,e  

^a INSTITUTE OF PLANT PROTECTION AND MICROBIOLOGY   (China)

^b YUNNAN UNIVERSITY   (China)

^c KUNMING UNIVERSITY OF SCIENCE AND TECHNOLOGY   (China)

^d NANJING AGRICULTURAL UNIVERSITY   (China)

^e XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY   (China)

Author keywords

16S rRNA gene; Paenibacillus thermophilus; Polyphasic taxonomy; Thermophilic

Indexed keywords

BACTERIAL DNA; DIAMINOPIMELIC ACID; FARNOQUINONE; FATTY ACID; PEPTIDOGLYCAN; PHOSPHOLIPID; RIBOSOME DNA; RNA 16S; SODIUM CHLORIDE;

AEROBIC METABOLISM; ARTICLE; BACTERIAL SPORE; BACTERIUM IDENTIFICATION; CHEMISTRY; CHINA; CLASSIFICATION; CLUSTER ANALYSIS; CYTOLOGY; DNA SEQUENCE; FLAGELLUM; GENETICS; ISOLATION AND PURIFICATION; LOCOMOTION; METABOLISM; MICROBIOLOGY; MOLECULAR GENETICS; NUCLEIC ACID HYBRIDIZATION; PAENIBACILLUS; PH; PHYLOGENY; PHYSIOLOGY; SEDIMENT; TEMPERATURE; THERMAL SPRING;

AEROBIOSIS; BACTERIAL TYPING TECHNIQUES; CHINA; CLUSTER ANALYSIS; DIAMINOPIMELIC ACID; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; FLAGELLA; GEOLOGIC SEDIMENTS; HOT SPRINGS; HYDROGEN-ION CONCENTRATION; LOCOMOTION; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PAENIBACILLUS; PEPTIDOGLYCAN; PHOSPHOLIPIDS; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SODIUM CHLORIDE; SPORES, BACTERIAL; TEMPERATURE; VITAMIN K 2;

EID: 84872438244     PISSN: 00036072     EISSN: 15729699     Source Type: Journal    
DOI: 10.1007/s10482-012-9755-6     Document Type: Article

References (35)

1. Ash C, Priest FG, CollinsMD(1993) Molecular identification of rRNA group 3 bacilli (Ash, Farrow, Wallbanks and Collins) using a PCR probe test (Proposal for the creation of a new genus Paenibacillus). Antonie Van Leeuwenhoek 64:253-260
2. Behrendt U, Schumann P, Stieglmeier M, Pukall R, Augustin J, Spröer C, Schwendner P, Moissl-Eichinger C, Ulrich A (2010) Characterization of heterotrophic nitrifying bacteria with respiratory ammonification and denitrification activity-description of Paenibacillus uliginis sp. nov., an inhabitant of fen peat soil and Paenibacillus purispatii sp. nov., isolated from a spacecraft assembly clean room. Syst Appl Microbiol 33:328-336
3. Benardini JN, Vaishampayan PA, Schwendner P, Swanner E, Fukui Y, Osman S, Satomi M, Venkateswaran K (2011) Paenibacillus phoenicis sp. nov., isolated from the Phoenix Lander assembly facility and a subsurface molybdenum mine. Int J Syst Evol Microbiol 61:1338-1343
4. Cerny G (1978) Studies on aminopeptidase for the distinction of Gram-negative from Gram-positive bacteria. Eur J Appl Microbiol Biotechnol 5:113-122
5. Chun J, Lee JH, Jung Y, Kim M, Kim S, Kim BK, Lim YW (2007) EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol 57:2259-2261
6. Collins MD, Pirouz T, Goodfellow M, Minnikin DE (1977) Distribution of menaquinones in actinomycetes and corynebacteria. J Gen Microbiol 100:221-230
7. Cowan ST, Steel KJ (1965) Manual for the Identification of Medical Bacteria. Cambridge University Press, London Cui XL, Mao PH, Zeng M, Li WJ, Zhang LP, Xu LH, Jiang CL (2001) Streptimonospora salina gen. nov., sp. nov., a new member of the family Nocardiopsaceae. Int J Syst Evol Microbiol 51:357-363
8. Ezaki T, Hashimoto Y, Yabuuchi E (1989) Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39:224-229
9. Felsenstein J (1981) Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17:368-376
10. Felsenstein J (1985) Conference limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791
11. Fitch WM (1971) Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20:406-416
12. Heyndrickx M, Vandemeulebroecke K, Scheldeman P, Kersters K, De Vos P, Logan NA, Aziz AM, Ali N, Berkeley RCW (1996) A polyphasic reassessment of the genus Paenibacillus, reclassification of Bacillus lautus (Nakamura 1984) as Paenibacillus lautus comb. nov. and of Bacillus peoriae (Montefusco et al. 1993) as Paenibacillus peoriae comb. nov., and emended descriptions of P. lautus and of P. peoriae. Int J Syst Bacteriol 46:988-1003
13. Kämpfer P, Falsen E, Lodders N, Martin K, Kassmannhuber J, Busse H-J (2011) Paenibacillus chartarius sp. nov. isolated from a papermill. Int J Syst Evol Microbiol. doi: 10.1099/ijs.0.035154-0
14. Khianngam S, Akaracharanya A, Tanasupawat S, Lee KC, Lee J-S (2009) Paenibacillus thailandensis sp. nov. and Paenibacillus nanensis sp. nov., xylanase-producing bacteria isolated from soil. Int J Syst Evol Microbiol 59:564-568
15. Komagata K, Suzuki K (1987) Lipids and cell-wall analysis in bacterial systematics. Methods Microbiol 19:161-207
16. Kroppenstedt RM (1982) Separation of bacterial menaquinones by HPLC using reverse phase (RP 18) and a silver loaded ion exchanger as stationary phases. J Liquid Chromatogr 5:2359-2387
17. Lee M, Ten LN, Baek S-H, Im W-T, Aslam Z, Lee S-T (2007) Paenibacillus ginsengisoli sp. nov., a novel bacterium isolated from soil of a ginseng field in Pocheon province, South Korea. Antonie van Leeuwenhoek 91:127-135
18. Leifson E (1960) Atlas of Bacterial Flagellation. Academic Press, London
19. Logan NA, Clerck ED, Lebbe L, Verhelst A, Goris J, Forsyth G, Rodríguez-Díaz M, Heyndrickx M, De Vos P (2004) Paenibacillus cineris sp. nov. and Paenibacillus cookii sp. nov., from Antarctic volcanic soils and a gelatin-processing plant. Int J Syst Evol Microbiol 54:1071-1076
20. Logan NA, Berge O, Bishop AH, Busse H-J, De Vos P, Fritze D, Heyndrickx M, Kämpfer P, Rabinovitch L, Salkinoja-Salonen MS, Seldin L, Ventosa A (2009) Proposed minimal standards for describing new taxa of aerobic, endosporeforming bacteria. Int J Syst Evol Microbiol 59:2114-2121
21. Marmur J (1961) A procedure for the isolation of deoxyribonucleic acid from microorganisms. J Mol Biol 3:208-218
22. Mesbah M, Premachandran U, Whitman WB (1989) Precise measurement of the G ? C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39:159-167
23. Minnikin DE, O'Donnell AG, Goodfellow M, Alderson G, Athalye M, Schaal A, Parlett JH (1984) An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2:233-241
24. Osman S, Satomi M, Venkateswaran K (2006) Paenibacillus pasadenensis sp. nov. and Paenibacillus barengoltzii sp. nov., isolated from a spacecraft assembly facility. Int J Syst Evol Microbiol 56:1509-1514
25. Roux V, Raoult D (2004) Paenibacillus massiliensis sp. nov., Paenibacillus sanguinis sp. nov. and Paenibacillus timonensis sp. nov., isolated from blood cultures. Int J Syst Evol Microbiol 54:1049-1054
26. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
27. Skerman VBD (1967) A Guide to the Identification of the Genera of Bacteria, 2nd edn. Williams & Wilkins, Baltimore
28. Smibert RM, Krieg NR (1981) General characterization. In: Gerhardt P, Murray RGE, Costilow RN, Nester EW, Wood WA, Krieg NR, Philips GB (eds) Manual of methods for general bacteriology. American Society for Microbiology, Washington, DC, pp 409-443
29. Smibert RM, Krieg NR (1994) Phenotypic characterization. In: Gerhardt P, Murray RGE, Wood WA, Krieg NR (eds) Methods for general and molecular bacteriology. American Society for Microbiology, Washington, DC, pp 607-654
30. Stackebrandt E, Goebel BM (1994) Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44:846-849
31. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28: 2731-2739
32. Tang SK, Tian XP, Zhi XY, Cai M, Wu JY, Yang LL, Xu LH, Li WJ (2008) Haloactinospora alba gen. nov., sp. nov., a halophilic filamentous actinomycete of the family Nocardiopsaceae. Int J Syst Evol Microbiol 58:2075-2080
33. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876-4882
34. Wang L, Baek S-H, Cui Y, Lee H-G, Lee S-T (2011) Paenibacillus sediminis sp. nov., a xylanolytic bacterium isolated from tidal flat adjacent to Ganghwa Island, Korea. Int J Syst Evol Microbiol. doi:10.1099/ijs.0.032102-0
35. Williams ST, Goodfellow M, Alderson G (1989) Genus Streptomyces Waksman and Henrici 1943, 339AL. In: Williams ST, Sharpe ME, Holt JG (eds) Bergey's manual of systematic bacteriology, vol 4. Williams &Wilkins, Baltimore, pp. 2463-2468