The hemicellulolytic enzyme arsenal of Thermobacillus xylanilyticus depends on the composition of biomass used for growth

Microbial Cell Factories

Volumn 11, Issue , 2012, Pages

  Rakotoarivonina, Harivony ^a,b   Hermant, Béatrice ^a,b   Monthe, Nina ^a,b   Rémond, Caroline ^a,b  

^a UNIVERSITÉ DE REIMS CHAMPAGNE ARDENNE   (France)

^b UMR FARE614 INRA   (France)

Author keywords

Growth; Hemicellulases production; Thermobacillus xylanilyticus; Wheat bran; Wheat straw

Indexed keywords

ACETYL ESTER; ARABINOFURANOSIDASE; GLUCOSE; GLYCOGEN DEBRANCHING ENZYME; HEMICELLULOSE; LIGNOCELLULOSE; PHENOL DERIVATIVE; UNCLASSIFIED DRUG; XYLAN;

AGRICULTURAL MANAGEMENT; ARTICLE; BACTERIAL GROWTH; BACTERIUM CULTURE; BIOMASS PRODUCTION; BRAN; CARBON SOURCE; CELL WALL; CHEMICAL COMPOSITION; CONTROLLED STUDY; ENZYME ACTIVITY; ENZYME SYNTHESIS; NONHUMAN; PLANT CELL; STRAW; THERMOBACILLUS XYLANILYTICUS; THERMOPHILIC BACTERIUM; WHEAT;

BACILLALES; BACTERIAL PROTEINS; BIOMASS; CELL WALL; DIETARY FIBER; ENDO-1,4-BETA XYLANASES; ESTERASES; GLYCOSIDE HYDROLASES; HYDROLASES; KINETICS; POLYSACCHARIDES; TRITICUM; XYLANS;

BACTERIA (MICROORGANISMS); THERMOBACILLUS XYLANILYTICUS; TRITICUM AESTIVUM;

EID: 84872264251     PISSN: None     EISSN: 14752859     Source Type: Journal    
DOI: 10.1186/1475-2859-11-159     Document Type: Article

References (46)

1. Kumar R, Singh S, Singh OV. Bioconversion of lignocellulosic biomass: biochemical and molecular perspectives. J Ind Microbiol Biotechnol 2008, 35:377-391. 10.1007/s10295-008-0327-8, 18338189.
2. Sanchez OJ, Cardona CA. Trends in biotechnological production of fuel ethanol from different feedstocks. Bioresour Technol 2008, 99:5270-5295. 10.1016/j.biortech.2007.11.013, 18158236.
3. Charles D. BIOFUELS corn-based ethanol flunks Key test. Science 2009, 324:587-587. 10.1126/science.324_587, 19407177.
4. Muzard M, Aubry N, Plantier-Royon R, O'Donohue M, Remond C. Evaluation of the transglycosylation activities of a GH 39 beta-D-xylosidase for the synthesis of xylose-based glycosides. J Mol Catalysis B-Enzymatic 2009, 58:1-5.
5. Ochs M, Muzard M, Plantier-Royon R, Estrine B, Remond C. Enzymatic synthesis of alkyl beta-D-xylosides and oligoxylosides from xylans and from hydrothermally pretreated wheat bran. Green Chemistry 2011, 13:2380-2388.
6. Cheng JJ, Timilsina GR. Status and barriers of advanced biofuel technologies: A review. Renewable Energy 2011, 36:3541-3549.
7. Saulnier L, Thibault JF. Ferulic acid and diferulic acids as components of sugar-beet pectins and maize bran heteroxylans. J Sci Food Agric 1999, 79:396-402.
8. Ebringerova A, Hromadkova Z, Heinze T. Hemicellulose. Polysaccharides 1: structure, characterization and use 2005, 1-67. Berlin: Springer-Verlag Berlin, Heinze T, Volume 186th, Advances in Polymer Science.
9. Kumar P, Barrett DM, Delwiche MJ, Stroeve P. Methods for pretreatment of lignocellulosic biomass for efficient hydrolysis and biofuel production. Ind Eng Chem Res 2009, 48:3713-3729.
10. Parton W, Silver WL. Global-scale similarities in nitrogen release patterns during long-term decomposition (vol 315, pg 361, 2007). Science 2007, 315:940-940.
11. Brulc JM, Antonopoulos DA, Miller MEB, Wilson MK, Yannarell AC, Dinsdale EA, Edwards RE, Frank ED, Emerson JB, Wacklin P, et al. Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases. Proc Natl Acad Sci U S A 2009, 106:1948-1953. 10.1073/pnas.0806191105, 2633212, 19181843.
12. Warnecke F, Luginbuehl P, Ivanova N, Ghassemian M, Richardson TH, Stege JT, Cayouette M, McHardy AC, Djordjevic G, Aboushadi N, et al. Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite. Nature 2007, 450:560-U517. 10.1038/nature06269, 18033299.
13. Lynd LR, Weimer PJ, van Zyl WH, Pretorius IS. Microbial cellulose utilization: fundamentals and biotechnology. Microbiol Mol Biol Rev 2002, 66:506-577. 10.1128/MMBR.66.3.506-577.2002, 120791, 12209002.
14. Saha BC. Hemicellulose bioconversion. J Ind Microbiol Biotechnol 2003, 30:279-291. 10.1007/s10295-003-0049-x, 12698321.
15. Ohgren K, Bura R, Saddler J, Zacchi G. Effect of hemicellulose and lignin removal on enzymatic hydrolysis of steam pretreated corn stover. Bioresour Technol 2007, 98:2503-2510. 10.1016/j.biortech.2006.09.003, 17113771.
16. Samain E, Touzel J-P, Brodel B, Debeire P. Isolation of a thermophilic bacterium producing high levels of xylanases. Xylans and xylanases 1992, 467-470. Elsevier Science.
17. Touzel J-P, O'Donohue M, Debeire P, Samain E, Breton C. Thermobacillus xylanilyticus gen. nov., sp. nov., a new aerobic thermophilic xylan-degrading bacterium isolated from farm soil. Int J Evol Syst Biol 2000, 50:315-320.
18. Connerton I, Cummings N, Harris GW, Debeire P, Breton C. A single domain thermophilic xylanase can bind insoluble xylan: evidence for surface aromatic clusters. Biochim Biophys Acta 1999, 1433:110-121. 10.1016/S0167-4838(99)00151-X, 10446364.
19. Samain E, Debeire P, Ouzel JP. High level production of a cellulase-free xylanase in glucose-limited fed batch cultures of a thermophilic Bacillus strain. J Biotechnol 1997, 58:71-78. 10.1016/S0168-1656(97)00140-5, 9383981.
20. Debeire-Gosselin M, Loonis M, Samain E, Debeire P, Visser J, Eldman G, Usters-van Someren MA, Voragen AG. Purification and properties of 22 kDa endoxylanase excreted by a new strain of thermophilic Bacillus 1992, 463-466. Amsterdam: Elsevier, Xylans and xylanases.
21. Debeche T, Cummings N, Connerton I, Debeire P, O'Donohue MJ. Genetic and biochemical characterization of a highly thermostable a-L-arabinofuranosidase from Thermobacillus xylanilyticus. Appl Environ Microbiol 2000, 66:1734-1736. 10.1128/AEM.66.4.1734-1736.2000, 92053, 10742272.
22. Rakotoarivonina H, Hermant B, Chabbert B, Touzel J-P, Remond C. A thermostable feruloyl-esterase from the hemicellulolytic bacterium Thermobacillus xylanilyticus releases phenolic acids from non-pretreated plant cell walls. Appl Microbiol Biotechnol 2011, 90:541-552. 10.1007/s00253-011-3103-z, 21279344.
23. Beaugrand J, Chambat G, Wong V, Goubet F, Remond-Zilliox C, Paes G, Benamrouche S, Debeire P, O'Donohue M, Chabbert B. Impact and efficiency of GH10 and GH11 thermostable endoxylanases on wheat bran and alkali-extractable arabinoxylans. Carbohydr Res 2004, 339:2529-2540. 10.1016/j.carres.2004.08.012, 15476714.
24. Benamrouche S, Crônier D, Debeire P, Chabbert B. A chemichal and histological study of the effect of 1-4-β-endoxylanase treatment on wheat bran. J Cereal Sci 2002, 36:253-260.
25. Remond C, Aubry N, Cronier D, Noel S, Martel F, Roge B, Rakotoarivonina H, Debeire P, Chabbert B. Combination of ammonia and xylanase pretreatments: Impact on enzymatic xylan and cellulose recovery from wheat straw. Bioresour Technol 2010, 101:6712-6717. 10.1016/j.biortech.2010.03.115, 20399643.
26. Remond C, Boukari I, Chambat G, O'Donohue M. Action of a GH 51 alpha-L-arabinofuranosidase on wheat-derived arabinoxylans and arabino-xylooligosaccharides. Carbohydr Polym 2008, 72:424-430.
27. St John FJ, Rice JD, Preston JF. Paenibacillus sp strain JDR-2 and XynA(1): a novel system for methylglucuronoxylan utilization. Appl Environ Microbiol 2006, 72:1496-1506. 10.1128/AEM.72.2.1496-1506.2006, 1392964, 16461704.
28. Tolonen AC, Haas W, Chilaka AC, Aach J, Gygi SP, Church GM. Proteome-wide systems analysis of a cellulosic biofuel-producing microbe. Mol Syst Biol 2011, 7:461. 3049413, 21245846.
29. VanFossen AL, Ozdemir I, Zelin SL, Kelly RM. Glycoside hydrolase inventory drives plant polysaccharide deconstruction by the extremely thermophilic bacterium caldicellulosiruptor saccharolyticus. Biotechnol Bioeng 2011, 108:1559-1569. 10.1002/bit.23093, 21337327.
30. Yang S-J, Kataeva I, Hamilton-Brehm SD, Engle NL, Tschaplinski TJ, Doeppke C, Davis M, Westpheling J, Adams MWW. Efficient degradation of lignocellulosic plant biomass, without pretreatment, by the thermophilic anaerobe " anaerocellum thermophilum" DSM 6725. Appl Environ Microbiol 2009, 75:4762-4769. 10.1128/AEM.00236-09, 2708433, 19465524.
31. Lochner A, Giannone RJ, Keller M, Antranikian G, Graham DE, Hettich RL. Label-free quantitative proteomics for the extremely thermophilic bacterium caldicellulosiruptor obsidiansis reveal distinct abundance patterns upon growth on cellobiose, crystalline cellulose, and switchgrass. J Proteome Res 2011, 10:5302-5314. 10.1021/pr200536j, 21988591.
32. Pason P, Kyu KL, Ratanakhanokchai K. Paenibacillus curdlanolyticus strain B-6 xylanolytic-cellulolytic enzyme system that degrades insoluble polysaccharides. Appl Environ Microbiol 2006, 72:2483-2490. 10.1128/AEM.72.4.2483-2490.2006, 1448999, 16597947.
33. Beaugrand J, Croner D, Debeire P, Chabbert B. Arabinoxylan and hydroxycinnamate content of wheat bran in relation to endoxylanase susceptibility. J Cereal Sci 2004, 40:223-230.
34. Lequart C, Nuzillard JM, Kurek B, Debeire P. Hydrolysis of wheat bran and straw by an endoxylanase: production and structural characterization of cinnamoyl-oligosaccharides. Carbohydr Res 1999, 319:102-111. 10.1016/S0008-6215(99)00110-X, 10520258.
35. Fukuda M, Watanabe S, Yoshida S, Itoh H, Itoh Y, Kamio Y, Kaneko J. Cell surface xylanases of the glycoside hydrolase family 10 Are essential for xylan utilization by paenibacillus sp W-61 as generators of xylo-oligosaccharide inducers for the xylanase genes. J Bacteriol 2010, 192:2210-2219. 10.1128/JB.01406-09, 2849441, 20154127.
36. Fontes CM, Gilbert HJ, Hazlewood GP, Clarke JH, Prates JA, McKie VA, Nagy T, Fernandes TH, Ferreira LM. A novel cellvibrio mixtus family 10 xylanase that is both intracellular and expressed under non-inducing conditions. Microbiology 2000, 146(Pt 8):1959-1967.
37. Teplitsky A, Shulami S, Moryles S, Shoham Y, Shoham G. Crystallization and preliminary X-ray analysis of an intracellular xylanase from Bacillus stearothermophilus T-6. Acta Crystallogr D: Biol Crystallogr 2000, 56:181-184.
38. Shulami S, Gat O, Sonenshein AL, Shoham Y. The glucuronic acid utilization gene cluster from bacillus stearothermophilus T-6. J Bacteriol 1999, 181:3695-3704. 93846, 10368143.
39. Chundawat SPS, Lipton MS, Purvine SO, Uppugundla N, Gao D, Balan V, Dale BE. Proteomics-based compositional analysis of complex cellulase-hemicellulase mixtures. J Proteome Res 2011, 10:4365-4372. 10.1021/pr101234z, 21678892.
40. Bouws H, Wattenberg A, Zorn H. Fungal secretomes - nature's toolbox for white biotechnology. Appl Microbiol Biotechnol 2008, 80:381-388. 10.1007/s00253-008-1572-5, 18636256.
41. Skinner KA, Leathers TD. Bacterial contaminants of fuel ethanol production. J Ind Microbiol Biotechnol 2004, 31:401-408. 10.1007/s10295-004-0159-0, 15338420.
42. Adav SS, Ng CS, Arulmani M, Sze SK. Quantitative iTRAQ secretome analysis of cellulolytic thermobifida fusca. J Proteome Res 2010, 9:3016-3024. 10.1021/pr901174z, 20408570.
43. Li JB, Cai SC, Luo YM, Dong XZ. Three feruloyl esterases in cellulosilyticum ruminicola H1 Act synergistically to hydrolyze esterified polysaccharides. Appl Environ Microbiol 2011, 77:6141-6147. 10.1128/AEM.00657-11, 3165382, 21764976.
44. Pouvreau L, Jonathan MC, Kabel MA, Hinz SWA, Gruppen H, Schols HA. Characterization and mode of action of two acetyl xylan esterases from Chrysosporium lucknowense C1 active towards acetylated xylans. Enzyme Microb Technol 2011, 49:312-320. 10.1016/j.enzmictec.2011.05.010, 22112517.
45. Bradford MM. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem JT Analytical biochem 1976, 72:248-254.
46. Kidby DK, Davidson DJ. A convenient ferricyanide estimation of reducing sugars in the nanomole range. Anal Biochem 1973, 55:321-325. 10.1016/0003-2697(73)90323-0, 4753157.