-
1
-
-
33847083318
-
Global transcription machinery engineering: a new approach for improving cellular phenotype
-
Alper H., Stephanopoulos G. Global transcription machinery engineering: a new approach for improving cellular phenotype. Metab. Eng. 2007, 9:258-267.
-
(2007)
Metab. Eng.
, vol.9
, pp. 258-267
-
-
Alper, H.1
Stephanopoulos, G.2
-
2
-
-
77950629484
-
Metabolite stress and tolerance in the production of biofuels and chemicals: gene-expression-based systems analysis of butanol, butyrate, and acetate stresses in the anaerobe Clostridium acetobutylicum
-
Alsaker K.V., Paredes C., Papoutsakis E.T. Metabolite stress and tolerance in the production of biofuels and chemicals: gene-expression-based systems analysis of butanol, butyrate, and acetate stresses in the anaerobe Clostridium acetobutylicum. Biotechnol. Bioeng. 2010, 105:1131-1147.
-
(2010)
Biotechnol. Bioeng.
, vol.105
, pp. 1131-1147
-
-
Alsaker, K.V.1
Paredes, C.2
Papoutsakis, E.T.3
-
3
-
-
1642324901
-
Transcriptional analysis of spo0A overexpression in Clostridium acetobutylicum and its effect on the cell's response to butanol stress
-
Alsaker K.V., Spitzer T.R., Papoutsakis E.T. Transcriptional analysis of spo0A overexpression in Clostridium acetobutylicum and its effect on the cell's response to butanol stress. J. Bacteriol. 2004, 186:1959-1971.
-
(2004)
J. Bacteriol.
, vol.186
, pp. 1959-1971
-
-
Alsaker, K.V.1
Spitzer, T.R.2
Papoutsakis, E.T.3
-
4
-
-
0032142728
-
Improvement of organic solvent tolerance level of Escherichia coli by overexpression of stress-responsive genes
-
Aono R. Improvement of organic solvent tolerance level of Escherichia coli by overexpression of stress-responsive genes. Extremophiles 1998, 2:239-248.
-
(1998)
Extremophiles
, vol.2
, pp. 239-248
-
-
Aono, R.1
-
6
-
-
78650647970
-
Evolution, genomic analysis, and reconstruction of isobutanol tolerance in Escherichia coli
-
Atsumi S., Wu T.Y., Machado I.M.P., Huang W.C., Chen P.Y., Pellegrini M., Liao J.C. Evolution, genomic analysis, and reconstruction of isobutanol tolerance in Escherichia coli. Mol. Syst. Biol. 2010, 6:449.
-
(2010)
Mol. Syst. Biol.
, vol.6
, pp. 449
-
-
Atsumi, S.1
Wu, T.Y.2
Machado, I.M.P.3
Huang, W.C.4
Chen, P.Y.5
Pellegrini, M.6
Liao, J.C.7
-
7
-
-
0028898732
-
Quantitative structure-activity relationships for skin permeability
-
Barratt M.D. Quantitative structure-activity relationships for skin permeability. Toxicol. in Vitro 1995, 9:27-37.
-
(1995)
Toxicol. in Vitro
, vol.9
, pp. 27-37
-
-
Barratt, M.D.1
-
8
-
-
77950857795
-
A genomic-library based discovery of a novel, possibly synthetic, acid-tolerance mechanism in Clostridium acetobutylicum involving non-coding RNAs and ribosomal RNA processing
-
Borden J.R., Jones S.W., Indurthi D., Chen Y.L., Papoutsakis E.T. A genomic-library based discovery of a novel, possibly synthetic, acid-tolerance mechanism in Clostridium acetobutylicum involving non-coding RNAs and ribosomal RNA processing. Metab. Eng. 2010, 12:268-281.
-
(2010)
Metab. Eng.
, vol.12
, pp. 268-281
-
-
Borden, J.R.1
Jones, S.W.2
Indurthi, D.3
Chen, Y.L.4
Papoutsakis, E.T.5
-
9
-
-
34248196414
-
Dynamics of genomic-library enrichment and identification of solvent tolerance genes for Clostfidium acetobutylicum
-
Borden J.R., Papoutsakis E.T. Dynamics of genomic-library enrichment and identification of solvent tolerance genes for Clostfidium acetobutylicum. Appl. Environ. Microbiol. 2007, 73:3061-3068.
-
(2007)
Appl. Environ. Microbiol.
, vol.73
, pp. 3061-3068
-
-
Borden, J.R.1
Papoutsakis, E.T.2
-
10
-
-
67650685558
-
An integrated network approach identifies the isobutanol response network of Escherichia coli
-
Brynildsen M.P., Liao J.C. An integrated network approach identifies the isobutanol response network of Escherichia coli. Mol. Syst. Biol. 2009, 5:277.
-
(2009)
Mol. Syst. Biol.
, vol.5
, pp. 277
-
-
Brynildsen, M.P.1
Liao, J.C.2
-
11
-
-
34347374452
-
Chaperone-based procedure to increase yields of soluble recombinant proteins produced in E-coli
-
de Marco A., Deuerling E., Mogk A., Tomoyasu T., Bukau B. Chaperone-based procedure to increase yields of soluble recombinant proteins produced in E-coli. BMC Biotech. 2007, 7:32.
-
(2007)
BMC Biotech.
, vol.7
, pp. 32
-
-
de Marco, A.1
Deuerling, E.2
Mogk, A.3
Tomoyasu, T.4
Bukau, B.5
-
12
-
-
8144225912
-
Improved stress tolerance of GroESL-overproducing Lactococcus lactis and orobiotic Lactobacillus paracasei NFBC 338
-
Desmond C., Fitzgerald G.F., Stanton C., Ross R.P. Improved stress tolerance of GroESL-overproducing Lactococcus lactis and orobiotic Lactobacillus paracasei NFBC 338. Appl. Environ. Microbiol. 2004, 70:5929-5936.
-
(2004)
Appl. Environ. Microbiol.
, vol.70
, pp. 5929-5936
-
-
Desmond, C.1
Fitzgerald, G.F.2
Stanton, C.3
Ross, R.P.4
-
13
-
-
80053172430
-
Engineering microbes for tolerance to next-generation biofuels
-
Dunlop M.J. Engineering microbes for tolerance to next-generation biofuels. Biotechnol. Biofuels 2011, 4:32.
-
(2011)
Biotechnol. Biofuels
, vol.4
, pp. 32
-
-
Dunlop, M.J.1
-
14
-
-
79955806186
-
Engineering microbial biofuel tolerance and export using efflux pumps
-
Dunlop M.J., Dossani Z.Y., Szmidt H.L., Chu H.C., Lee T.S., Keasling J.D., Hadi M.Z., Mukhopadhyay A. Engineering microbial biofuel tolerance and export using efflux pumps. Mol. Syst. Biol. 2011, 7:487.
-
(2011)
Mol. Syst. Biol.
, vol.7
, pp. 487
-
-
Dunlop, M.J.1
Dossani, Z.Y.2
Szmidt, H.L.3
Chu, H.C.4
Lee, T.S.5
Keasling, J.D.6
Hadi, M.Z.7
Mukhopadhyay, A.8
-
15
-
-
77953237121
-
Regulatory and metabolic rewiring during laboratory evolution of ethanol tolerance in E. coli
-
Goodarzi H., Bennett B.D., Amini S., Reaves M.L., Hottes A.K., Rabinowitz J.D., Tavazoie S. Regulatory and metabolic rewiring during laboratory evolution of ethanol tolerance in E. coli. Mol. Syst. Biol. 2010, 6:378.
-
(2010)
Mol. Syst. Biol.
, vol.6
, pp. 378
-
-
Goodarzi, H.1
Bennett, B.D.2
Amini, S.3
Reaves, M.L.4
Hottes, A.K.5
Rabinowitz, J.D.6
Tavazoie, S.7
-
16
-
-
8644290874
-
A chaperone network controls the heat shock response in E-coli
-
Guisbert E., Herman C., Lu C.Z., Gross C.A. A chaperone network controls the heat shock response in E-coli. Genes Dev. 2004, 18:2812-2821.
-
(2004)
Genes Dev.
, vol.18
, pp. 2812-2821
-
-
Guisbert, E.1
Herman, C.2
Lu, C.Z.3
Gross, C.A.4
-
17
-
-
0024512944
-
A pseudomonas thrives in high-concentrations of toluene
-
Inoue A., Horikoshi K. A pseudomonas thrives in high-concentrations of toluene. Nature 1989, 338:264-266.
-
(1989)
Nature
, vol.338
, pp. 264-266
-
-
Inoue, A.1
Horikoshi, K.2
-
18
-
-
0032143971
-
Bacteria tolerant to organic solvents
-
Isken S., de Bont J.A.M. Bacteria tolerant to organic solvents. Extremophiles 1998, 2:229-238.
-
(1998)
Extremophiles
, vol.2
, pp. 229-238
-
-
Isken, S.1
de Bont, J.A.M.2
-
19
-
-
77956363625
-
Enhancing the 1-Butanol tolerance in Escherichia coli through repetitive proton beam irradiation
-
Jeong H., Han J. Enhancing the 1-Butanol tolerance in Escherichia coli through repetitive proton beam irradiation. J. Korean. Phys. Soc. 2010, 56:2041-2045.
-
(2010)
J. Korean. Phys. Soc.
, vol.56
, pp. 2041-2045
-
-
Jeong, H.1
Han, J.2
-
20
-
-
0031719418
-
Uptake and synthesis of compatible solutes as microbial stress responses to high-osmolality environments
-
Kempf B., Bremer E. Uptake and synthesis of compatible solutes as microbial stress responses to high-osmolality environments. Arch. Microbiol. 1998, 170:319-330.
-
(1998)
Arch. Microbiol.
, vol.170
, pp. 319-330
-
-
Kempf, B.1
Bremer, E.2
-
21
-
-
78649696298
-
Increased ethanol resistance in ethanolic Escherichia coli by insertion of heat-shock genes BEM1 and SOD2 from Saccharomyces cerevisiae
-
Lee S.J., Oh E.K., Oh Y.H., Won J.I., Han S.O., Lee J.W. Increased ethanol resistance in ethanolic Escherichia coli by insertion of heat-shock genes BEM1 and SOD2 from Saccharomyces cerevisiae. Biotechnol. Bioprocess. Eng. 2010, 15:770-776.
-
(2010)
Biotechnol. Bioprocess. Eng.
, vol.15
, pp. 770-776
-
-
Lee, S.J.1
Oh, E.K.2
Oh, Y.H.3
Won, J.I.4
Han, S.O.5
Lee, J.W.6
-
22
-
-
51649108629
-
Fermentative butanol production by clostridia
-
Lee S.Y., Park J.H., Jang S.H., Nielsen L.K., Kim J., Jung K.S. Fermentative butanol production by clostridia. Biotechnol. Bioeng. 2008, 101:209-228.
-
(2008)
Biotechnol. Bioeng.
, vol.101
, pp. 209-228
-
-
Lee, S.Y.1
Park, J.H.2
Jang, S.H.3
Nielsen, L.K.4
Kim, J.5
Jung, K.S.6
-
23
-
-
0026446168
-
High copy number of the Puc plasmid results from a rom Rop-suppressible point mutation in Rna-Ii
-
Lin-Chao S., Chen W.T., Wong T.T. High copy number of the Puc plasmid results from a rom Rop-suppressible point mutation in Rna-Ii. Molec. Microbiol. 1992, 6:3385-3393.
-
(1992)
Molec. Microbiol.
, vol.6
, pp. 3385-3393
-
-
Lin-Chao, S.1
Chen, W.T.2
Wong, T.T.3
-
24
-
-
73949105851
-
Improved ethanol tolerance in Escherichia coli by changing the cellular fatty acids composition through genetic manipulation
-
Luo L.H., Seo P.S., Seo J.W., Heo S.Y., Kim D.H., Kim C.H. Improved ethanol tolerance in Escherichia coli by changing the cellular fatty acids composition through genetic manipulation. Biotechnol. Lett 2009, 31:1867-1871.
-
(2009)
Biotechnol. Lett
, vol.31
, pp. 1867-1871
-
-
Luo, L.H.1
Seo, P.S.2
Seo, J.W.3
Heo, S.Y.4
Kim, D.H.5
Kim, C.H.6
-
25
-
-
67349171092
-
Protein folding in Escherichia coli: the chaperonin GroE and its substrates
-
Masters M., Blakely G., Coulson A., McLennan N., Yerko V., Acord J. Protein folding in Escherichia coli: the chaperonin GroE and its substrates. Res. Microbiol. 2009, 160:267-277.
-
(2009)
Res. Microbiol.
, vol.160
, pp. 267-277
-
-
Masters, M.1
Blakely, G.2
Coulson, A.3
McLennan, N.4
Yerko, V.5
Acord, J.6
-
26
-
-
79953069562
-
Evolution combined with genomic study elucidates genetic bases of isobutanol tolerance in Escherichia coli
-
18
-
Minty J.J., Lesnefsky A.A., Lin F.M., Chen Y., Zaroff T.A., Veloso A.B., Xie B., McConnell C.A., Ward R.J., Schwartz D.R., Rouillard J.M., Gao Y.A., Gulari E., Lin X.N. Evolution combined with genomic study elucidates genetic bases of isobutanol tolerance in Escherichia coli. Microb. Cell Factor 2011, 10. 18.
-
(2011)
Microb. Cell Factor
, pp. 10
-
-
Minty, J.J.1
Lesnefsky, A.A.2
Lin, F.M.3
Chen, Y.4
Zaroff, T.A.5
Veloso, A.B.6
Xie, B.7
McConnell, C.A.8
Ward, R.J.9
Schwartz, D.R.10
Rouillard, J.M.11
Gao, Y.A.12
Gulari, E.13
Lin, X.N.14
-
27
-
-
77953022341
-
A comparative view of metabolite and substrate stress and tolerance in microbial bioprocessing: from biofuels and chemicals, to biocatalysis and bioremediation
-
Nicolaou S.A., Gaida S.M., Papoutsakis E.T. A comparative view of metabolite and substrate stress and tolerance in microbial bioprocessing: from biofuels and chemicals, to biocatalysis and bioremediation. Metab. Eng. 2010, 12:307-331.
-
(2010)
Metab. Eng.
, vol.12
, pp. 307-331
-
-
Nicolaou, S.A.1
Gaida, S.M.2
Papoutsakis, E.T.3
-
28
-
-
83755224308
-
Coexisting/Coexpressing Genomic Libraries (CoGeL) identify interactions among distantly located genetic loci for developing complex microbial phenotypes
-
Nicolaou S.A., Gaida S.M., Papoutsakis E.T. Coexisting/Coexpressing Genomic Libraries (CoGeL) identify interactions among distantly located genetic loci for developing complex microbial phenotypes. Nucleic Acids Res. 2011, 39:e152.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Nicolaou, S.A.1
Gaida, S.M.2
Papoutsakis, E.T.3
-
29
-
-
0142183458
-
Microbial synthesis of the energetic material precursor 1,2,4-butanetriol
-
Niu W., Molefe M.N., Frost J.W. Microbial synthesis of the energetic material precursor 1,2,4-butanetriol. J. Am. Chem. Soc. 2003, 125:12998-12999.
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 12998-12999
-
-
Niu, W.1
Molefe, M.N.2
Frost, J.W.3
-
30
-
-
0025420133
-
Correlation of Biocatalytic Activity in an Organic Aqueous 2-Liquid Phase System with Solvent Concentration in the Cell-Membrane
-
Osborne S.J., Leaver J., Turner M.K., Dunnill P. Correlation of Biocatalytic Activity in an Organic Aqueous 2-Liquid Phase System with Solvent Concentration in the Cell-Membrane. Enzyme Microb. Technol. 1990, 12:281-291.
-
(1990)
Enzyme Microb. Technol.
, vol.12
, pp. 281-291
-
-
Osborne, S.J.1
Leaver, J.2
Turner, M.K.3
Dunnill, P.4
-
31
-
-
53049086510
-
Engineering solventogenic clostridia
-
Papoutsakis E.T. Engineering solventogenic clostridia. Curr. Opin. Biotechnol. 2008, 19:420-429.
-
(2008)
Curr. Opin. Biotechnol.
, vol.19
, pp. 420-429
-
-
Papoutsakis, E.T.1
-
32
-
-
0036405482
-
Mechanisms of solvent tolerance in gram-negative bacteria
-
Ramos J.L., Duque E., Gallegos M.T., Godoy P., Ramos-Gonzalez M.I., Rojas A., Teran W., Segura A. Mechanisms of solvent tolerance in gram-negative bacteria. Annu. Rev. Microbiol. 2002, 56:743-768.
-
(2002)
Annu. Rev. Microbiol.
, vol.56
, pp. 743-768
-
-
Ramos, J.L.1
Duque, E.2
Gallegos, M.T.3
Godoy, P.4
Ramos-Gonzalez, M.I.5
Rojas, A.6
Teran, W.7
Segura, A.8
-
33
-
-
33846649486
-
Enhanced ethanol fermentation of brewery wastewater using the genetically modified strain E-coli KO11
-
Rao K., Chaudhari V., Varanasi S., Kim D.S. Enhanced ethanol fermentation of brewery wastewater using the genetically modified strain E-coli KO11. Appl. Microbiol. Biotechnol. 2007, 74:50-60.
-
(2007)
Appl. Microbiol. Biotechnol.
, vol.74
, pp. 50-60
-
-
Rao, K.1
Chaudhari, V.2
Varanasi, S.3
Kim, D.S.4
-
34
-
-
79952432805
-
Genomic library screens for genes involved in n-butanol tolerance in Escherichia coli
-
Reyes L.H., Almario M.P., Kao K.C. Genomic library screens for genes involved in n-butanol tolerance in Escherichia coli. PLoS One 2011, 6:e17678.
-
(2011)
PLoS One
, vol.6
-
-
Reyes, L.H.1
Almario, M.P.2
Kao, K.C.3
-
35
-
-
0003903343
-
Molecular cloning: a laboratory manual
-
2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.
-
Sambrook, J.F., Fritsch, E.F., Maniatis, T., 1989. Molecular cloning: a laboratory manual, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.
-
(1989)
-
-
Sambrook, J.F.1
Fritsch, E.F.2
Maniatis, T.3
-
36
-
-
84942048668
-
Octanol-Water partition-coefficients of simple organic-compounds
-
Sangster J. Octanol-Water partition-coefficients of simple organic-compounds. J. Phys. Chem. Ref. Data 1989, 18:1111-1229.
-
(1989)
J. Phys. Chem. Ref. Data
, vol.18
, pp. 1111-1229
-
-
Sangster, J.1
-
37
-
-
1642396325
-
Transcriptional analysis of butanol stress and tolerance in Clostridium acetobutylicum
-
Tomas C.A., Beamish J., Papoutsakis E.T. Transcriptional analysis of butanol stress and tolerance in Clostridium acetobutylicum. J. Bacteriol. 2004, 186:2006-2018.
-
(2004)
J. Bacteriol.
, vol.186
, pp. 2006-2018
-
-
Tomas, C.A.1
Beamish, J.2
Papoutsakis, E.T.3
-
38
-
-
0041527249
-
Overexpression of groESL in Clostridium acetobutylicum results in increased solvent production and tolerance, prolonged metabolism, and changes in the cell's transcriptional program
-
Tomas C.A., Welker N.E., Papoutsakis E.T. Overexpression of groESL in Clostridium acetobutylicum results in increased solvent production and tolerance, prolonged metabolism, and changes in the cell's transcriptional program. Appl. Environ. Microbiol. 2003, 69:4951-4965.
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 4951-4965
-
-
Tomas, C.A.1
Welker, N.E.2
Papoutsakis, E.T.3
-
39
-
-
0035029482
-
Genetic dissection of the roles of chaperones and proteases in protein folding and degradation in the Escherichia coli cytosol
-
Tomoyasu T., Mogk A., Langen H., Goloubinoff P., Bukau B. Genetic dissection of the roles of chaperones and proteases in protein folding and degradation in the Escherichia coli cytosol. Mol. Microbiol. 2001, 40:397-413.
-
(2001)
Mol. Microbiol.
, vol.40
, pp. 397-413
-
-
Tomoyasu, T.1
Mogk, A.2
Langen, H.3
Goloubinoff, P.4
Bukau, B.5
-
40
-
-
79960975845
-
Transcriptional analysis of lactobacillus brevis to N-butanol and ferulic acid stress responses
-
Winkler J., Kao K.C. Transcriptional analysis of lactobacillus brevis to N-butanol and ferulic acid stress responses. PLoS One 2011, 6:e21438.
-
(2011)
PLoS One
, vol.6
-
-
Winkler, J.1
Kao, K.C.2
-
41
-
-
79955009094
-
Novel reference genes for quantifying transcriptional responses of Escherichia coli to protein overexpression by quantitative PCR.
-
Zhou K., Zhou L.H., Lim Q.E., Zou R.Y., Stephanopoulos G., Too H.P. Novel reference genes for quantifying transcriptional responses of Escherichia coli to protein overexpression by quantitative PCR. BMC Mol. Biol. 2011, 12:18.
-
(2011)
BMC Mol. Biol.
, vol.12
, pp. 18
-
-
Zhou, K.1
Zhou, L.H.2
Lim, Q.E.3
Zou, R.Y.4
Stephanopoulos, G.5
Too, H.P.6
|