The Influence of In Situ Chemical Oxidation on Microbial Community Composition in Groundwater Contaminated with Chlorinated Solvents

Microbial Ecology

Volumn 65, Issue 1, 2013, Pages 39-49

  Sercu, Bram ^a,d   Jones, Antony D G ^b   Wu, Cindy H ^c,e   Escobar, Mauricio H ^b,f   Serlin, Carol L ^b   Knapp, Timothy A ^b   Andersen, Gary L ^c   Holden, Patricia A ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b ENVIRON INTERNATIONAL CORPORATION   (United States)

^c LAWRENCE BERKELEY NATIONAL LABORATORY   (United States)

^d Watershed Protection District County of Ventura   (United States)

^e CALIFORNIA DEPARTMENT OF PUBLIC HEALTH   (United States)

^f Roux Associates Inc   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA (MICROORGANISMS); DESULFUROMONAS; SULFUROSPIRILLUM;

EID: 84872294553     PISSN: 00953628     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00248-012-0092-0     Document Type: Article

References (54)

1. Bakken LR, Olsen RA (1989) DNA-content of soil bacteria of different cell size. Soil Biol Biochem 6: 789-793.
2. Baldwin BR, Peacock AD, Park M, Ogles DM, Istok JD, McKinley JP, Resch CT, White DC (2008) Multilevel samplers as microcosms to assess microbial response to biostimulation. Ground Water 46: 295-304.
3. Bradley PM (2000) Microbial degradation of chloroethenes in groundwater systems. Hydrogeol J 8: 104-111.
4. Brodie EL, DeSantis TZ, Joyner DC, Baek SM, Larsen JT, Andersen GL, Hazen TC, Richardson PM, Herman DJ, Tokunaga TK, Wan JMM, Firestone MK (2006) Application of a high-density oligonucleotide microarray approach to study bacterial population dynamics during uranium reduction and reoxidation. Appl Environ Microbiol 72: 6288-6298.
5. Brodie EL, DeSantis TZ, Parker JPM, Zubietta IX, Piceno YM, Andersen GL (2007) Urban aerosols harbor diverse and dynamic bacterial populations. Proc Natl Acad Sci USA 104: 299-304.
6. Chang YP, Long PE, Geyer R, Peacock AD, Resch CT, Sublette K, Pfiffner S, Smithgall A, Anderson RT, Vrionis HA, Stephen JR, Dayvault R, Ortiz-Bernad I, Lovley DR, White DC (2005) Microbial incorporation of C-13-labeled acetate at the field scale: detection of microbes responsible for reduction of U(VI). Environ Sci Technol 39: 9039-9048.
7. Chen YM, Lin TF, Huang C, Lin JC (2008) Cometabolic degradation kinetics of TCE and phenol by Pseudomonas putida. Chemosphere 72: 1671-1680.
8. Christ JA, Ramsburg CA, Abriola LM, Pennell KD, Loeffler FW (2005) Coupling aggressive mass removal with microbial reductive dechlorination for remediation of DNAPL source zones: a review and assessment. Environ Health Perspect 113: 465-477.
9. Cichocka D, Siegert M, Imfeld G, Andert J, Beck K, Diekert G, Richnow HH, Nijenhuis I (2007) Factors controlling the carbon isotope fractionation of tetra- and trichloroethene during reductive dechlorination by Sulfurospirillum spp. and Desulfitobacterium sp. strain PCE-S. FEMS Microbiol Ecol 62: 98-107.
10. Clarke KR, Warwick RM (2001) Change in marine communities: an approach to statistical analysis and interpretation, 2nd edn. Primer-E, Plymouth, UK.
11. Conrad ME, Brodie EL, Radtke CW, Corey W, Bill M, Delwiche ME, Lee MH, Swift DL, Colwell FS (2010) Field evidence for co-metabolism of trichloroethene stimulated by addition of electron donor to groundwater. Environ Sci Technol 44: 4697-4704.
12. Cordova-Kreylos AL, Cao YP, Green PG, Hwang HM, Kuivila KM, LaMontagne MG, van De Werfhorst LC, Holden PA, Scow KM (2006) Diversity, composition, and geographical distribution of microbial communities in California salt marsh sediments. Appl Environ Microbiol 72: 3357-3366.
13. Crimi ML, Siegrist RL (2003) Geochemical effects on metals following permanganate oxidation of DNAPLs. Ground Water 41: 458-469.
14. DeSantis TZ, Hugenholtz P, Larsen N, Rojas M, Brodie EL, Keller K, Huber T, Dalevi D, Hu P, Andersen GL (2006) Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Appl Environ Microbiol 72: 5069-5072.
15. DeSantis TZ, Brodie EL, Moberg JP, Zubieta IX, Piceno YM, Andersen GL (2007) High-density universal 16S rRNA microarray analysis reveals broader diversity than typical clone library when sampling the environment. Microb Ecol 53: 371-383.
16. Drzyzga O, El Mamouni R, Agathos SN, Gottschal JC (2002) Dehalogenation of chlorinated ethenes and immobilization of nickel in anaerobic sediment columns under sulfidogenic conditions. Environ Sci Technol 36: 2630-2635.
17. Flynn TM, Sanford RA, Bethke CM (2008) Attached and suspended microbial communities in a pristine confined aquifer. Water Resour Res 44: 1-7.
18. Griebler C, Lueders T (2009) Microbial biodiversity in groundwater ecosystems. Freshw Biol 54: 649-677.
19. Griebler C, Mindl B, Slezak D, Geiger-Kaiser M (2002) Distribution patterns of attached and suspended bacteria in pristine and contaminated shallow aquifers studied with an in situ sediment exposure microcosm. Aquat Microb Ecol 28: 117-129.
20. Griffiths RI, Whiteley AS, O'Donnell AG, Bailey MJ (2000) Rapid method for coextraction of DNA and RNA from natural environments for analysis of ribosomal DNA- and rRNA-based microbial community composition. Appl Environ Microbiol 66: 5488-5491.
21. Hendrickson ER, Payne JA, Young RM, Starr MG, Perry MP, Fahnestock S, Ellis DE, Ebersole RC (2002) Molecular analysis of Dehalococcoides 16S ribosomal DNA from chloroethene-contaminated sites throughout North America and Europe. Appl Environ Microbiol 68: 485-495.
22. Hohnstock-Ashe AM, Plummer SM, Yager RM, Baveye P, Madsen EL (2001) Further biogeochemical characterization of a trichloroethene-contaminated fractured dolomite aquifer: electron source and microbial communities involved in reductive dechlorination. Environ Sci Technol 35: 4449-4456.
23. Holm PE, Nielsen PH, Albrechtsen HJ, Christensen TH (1992) Importance of unattached bacteria and bacteria attached to sediment in determining potentials for degradation of xenobiotic organic contaminants in an aerobic aquifer. Appl Environ Microbiol 58: 3020-3026.
24. Honning J, Broholm MM, Bjerg PL (2007) Role of diffusion in chemical oxidation of PCE in a dual permeability system. Environ Sci Technol 41: 8426-8432.
25. Hrapovic L, Sleep BE, Major DJ, Hood ED (2005) Laboratory study of treatment of trichloroethene by chemical oxidation followed by bioremediation. Environ Sci Technol 39: 2888-2897.
26. Huling SG, Pivetz BE (2006) In-situ chemical oxidation. United States Environmental Protection Agency, Office of Research and Development, National Risk Management Research Laboratory, Cincinnati, OH.
27. Ivanov II, Atarashi K, Manel N, Brodie EL, Shima T, Karaoz U, Wei DG, Goldfarb KC, Santee CA, Lynch SV, Tanoue T, Imaoka A, Itoh K, Takeda K, Umesaki Y, Honda K, Littman DR (2009) Induction of intestinal Th17 cells by segmented filamentous bacteria. Cell 139: 485-498.
28. Kent AD, Smith DJ, Benson BJ, Triplett EW (2003) Web-based phylogenetic assignment tool for analysis of terminal restriction fragment length polymorphism profiles of microbial communities. Appl Environ Microbiol 69: 6768-6776.
29. Kikuchi T, Iwasaki K, Nishihara H, Takamura Y, Yagi O (2002) Quantitative and rapid detection of the trichloroethylene-degrading bacterium Methylocystis sp. M in groundwater by real-time PCR. Appl Microbiol Biotechnol 59: 731-736.
30. La Duc MT, Osman S, Vaishampayan P, Piceno Y, Andersen G, Spry JA, Venkateswaran K (2009) Comprehensive census of bacteria in clean rooms by using DNA microarray and cloning methods. Appl Environ Microbiol 75: 6559-6567.
31. LaMontagne MG, Holden PA (2003) Comparison of free-living and particle-associated bacterial communities in a coastal lagoon. Microbiol Ecol 46: 228-237.
32. LaMontagne MG, Leifer I, Bergmann S, van De Werfhorst LC, Holden PA (2004) Bacterial diversity in marine hydrocarbon seep sediments. Environ Microbiol 6: 799-808.
33. Lehman RM, O'Connell SP, Banta A, Fredrickson JK, Rysenbach AL, Kieft TL, Colwell FS (2004) Microbiological comparison of core and groundwater samples collected from a fractured basalt aquifer with that of dialysis chambers incubated in situ. Geomicrobiol J 21: 169-182.
34. Liang YT, van Nostrand JD, Wang J, Zhang X, Zhou JZ, Li GH (2009) Microarray-based functional gene analysis of soil microbial communities during ozonation and biodegradation of crude oil. Chemosphere 75: 193-199.
35. Macbeth TW, Cummings DE, Spring S, Petzke LM, Sorenson KS (2004) Molecular characterization of a dechlorinating community resulting from in situ biostimulation in a trichloroethene-contaminated deep, fractured basalt aquifer and comparison to a derivative laboratory culture. Appl Environ Microbiol 70: 7329-7341.
36. McGuire TM, McDade JM, Newell CJ (2006) Performance of DNAPL source depletion technologies at 59 chlorinated solvent-impacted sites. Ground Water Monit Remediat 26: 73-84.
37. Miller TR, Franklin MP, Halden RU (2007) Bacterial community analysis of shallow groundwater undergoing sequential anaerobic and aerobic chloroethene biotransformation. FEMS Microbiol Ecol 60: 299-311.
38. Moran MJ, Zogorski JS, Squillace PJ (2006) Chlorinated solvents in groundwater of the United States. Environ Sci Technol 41: 74-81.
39. Mundle K, Reynolds DA, West MR, Kueper BH (2007) Concentration rebound following in situ chemical oxidation in fractured clay. Ground Water 45: 692-702.
40. Nijenhuis I, Nikolausz M, Koth A, Felfolfi T, Weiss H, Drangmeister J, Grossmann J, Kastner M, Richnow HH (2007) Assessment of the natural attenuation of chlorinated ethenes in an anaerobic contaminated aquifer in the Bitterfeld/Wolfen area using stable isotope techniques, microcosm studies and molecular biomarkers. Chemosphere 67: 300-311.
41. Osborn AM, Moore ERB, Timmis KN (2000) An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics. Environ Microbiol 2: 39-50.
42. Peacock AD, Chang YJ, Istok JD, Krumholz L, Geyer R, Kinsall B, Watson D, Sublette KL, White DC (2004) Utilization of microbial biofilms as monitors of bioremediation. Microb Ecol 47: 284-292.
43. Reardon CL, Cummings DE, Petzke LM, Kinsall BL, Watson DB, Peyton BM, Geesey GG (2004) Composition and diversity of microbial communities recovered from surrogate minerals incubated in an acidic uranium-contaminated aquifer. Appl Environ Microbiol 70: 6037-6046.
44. Richardson RE, James CA, Bhupathiraju VK, Alvarez-Cohen L (2002) Microbial activity in soils following steam treatment. Biodegradation 13: 285-295.
45. Rowe AR, Lazar BJ, Morris RM, Richardson RE (2008) Characterization of the community structure of a dechlorinating mixed culture and comparisons of gene expression in planktonic and biofloc-associated "Dehalococcoides" and Methanospirillum species. Appl Environ Microbiol 74: 6709-6719.
46. Sahl JW, Munakata-Marr J, Crimi ML, Siegrist RL (2007) Coupling permanganate oxidation with microbial dechlorination. Water Environ Res 79: 5-12.
47. Sercu B, van De Werfhorst LC, Murray JLS, Holden PA (2011) Cultivation-independent analysis of bacteria in IDEXX Quanti-Tray/2000 fecal indicator assays. Appl Environ Microbiol 77: 627-633.
48. Sung Y, Ritalahti KM, Sanford RA, Urbance JW, Flynn SJ, Tiedje JM, Loeffler FE (2003) Characterization of two tetrachloroethene-reducing, acetate-oxidizing anaerobic bacteria and their description as Desulfuromonas michiganensis sp. nov. Appl Environ Microbiol 69: 2964-2974.
49. Suttinun O, Muller R, Luepromchai E (2009) Trichloroethylene cometabolic degradation by Rhodococcus sp. L4 induced with plant essential oils. Biodegradation 20: 281-291.
50. Thomson NR, Hood ED, Farquhar GJ (2007) Permanganate treatment of an emplaced DNAPL source. Ground Water Monit Remediat 27: 74-85.
51. Watts JR, Teel AL (2006) Treatment of contaminated soils and groundwater using ISCO. Pract Period Hazard Toxic Radioact Waste Manag 10: 2-9.
52. Yagi JM, Neuhauser EF, Ripp JA, Mauro DM, Madsen EL (2010) Subsurface ecosystem resilience: long-term attenuation of subsurface contaminants supports a dynamic microbial community. ISME J 4: 131-143.
53. Yergeau E, Schoondermark-Stolk SA, Brodie EL, Dejean S, DeSantis TZ, Goncalves O, Piceno YM, Andersen GL, Kowalchuk GA (2009) Environmental microarray analyses of Antarctic soil microbial communities. ISME J 3: 340-351.
54. Yeskis D, Zavala B (2002) Ground-water sampling guidelines for superfund and RCRA project managers. US EPA, Publication Number EPA 542-S-02-001.