Characterizing the effects of the protein environment on the reduction potentials of metalloproteins

Journal of Biological Inorganic Chemistry

Volumn 18, Issue 1, 2013, Pages 103-110

  Perrin Jr , Bradley Scott ^a   Ichiye, Toshiko ^a  

^a GEORGETOWN UNIVERSITY   (United States)

Author keywords

Ferredoxin; HiPIP; Iron sulfur proteins; Nitrogenase; Poisson Boltzmann continuum electrostatics; Reduction potential

Indexed keywords

CYTOCHROME C; FERREDOXIN; IRON; METALLOPROTEIN; NITROGENASE; PLASTOCYANIN; RUBREDOXIN;

AMINO ACID SEQUENCE; ARTICLE; ATOM; CONFORMATIONAL TRANSITION; CRYSTAL STRUCTURE; DIELECTRIC CONSTANT; ELECTRIC POTENTIAL; MOLECULAR WEIGHT; POLARIZATION; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN FOLDING; REDUCTION KINETICS; SOLVATION; STATIC ELECTRICITY;

CRYSTALLOGRAPHY, X-RAY; ELECTRON TRANSPORT; METALLOPROTEINS; MODELS, MOLECULAR; PROTEIN CONFORMATION; STATIC ELECTRICITY; STRUCTURE-ACTIVITY RELATIONSHIP; THERMODYNAMICS;

EID: 84872358570     PISSN: 09498257     EISSN: 14321327     Source Type: Journal    
DOI: 10.1007/s00775-012-0955-3     Document Type: Article

References (31)

1. Langen R, Jensen G, Jacob U, Stephens P, Warshel A (1992) J Biol Chem 267:25625
2. Gunner MR, Honig B (1991) Proc Natl Acad Sci USA 88:9151
3. Swartz P, Beck B, Ichiye T (1996) Biophys J 71:2958
4. Ergenekan CE, Thomas D, Fischer JT, Tan ML, Eidsness MK, Kang CH, Ichiye T (2003) Biophys J 85:2818
5. Beck BW, Xie Q, Ichiye T (2001) Biophys J 81:601
6. Luo Y, Ergenekan C, Fischer J, Tan M, Ichiye T (2010) Biophys J 98:560
7. Mouesca JM, Chen JL, Noodleman L, Bashford D, Case DA (1994) J Am Chem Soc 116:11898
8. Torres RA, Lovell T, Noodleman L, Case DA (2003) J Am Chem Soc 125:1923
9. Niu S, Ichiye T (2011) Mol Simul 37:572
10. Niu S, Wang XB, Nichols JA, Wang L-S, Ichiye T (2003) J Phys Chem A 107:2898
11. Wang X-B, Niu S, Yang X, Ibrahim SK, Pickett CJ, Ichiye T, Wang L-S (2003) J Am Chem Soc 125:14072
12. Perrin BS Jr, Ichiye T (2010) Proteins Struct Funct Bioinf 78:2798
13. Niu S, Ichiye T (2009) J Am Chem Soc 131:5724
14. Dolan EA, Yelle RB, Beck BW, Fischer JT, Ichiye T (2004) Biophys J 86:2030
15. Böttcher CJF (1973) Theory of electric polarization: dielectrics in static fields, vol. 1. Elsevier, Amsterdam
16. Connolly ML (1983) Science 221:709
17. Sheridan R, Allen L, Carter C (1981) J Biol Chem 256:5052-5057
18. Reiss H, Heller A (1985) J Phys Chem 89:4207
19. Lewis A, Bumpus JA, Truhlar DG, Cramer CJ (2007) J Chem Educ 84:934
20. Lewis A, Bumpus JA, Truhlar DG, Cramer CJ (2004) J Chem Educ 81:586
21. Han W-G, Noodleman L (2011) Inorg Chem 50:2302
22. Tissandier MD, Cowen KA, Feng WY, Gundlach E, Cohen MH, Earhart AD, Coe JV, Tuttle TR (1998) J Phys Chem A 102:7787
23. Trasatti S (1986) Pure Appl Chem 58:955
24. Perrin B Jr, Niu S, Ichiye T (2012) J Comput Chem (accepted)
25. Warshel A, Papazyan A, Muegge I (1997) J Biol Inorg Chem 2:143
26. Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA (2001) Proc Natl Acad Sci USA 98:10037
27. MacKerell Jr AD, Bashford D, Bellott M, Dunbrack Jr RL, Evanseck JD, Field MJ, Fischer S, Gao J, Guo H, Ha S, Joseph-McCarthy D, Kuchnir L, Kuczera K, Lau FTK, Mattos C, Michnick S, Ngo T, Nguyen DT, Prodhom B, Reiher WE, Roux B, Schlenkrich M, Smith JC, Stote R, Straub J, Watanabe M, Wiorkiewicz-Kuczera J, Yin D, Karplus M (1998) J Phys Chem B 102:3586
28. Luo Y, Niu S, Ichiye T (2012) J Phys Chem A 116:8918
29. Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, Weissig H, Shindyalov IN, Bourne PE (2000) Nucleic Acids Res 28:235
30. Brooks BR, Bruccoleri RE, Olafson BD, States DJ, Swaminathan S, Karplus M (1983) J Comput Chem 4:187
31. Tezcan FA, Kaiser JT, Mustafi D, Walton MY, Howard JB, Rees DC (2005) Science 309:1377