-
1
-
-
77955233623
-
Transposases are the most abundant, most ubiquitous genes in nature
-
Aziz R.K., Breitbart M., Edwards R.A. Transposases are the most abundant, most ubiquitous genes in nature. Nucleic Acids Res 2010, 38:4207-4217.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 4207-4217
-
-
Aziz, R.K.1
Breitbart, M.2
Edwards, R.A.3
-
2
-
-
77956364248
-
Mobile DNA and evolution in the 21st century
-
Shapiro J.A. Mobile DNA and evolution in the 21st century. Mob DNA 2010, 1:4.
-
(2010)
Mob DNA
, vol.1
, pp. 4
-
-
Shapiro, J.A.1
-
3
-
-
77249135986
-
Integrating prokaryotes and eukaryotes: DNA transposases in light of structure
-
Hickman A.B., Chandler M., Dyda F. Integrating prokaryotes and eukaryotes: DNA transposases in light of structure. Crit Rev Biochem Mol Biol 2010, 45:50-69.
-
(2010)
Crit Rev Biochem Mol Biol
, vol.45
, pp. 50-69
-
-
Hickman, A.B.1
Chandler, M.2
Dyda, F.3
-
6
-
-
77249117211
-
The AAA+ClpX machine unfolds a keystone subunit to remodel the Mu transpososome
-
Abdelhakim A.H., Sauer R.T., Baker T.A. The AAA+ClpX machine unfolds a keystone subunit to remodel the Mu transpososome. Proc Natl Acad Sci U S A 2010, 107:2437-2442.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 2437-2442
-
-
Abdelhakim, A.H.1
Sauer, R.T.2
Baker, T.A.3
-
9
-
-
17044421342
-
3D reconstruction of the Mu transposase and the Type 1 transpososome: a structural framework for Mu DNA transposition
-
Yuan J.F., Beniac D.R., Chaconas G., Ottensmeyer F.P. 3D reconstruction of the Mu transposase and the Type 1 transpososome: a structural framework for Mu DNA transposition. Genes Dev 2005, 19:840-852.
-
(2005)
Genes Dev
, vol.19
, pp. 840-852
-
-
Yuan, J.F.1
Beniac, D.R.2
Chaconas, G.3
Ottensmeyer, F.P.4
-
10
-
-
67651124919
-
Initial stages of V(D)J recombination: the organization of RAG1/2 and RSS DNA in the postcleavage complex
-
Grundy G.J., Ramon-Maiques S., Dimitriadis E.K., Kotova S., Biertumpfel C., Heymann J.B., Steven A.C., Gellert M., Yang W. Initial stages of V(D)J recombination: the organization of RAG1/2 and RSS DNA in the postcleavage complex. Mol Cell 2009, 35:217-227.
-
(2009)
Mol Cell
, vol.35
, pp. 217-227
-
-
Grundy, G.J.1
Ramon-Maiques, S.2
Dimitriadis, E.K.3
Kotova, S.4
Biertumpfel, C.5
Heymann, J.B.6
Steven, A.C.7
Gellert, M.8
Yang, W.9
-
11
-
-
77949365510
-
Retroviral intasome assembly and inhibition of DNA strand transfer
-
Hare S., Gupta S.S., Valkov E., Engelman A., Cherepanov P. Retroviral intasome assembly and inhibition of DNA strand transfer. Nature 2010, 464:232-236.
-
(2010)
Nature
, vol.464
, pp. 232-236
-
-
Hare, S.1
Gupta, S.S.2
Valkov, E.3
Engelman, A.4
Cherepanov, P.5
-
12
-
-
78149434355
-
The mechanism of retroviral integration from X-ray structures of its key intermediates
-
Maertens G.N., Hare S., Cherepanov P. The mechanism of retroviral integration from X-ray structures of its key intermediates. Nature 2010, 468:326-329.
-
(2010)
Nature
, vol.468
, pp. 326-329
-
-
Maertens, G.N.1
Hare, S.2
Cherepanov, P.3
-
13
-
-
70149109999
-
Molecular architecture of the Mos1 paired-end complex: the structural basis of DNA transposition in a eukaryote
-
Richardson J.M., Colloms S.D., Finnegan D.J., Walkinshaw M.D. Molecular architecture of the Mos1 paired-end complex: the structural basis of DNA transposition in a eukaryote. Cell 2009, 138:1096-1108.
-
(2009)
Cell
, vol.138
, pp. 1096-1108
-
-
Richardson, J.M.1
Colloms, S.D.2
Finnegan, D.J.3
Walkinshaw, M.D.4
-
14
-
-
78449306936
-
DNA recognition and the precleavage state during single-stranded DNA transposition in D. radiodurans
-
Hickman A.B., James J.A., Barabas O., Pasternak C., Ton-Hoang B., Chandler M., Sommer S., Dyda F. DNA recognition and the precleavage state during single-stranded DNA transposition in D. radiodurans. EMBO J 2010, 29:3840-3852.
-
(2010)
EMBO J
, vol.29
, pp. 3840-3852
-
-
Hickman, A.B.1
James, J.A.2
Barabas, O.3
Pasternak, C.4
Ton-Hoang, B.5
Chandler, M.6
Sommer, S.7
Dyda, F.8
-
15
-
-
0025777694
-
Reaction mechanism of alkaline phosphatase based on crystal structures. Two-metal ion catalysis
-
Kim E.E., Wyckoff H.W. Reaction mechanism of alkaline phosphatase based on crystal structures. Two-metal ion catalysis. J Mol Biol 1991, 218:449-464.
-
(1991)
J Mol Biol
, vol.218
, pp. 449-464
-
-
Kim, E.E.1
Wyckoff, H.W.2
-
16
-
-
0027184481
-
A general two-metal-ion mechanism for catalytic RNA
-
Steitz T.A., Steitz J.A. A general two-metal-ion mechanism for catalytic RNA. Proc Natl Acad Sci U S A 1993, 90:6498-6502.
-
(1993)
Proc Natl Acad Sci U S A
, vol.90
, pp. 6498-6502
-
-
Steitz, T.A.1
Steitz, J.A.2
-
17
-
-
0029871975
-
The interwoven architecture of the Mu transposase couples DNA synapsis to catalysis
-
Aldaz H., Schuster E., Baker T.A. The interwoven architecture of the Mu transposase couples DNA synapsis to catalysis. Cell 1996, 85:257-269.
-
(1996)
Cell
, vol.85
, pp. 257-269
-
-
Aldaz, H.1
Schuster, E.2
Baker, T.A.3
-
18
-
-
0029986753
-
Mu transpositional recombination: donor DNA cleavage and strand transfer in trans by the Mu transposase
-
Savilahti H., Mizuuchi K. Mu transpositional recombination: donor DNA cleavage and strand transfer in trans by the Mu transposase. Cell 1996, 85:271-280.
-
(1996)
Cell
, vol.85
, pp. 271-280
-
-
Savilahti, H.1
Mizuuchi, K.2
-
19
-
-
0034616993
-
Three-dimensional structure of the Tn5 synaptic complex transposition intermediate
-
Davies D.R., Goryshin I.Y., Reznikoff W.S., Rayment I. Three-dimensional structure of the Tn5 synaptic complex transposition intermediate. Science 2000, 289:77-85.
-
(2000)
Science
, vol.289
, pp. 77-85
-
-
Davies, D.R.1
Goryshin, I.Y.2
Reznikoff, W.S.3
Rayment, I.4
-
20
-
-
75649086128
-
Transposition of the human Hsmar1 transposon: rate-limiting steps and the importance of the flanking TA dinucleotide in second strand cleavage
-
Claeys Bouuaert C., Chalmers R. Transposition of the human Hsmar1 transposon: rate-limiting steps and the importance of the flanking TA dinucleotide in second strand cleavage. Nucleic Acids Res 2010, 38:190-202.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 190-202
-
-
Claeys Bouuaert, C.1
Chalmers, R.2
-
21
-
-
0037248592
-
Excision of the Drosophila mariner transposon Mos1. Comparison with bacterial transposition and V(D)J recombination
-
Dawson A., Finnegan D.J. Excision of the Drosophila mariner transposon Mos1. Comparison with bacterial transposition and V(D)J recombination. Mol Cell 2003, 11:225-235.
-
(2003)
Mol Cell
, vol.11
, pp. 225-235
-
-
Dawson, A.1
Finnegan, D.J.2
-
22
-
-
77951974621
-
Metnase/SETMAR: a domesticated primate transposase that enhances DNA repair, replication, and decatenation
-
Shaheen M., Williamson E., Nickoloff J., Lee S.H., Hromas R. Metnase/SETMAR: a domesticated primate transposase that enhances DNA repair, replication, and decatenation. Genetica 2010, 138:559-566.
-
(2010)
Genetica
, vol.138
, pp. 559-566
-
-
Shaheen, M.1
Williamson, E.2
Nickoloff, J.3
Lee, S.H.4
Hromas, R.5
-
23
-
-
77954704113
-
Crystal structure of the human Hsmar1-derived transposase domain in the DNA repair enzyme Metnase
-
Goodwin K.D., He H., Imasaki T., Lee S.H., Georgiadis M.M. Crystal structure of the human Hsmar1-derived transposase domain in the DNA repair enzyme Metnase. Biochemistry 2010, 49:5705-5713.
-
(2010)
Biochemistry
, vol.49
, pp. 5705-5713
-
-
Goodwin, K.D.1
He, H.2
Imasaki, T.3
Lee, S.H.4
Georgiadis, M.M.5
-
24
-
-
0028264042
-
Human immunodeficiency virus integrase directs integration to sites of severe DNA distortion within the nucleosome core
-
Pruss D., Bushman F.D., Wolffe A.P. Human immunodeficiency virus integrase directs integration to sites of severe DNA distortion within the nucleosome core. Proc Natl Acad Sci U S A 1994, 91:5913-5917.
-
(1994)
Proc Natl Acad Sci U S A
, vol.91
, pp. 5913-5917
-
-
Pruss, D.1
Bushman, F.D.2
Wolffe, A.P.3
-
25
-
-
70349572500
-
Early steps of V(D)J rearrangement: insights from biochemical studies of RAG-RSS complexes
-
Swanson P.C., Kumar S., Raval P. Early steps of V(D)J rearrangement: insights from biochemical studies of RAG-RSS complexes. Adv Exp Med Biol 2009, 650:1-15.
-
(2009)
Adv Exp Med Biol
, vol.650
, pp. 1-15
-
-
Swanson, P.C.1
Kumar, S.2
Raval, P.3
-
26
-
-
7444236477
-
Antigen receptor genes and the evolution of a recombinase
-
Schatz D.G. Antigen receptor genes and the evolution of a recombinase. Semin Immunol 2004, 16:245-256.
-
(2004)
Semin Immunol
, vol.16
, pp. 245-256
-
-
Schatz, D.G.1
-
27
-
-
37249041657
-
RAG2 PHD finger couples histone H3 lysine 4 trimethylation with V(D)J recombination
-
Matthews A.G., Kuo A.J., Ramon-Maiques S., Han S., Champagne K.S., Ivanov D., Gallardo M., Carney D., Cheung P., Ciccone D.N., et al. RAG2 PHD finger couples histone H3 lysine 4 trimethylation with V(D)J recombination. Nature 2007, 450:1106-1110.
-
(2007)
Nature
, vol.450
, pp. 1106-1110
-
-
Matthews, A.G.1
Kuo, A.J.2
Ramon-Maiques, S.3
Han, S.4
Champagne, K.S.5
Ivanov, D.6
Gallardo, M.7
Carney, D.8
Cheung, P.9
Ciccone, D.N.10
-
28
-
-
0030959658
-
Crystal structure of the RAG1 dimerization domain reveals multiple zinc-binding motifs including a novel zinc binuclear cluster
-
Bellon S.F., Rodgers K.K., Schatz D.G., Coleman J.E., Steitz T.A. Crystal structure of the RAG1 dimerization domain reveals multiple zinc-binding motifs including a novel zinc binuclear cluster. Nat Struct Biol 1997, 4:586-591.
-
(1997)
Nat Struct Biol
, vol.4
, pp. 586-591
-
-
Bellon, S.F.1
Rodgers, K.K.2
Schatz, D.G.3
Coleman, J.E.4
Steitz, T.A.5
-
29
-
-
66149096706
-
Structure of the RAG1 nonamer binding domain with DNA reveals a dimer that mediates DNA synapsis
-
Yin F.F., Bailey S., Innis C.A., Ciubotaru M., Kamtekar S., Steitz T.A., Schatz D.G. Structure of the RAG1 nonamer binding domain with DNA reveals a dimer that mediates DNA synapsis. Nat Struct Mol Biol 2009, 16:499-508.
-
(2009)
Nat Struct Mol Biol
, vol.16
, pp. 499-508
-
-
Yin, F.F.1
Bailey, S.2
Innis, C.A.3
Ciubotaru, M.4
Kamtekar, S.5
Steitz, T.A.6
Schatz, D.G.7
-
30
-
-
0030779907
-
Crystal structure of the specific DNA-binding domain of Tc3 transposase of C. elegans in complex with transposon DNA
-
van Pouderoyen G., Ketting R.F., Perrakis A., Plasterk R.H., Sixma T.K. Crystal structure of the specific DNA-binding domain of Tc3 transposase of C. elegans in complex with transposon DNA. EMBO J 1997, 16:6044-6054.
-
(1997)
EMBO J
, vol.16
, pp. 6044-6054
-
-
van Pouderoyen, G.1
Ketting, R.F.2
Perrakis, A.3
Plasterk, R.H.4
Sixma, T.K.5
-
31
-
-
42949098137
-
Architecture of a serine recombinase-DNA regulatory complex
-
Mouw K.W., Rowland S.J., Gajjar M.M., Boocock M.R., Stark W.M., Rice P.A. Architecture of a serine recombinase-DNA regulatory complex. Mol Cell 2008, 30:145-155.
-
(2008)
Mol Cell
, vol.30
, pp. 145-155
-
-
Mouw, K.W.1
Rowland, S.J.2
Gajjar, M.M.3
Boocock, M.R.4
Stark, W.M.5
Rice, P.A.6
-
32
-
-
26944453651
-
Molecular architecture of a eukaryotic DNA transposase
-
Hickman A.B., Perez Z.N., Zhou L., Musingarimi P., Ghirlando R., Hinshaw J.E., Craig N.L., Dyda F. Molecular architecture of a eukaryotic DNA transposase. Nat Struct Mol Biol 2005, 12:715-721.
-
(2005)
Nat Struct Mol Biol
, vol.12
, pp. 715-721
-
-
Hickman, A.B.1
Perez, Z.N.2
Zhou, L.3
Musingarimi, P.4
Ghirlando, R.5
Hinshaw, J.E.6
Craig, N.L.7
Dyda, F.8
-
33
-
-
38649116679
-
Mechanism of IS200/IS605 family DNA transposases: activation and transposon-directed target site selection
-
Barabas O., Ronning D.R., Guynet C., Hickman A.B., Ton-Hoang B., Chandler M., Dyda F. Mechanism of IS200/IS605 family DNA transposases: activation and transposon-directed target site selection. Cell 2008, 132:208-220.
-
(2008)
Cell
, vol.132
, pp. 208-220
-
-
Barabas, O.1
Ronning, D.R.2
Guynet, C.3
Hickman, A.B.4
Ton-Hoang, B.5
Chandler, M.6
Dyda, F.7
-
34
-
-
77955332264
-
Single-stranded DNA transposition is coupled to host replication
-
Ton-Hoang B., Pasternak C., Siguier P., Guynet C., Hickman A.B., Dyda F., Sommer S., Chandler M. Single-stranded DNA transposition is coupled to host replication. Cell 2010, 142:398-408.
-
(2010)
Cell
, vol.142
, pp. 398-408
-
-
Ton-Hoang, B.1
Pasternak, C.2
Siguier, P.3
Guynet, C.4
Hickman, A.B.5
Dyda, F.6
Sommer, S.7
Chandler, M.8
-
35
-
-
66449109201
-
Resetting the site: redirecting integration of an insertion sequence in a predictable way
-
Guynet C., Achard A., Hoang B.T., Barabas O., Hickman A.B., Dyda F., Chandler M. Resetting the site: redirecting integration of an insertion sequence in a predictable way. Mol Cell 2009, 34:612-619.
-
(2009)
Mol Cell
, vol.34
, pp. 612-619
-
-
Guynet, C.1
Achard, A.2
Hoang, B.T.3
Barabas, O.4
Hickman, A.B.5
Dyda, F.6
Chandler, M.7
-
36
-
-
23844491860
-
Processing of viral DNA ends channels the HIV-1 integration reaction to concerted integration
-
Li M., Craigie R. Processing of viral DNA ends channels the HIV-1 integration reaction to concerted integration. J Biol Chem 2005, 280:29334-29339.
-
(2005)
J Biol Chem
, vol.280
, pp. 29334-29339
-
-
Li, M.1
Craigie, R.2
-
37
-
-
27144556149
-
The transpososome: control of transposition at the level of catalysis
-
Gueguen E., Rousseau P., Duval-Valentin G., Chandler M. The transpososome: control of transposition at the level of catalysis. Trends Microbiol 2005, 13:543-549.
-
(2005)
Trends Microbiol
, vol.13
, pp. 543-549
-
-
Gueguen, E.1
Rousseau, P.2
Duval-Valentin, G.3
Chandler, M.4
-
38
-
-
77955087046
-
Architecture of the Tn7 posttransposition complex: an elaborate nucleoprotein structure
-
Holder J.W., Craig N.L. Architecture of the Tn7 posttransposition complex: an elaborate nucleoprotein structure. J Mol Biol 2010, 401:167-181.
-
(2010)
J Mol Biol
, vol.401
, pp. 167-181
-
-
Holder, J.W.1
Craig, N.L.2
-
39
-
-
77950362174
-
Precise targeted integration by a chimaeric transposase zinc-finger fusion protein
-
Feng X., Bednarz A.L., Colloms S.D. Precise targeted integration by a chimaeric transposase zinc-finger fusion protein. Nucleic Acids Res 2010, 38:1204-1216.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 1204-1216
-
-
Feng, X.1
Bednarz, A.L.2
Colloms, S.D.3
|