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Volumn 14, Issue 1, 2013, Pages

Transcriptome comparison and gene coexpression network analysis provide a systems view of citrus response to 'Candidatus Liberibacter asiaticus' infection

Author keywords

[No Author keywords available]

Indexed keywords

CARBOHYDRATE; NITROGEN; TRANSCRIPTOME; ZINC BINDING PROTEIN; ZINC TRANSPORTER;

EID: 84872187929     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-14-27     Document Type: Article
Times cited : (62)

References (60)
  • 1
    • 0347330070 scopus 로고
    • Citrus yellow shoot disease (huanglongbing) in China-a. Review
    • Zhao XY. Citrus yellow shoot disease (huanglongbing) in China-a. Review. Proc Int Citriculture 1981, 1:466-469.
    • (1981) Proc Int Citriculture , vol.1 , pp. 466-469
    • Zhao, X.Y.1
  • 2
  • 4
    • 67650447697 scopus 로고    scopus 로고
    • Complete genome sequence of citrus huanglongbing bacterium, 'Candidatus Liberibacter asiaticus' obtained through metagenomics
    • 10.1094/MPMI-22-8-1011, 19589076
    • Duan Y, Zhou L, Hall DG, Li W, Doddapaneni H, Lin H, Liu L, Vahling CM, Gabriel DW, Williams KP, et al. Complete genome sequence of citrus huanglongbing bacterium, 'Candidatus Liberibacter asiaticus' obtained through metagenomics. Mol Plant Microbe Interact 2009, 22(8):1011-1020. 10.1094/MPMI-22-8-1011, 19589076.
    • (2009) Mol Plant Microbe Interact , vol.22 , Issue.8 , pp. 1011-1020
    • Duan, Y.1    Zhou, L.2    Hall, D.G.3    Li, W.4    Doddapaneni, H.5    Lin, H.6    Liu, L.7    Vahling, C.M.8    Gabriel, D.W.9    Williams, K.P.10
  • 5
    • 58149216356 scopus 로고    scopus 로고
    • Response of sweet orange (Citrus sinensis) to 'Candidatus Liberibacter asiaticus' infection: microscopy and microarray analyses
    • 10.1094/PHYTO-99-1-0050, 19055434
    • Kim JS, Sagaram US, Burns JK, Li JL, Wang N. Response of sweet orange (Citrus sinensis) to 'Candidatus Liberibacter asiaticus' infection: microscopy and microarray analyses. Phytopathology 2009, 99(1):50-57. 10.1094/PHYTO-99-1-0050, 19055434.
    • (2009) Phytopathology , vol.99 , Issue.1 , pp. 50-57
    • Kim, J.S.1    Sagaram, U.S.2    Burns, J.K.3    Li, J.L.4    Wang, N.5
  • 7
    • 84862705255 scopus 로고    scopus 로고
    • Callose deposition in the phloem plasmodesmata and inhibition of phloem transport in citrus leaves infected with " Candidatus Liberibacter asiaticus"
    • 10.1007/s00709-011-0312-3, 21874517
    • Koh EJ, Zhou L, Williams DS, Park J, Ding N, Duan YP, Kang BH. Callose deposition in the phloem plasmodesmata and inhibition of phloem transport in citrus leaves infected with " Candidatus Liberibacter asiaticus" Protoplasma 2012, 249:687-697. 10.1007/s00709-011-0312-3, 21874517.
    • (2012) Protoplasma , vol.249 , pp. 687-697
    • Koh, E.J.1    Zhou, L.2    Williams, D.S.3    Park, J.4    Ding, N.5    Duan, Y.P.6    Kang, B.H.7
  • 8
    • 78149347717 scopus 로고    scopus 로고
    • Changes in carbohydrate metabolism in Citrus sinensis infected with 'Candidatus Liberibacter asiaticus'
    • Fan J, Chen C, Brlansky RH, Gmitter FG, Li ZG. Changes in carbohydrate metabolism in Citrus sinensis infected with 'Candidatus Liberibacter asiaticus'. Plant Pathol 2010, 59:1037-1043.
    • (2010) Plant Pathol , vol.59 , pp. 1037-1043
    • Fan, J.1    Chen, C.2    Brlansky, R.H.3    Gmitter, F.G.4    Li, Z.G.5
  • 9
    • 72949102140 scopus 로고    scopus 로고
    • Examination of the responses of different genotypes of citrus to huanglongbing (citrus greening) under different conditions
    • 10.1094/PHYTO-99-12-1346, 19900000
    • Folimonova SY, Robertson CJ, Garnsey SM, Gowda S, Dawson WO. Examination of the responses of different genotypes of citrus to huanglongbing (citrus greening) under different conditions. Phytopathology 2009, 99(12):1346-1354. 10.1094/PHYTO-99-12-1346, 19900000.
    • (2009) Phytopathology , vol.99 , Issue.12 , pp. 1346-1354
    • Folimonova, S.Y.1    Robertson, C.J.2    Garnsey, S.M.3    Gowda, S.4    Dawson, W.O.5
  • 10
    • 47549114823 scopus 로고    scopus 로고
    • Gene expression in Citrus sinensis (L.) Osbeck following infection with the bacterial pathogen Candidatus Liberibacter asiaticus causing Huanglongbing in Florida
    • Albrecht U, Bowman KD. Gene expression in Citrus sinensis (L.) Osbeck following infection with the bacterial pathogen Candidatus Liberibacter asiaticus causing Huanglongbing in Florida. Plant Sci 2008, 175:291-306.
    • (2008) Plant Sci , vol.175 , pp. 291-306
    • Albrecht, U.1    Bowman, K.D.2
  • 11
    • 80053635374 scopus 로고    scopus 로고
    • Comparative iTRAQ proteome and transcriptome analyses of sweet orange infected by " Candidatus Liberibacter asiaticus"
    • 10.1111/j.1399-3054.2011.01502.x, 21838733
    • Fan J, Chen C, Yu Q, Brlansky RH, Li ZG, Gmitter FG. Comparative iTRAQ proteome and transcriptome analyses of sweet orange infected by " Candidatus Liberibacter asiaticus" Physiol Plant 2011, 143(3):235-245. 10.1111/j.1399-3054.2011.01502.x, 21838733.
    • (2011) Physiol Plant , vol.143 , Issue.3 , pp. 235-245
    • Fan, J.1    Chen, C.2    Yu, Q.3    Brlansky, R.H.4    Li, Z.G.5    Gmitter, F.G.6
  • 12
    • 84856683856 scopus 로고    scopus 로고
    • Transcriptional response of susceptible and tolerant citrus to infection with Candidatus Liberibacter asiaticus
    • Albrecht U, Bowman KD. Transcriptional response of susceptible and tolerant citrus to infection with Candidatus Liberibacter asiaticus. Plant Sci 2011, 185-186:118-130.
    • (2011) Plant Sci , vol.185-186 , pp. 118-130
    • Albrecht, U.1    Bowman, K.D.2
  • 13
    • 48249094217 scopus 로고    scopus 로고
    • A correction for estimating error when using the Local Pooled Error Statistical Test
    • 10.1093/bioinformatics/btn211, 18450812
    • Murie C, Nadon R. A correction for estimating error when using the Local Pooled Error Statistical Test. Bioinformatics 2008, 24(15):1735-1736. 10.1093/bioinformatics/btn211, 18450812.
    • (2008) Bioinformatics , vol.24 , Issue.15 , pp. 1735-1736
    • Murie, C.1    Nadon, R.2
  • 14
    • 0037324536 scopus 로고    scopus 로고
    • Quantitative nature of Arabidopsis responses during compatible and incompatible interactions with the bacterial pathogen Pseudomonas syringae
    • 10.1105/tpc.007591, 141204, 12566575
    • Tao Y, Xie Z, Chen W, Glazebrook J, Chang HS, Han B, Zhu T, Zou G, Katagiri F. Quantitative nature of Arabidopsis responses during compatible and incompatible interactions with the bacterial pathogen Pseudomonas syringae. Plant Cell 2003, 15(2):317-330. 10.1105/tpc.007591, 141204, 12566575.
    • (2003) Plant Cell , vol.15 , Issue.2 , pp. 317-330
    • Tao, Y.1    Xie, Z.2    Chen, W.3    Glazebrook, J.4    Chang, H.S.5    Han, B.6    Zhu, T.7    Zou, G.8    Katagiri, F.9
  • 15
    • 77955454185 scopus 로고    scopus 로고
    • Divergence of human and mouse brain transcriptome highlights Alzheimer disease pathways
    • 10.1073/pnas.0914257107, 2906579, 20616000
    • Miller JA, Horvath S, Geschwind DH. Divergence of human and mouse brain transcriptome highlights Alzheimer disease pathways. Proc Natl Acad Sci USA 2010, 107(28):12698-12703. 10.1073/pnas.0914257107, 2906579, 20616000.
    • (2010) Proc Natl Acad Sci USA , vol.107 , Issue.28 , pp. 12698-12703
    • Miller, J.A.1    Horvath, S.2    Geschwind, D.H.3
  • 17
    • 32044469882 scopus 로고    scopus 로고
    • The MYB transcription factor superfamily of Arabidopsis: expression analysis and phylogenetic comparison with the rice MYB family
    • 10.1007/s11103-005-2910-y, 16463103
    • Yanhui C, Xiaoyuan Y, Kun H, Meihua L, Jigang L, Zhaofeng G, Zhiqiang L, Yunfei Z, Xiaoxiao W, Xiaoming Q, et al. The MYB transcription factor superfamily of Arabidopsis: expression analysis and phylogenetic comparison with the rice MYB family. Plant Mol Biol 2006, 60(1):107-124. 10.1007/s11103-005-2910-y, 16463103.
    • (2006) Plant Mol Biol , vol.60 , Issue.1 , pp. 107-124
    • Yanhui, C.1    Xiaoyuan, Y.2    Kun, H.3    Meihua, L.4    Jigang, L.5    Zhaofeng, G.6    Zhiqiang, L.7    Yunfei, Z.8    Xiaoxiao, W.9    Xiaoming, Q.10
  • 18
    • 36749100622 scopus 로고    scopus 로고
    • The developmental selector AS1 is an evolutionarily conserved regulator of the plant immune response
    • 10.1073/pnas.0705586104, 2141856, 18003921
    • Nurmberg PL, Knox KA, Yun BW, Morris PC, Shafiei R, Hudson A, Loake GJ. The developmental selector AS1 is an evolutionarily conserved regulator of the plant immune response. Proc Natl Acad Sci USA 2007, 104(47):18795-18800. 10.1073/pnas.0705586104, 2141856, 18003921.
    • (2007) Proc Natl Acad Sci USA , vol.104 , Issue.47 , pp. 18795-18800
    • Nurmberg, P.L.1    Knox, K.A.2    Yun, B.W.3    Morris, P.C.4    Shafiei, R.5    Hudson, A.6    Loake, G.J.7
  • 19
    • 51949088978 scopus 로고    scopus 로고
    • BetaC1, the pathogenicity factor of TYLCCNV, interacts with AS1 to alter leaf development and suppress selective jasmonic acid responses
    • 10.1101/gad.1682208, 2546693, 18794352
    • Yang JY, Iwasaki M, Machida C, Machida Y, Zhou X, Chua NH. betaC1, the pathogenicity factor of TYLCCNV, interacts with AS1 to alter leaf development and suppress selective jasmonic acid responses. Genes Dev 2008, 22(18):2564-2577. 10.1101/gad.1682208, 2546693, 18794352.
    • (2008) Genes Dev , vol.22 , Issue.18 , pp. 2564-2577
    • Yang, J.Y.1    Iwasaki, M.2    Machida, C.3    Machida, Y.4    Zhou, X.5    Chua, N.H.6
  • 20
    • 27144492877 scopus 로고    scopus 로고
    • Loss of the CONSTITUTIVE PHOTOMORPHOGENIC9 signalosome subunit 5 is sufficient to cause the cop/det/fus mutant phenotype in Arabidopsis
    • 10.1105/tpc.105.032870, 1167545, 15923347
    • Dohmann EM, Kuhnle C, Schwechheimer C. Loss of the CONSTITUTIVE PHOTOMORPHOGENIC9 signalosome subunit 5 is sufficient to cause the cop/det/fus mutant phenotype in Arabidopsis. Plant Cell 2005, 17(7):1967-1978. 10.1105/tpc.105.032870, 1167545, 15923347.
    • (2005) Plant Cell , vol.17 , Issue.7 , pp. 1967-1978
    • Dohmann, E.M.1    Kuhnle, C.2    Schwechheimer, C.3
  • 21
    • 79960957705 scopus 로고    scopus 로고
    • Independently evolved virulence effectors converge onto hubs in a plant immune system network
    • 10.1126/science.1203659, 3170753, 21798943
    • Mukhtar MS, Carvunis AR, Dreze M, Epple P, Steinbrenner J, Moore J, Tasan M, Galli M, Hao T, Nishimura MT, et al. Independently evolved virulence effectors converge onto hubs in a plant immune system network. Science 2011, 333(6042):596-601. 10.1126/science.1203659, 3170753, 21798943.
    • (2011) Science , vol.333 , Issue.6042 , pp. 596-601
    • Mukhtar, M.S.1    Carvunis, A.R.2    Dreze, M.3    Epple, P.4    Steinbrenner, J.5    Moore, J.6    Tasan, M.7    Galli, M.8    Hao, T.9    Nishimura, M.T.10
  • 22
    • 77954299992 scopus 로고    scopus 로고
    • AgriGO: a GO analysis toolkit for the agricultural community
    • 10.1093/nar/gkq310, 2896167, 20435677
    • Du Z, Zhou X, Ling Y, Zhang Z, Su Z. agriGO: a GO analysis toolkit for the agricultural community. Nucleic Acids Res 2010, 38:W64-W70. 10.1093/nar/gkq310, 2896167, 20435677.
    • (2010) Nucleic Acids Res , vol.38
    • Du, Z.1    Zhou, X.2    Ling, Y.3    Zhang, Z.4    Su, Z.5
  • 23
    • 33745626459 scopus 로고    scopus 로고
    • Improved scoring of functional groups from gene expression data by decorrelating GO graph structure
    • 10.1093/bioinformatics/btl140, 16606683
    • Alexa A, Rahnenfuhrer J, Lengauer T. Improved scoring of functional groups from gene expression data by decorrelating GO graph structure. Bioinformatics 2006, 22(13):1600-1607. 10.1093/bioinformatics/btl140, 16606683.
    • (2006) Bioinformatics , vol.22 , Issue.13 , pp. 1600-1607
    • Alexa, A.1    Rahnenfuhrer, J.2    Lengauer, T.3
  • 25
    • 69949097909 scopus 로고    scopus 로고
    • Salicylic Acid, a multifaceted hormone to combat disease
    • 10.1146/annurev.phyto.050908.135202, 19400653
    • Vlot AC, Dempsey DA, Klessig DF. Salicylic Acid, a multifaceted hormone to combat disease. Annu Rev Phytopathol 2009, 47:177-206. 10.1146/annurev.phyto.050908.135202, 19400653.
    • (2009) Annu Rev Phytopathol , vol.47 , pp. 177-206
    • Vlot, A.C.1    Dempsey, D.A.2    Klessig, D.F.3
  • 27
    • 0037162521 scopus 로고    scopus 로고
    • A R2R3-MYB gene, AtMYB30, acts as a positive regulator of the hypersensitive cell death program in plants in response to pathogen attack
    • 10.1073/pnas.152047199, 126644, 12119395
    • Vailleau F, Daniel X, Tronchet M, Montillet JL, Triantaphylides C, Roby D. A R2R3-MYB gene, AtMYB30, acts as a positive regulator of the hypersensitive cell death program in plants in response to pathogen attack. Proc Natl Acad Sci USA 2002, 99(15):10179-10184. 10.1073/pnas.152047199, 126644, 12119395.
    • (2002) Proc Natl Acad Sci USA , vol.99 , Issue.15 , pp. 10179-10184
    • Vailleau, F.1    Daniel, X.2    Tronchet, M.3    Montillet, J.L.4    Triantaphylides, C.5    Roby, D.6
  • 28
    • 78650148237 scopus 로고    scopus 로고
    • Transcriptional reprogramming regulated by WRKY18 and WRKY40 facilitates powdery mildew infection of Arabidopsis
    • 10.1111/j.1365-313X.2010.04387.x, 21143673
    • Pandey SP, Roccaro M, Schon M, Logemann E, Somssich IE. Transcriptional reprogramming regulated by WRKY18 and WRKY40 facilitates powdery mildew infection of Arabidopsis. Plant J 2010, 64(6):912-923. 10.1111/j.1365-313X.2010.04387.x, 21143673.
    • (2010) Plant J , vol.64 , Issue.6 , pp. 912-923
    • Pandey, S.P.1    Roccaro, M.2    Schon, M.3    Logemann, E.4    Somssich, I.E.5
  • 29
    • 33745618707 scopus 로고    scopus 로고
    • Ubiquitination-mediated protein degradation and modification: an emerging theme in plant-microbe interactions
    • 10.1038/sj.cr.7310053, 16699537
    • Zeng LR, Vega-Sanchez ME, Zhu T, Wang GL. Ubiquitination-mediated protein degradation and modification: an emerging theme in plant-microbe interactions. Cell Res 2006, 16(5):413-426. 10.1038/sj.cr.7310053, 16699537.
    • (2006) Cell Res , vol.16 , Issue.5 , pp. 413-426
    • Zeng, L.R.1    Vega-Sanchez, M.E.2    Zhu, T.3    Wang, G.L.4
  • 30
    • 79955642715 scopus 로고    scopus 로고
    • The cullin-RING ubiquitin-protein ligases
    • 10.1146/annurev-arplant-042809-112256, 21370976
    • Hua Z, Vierstra RD. The cullin-RING ubiquitin-protein ligases. Annu Rev Plant Biol 2011, 62:299-334. 10.1146/annurev-arplant-042809-112256, 21370976.
    • (2011) Annu Rev Plant Biol , vol.62 , pp. 299-334
    • Hua, Z.1    Vierstra, R.D.2
  • 31
    • 79961184467 scopus 로고    scopus 로고
    • The pepper E3 ubiquitin ligase RING1 gene, CaRING1, is required for cell death and the salicylic acid-dependent defense response
    • 10.1104/pp.111.177568, 3149946, 21628629
    • Lee DH, Choi HW, Hwang BK. The pepper E3 ubiquitin ligase RING1 gene, CaRING1, is required for cell death and the salicylic acid-dependent defense response. Plant Physiol 2011, 156(4):2011-2025. 10.1104/pp.111.177568, 3149946, 21628629.
    • (2011) Plant Physiol , vol.156 , Issue.4 , pp. 2011-2025
    • Lee, D.H.1    Choi, H.W.2    Hwang, B.K.3
  • 32
    • 79955985425 scopus 로고    scopus 로고
    • WRKY transcription factors involved in activation of SA biosynthesis genes
    • 10.1186/1471-2229-11-89, 3120740, 21595875
    • van Verk MC, Bol JF, Linthorst HJ. WRKY transcription factors involved in activation of SA biosynthesis genes. BMC Plant Biol 2011, 11:89. 10.1186/1471-2229-11-89, 3120740, 21595875.
    • (2011) BMC Plant Biol , vol.11 , pp. 89
    • van Verk, M.C.1    Bol, J.F.2    Linthorst, H.J.3
  • 33
    • 0033020734 scopus 로고    scopus 로고
    • EDS1, an essential component of R gene-mediated disease resistance in Arabidopsis has homology to eukaryotic lipases
    • 10.1073/pnas.96.6.3292, 15935, 10077677
    • Falk A, Feys BJ, Frost LN, Jones JD, Daniels MJ, Parker JE. EDS1, an essential component of R gene-mediated disease resistance in Arabidopsis has homology to eukaryotic lipases. Proc Natl Acad Sci USA 1999, 96(6):3292-3297. 10.1073/pnas.96.6.3292, 15935, 10077677.
    • (1999) Proc Natl Acad Sci USA , vol.96 , Issue.6 , pp. 3292-3297
    • Falk, A.1    Feys, B.J.2    Frost, L.N.3    Jones, J.D.4    Daniels, M.J.5    Parker, J.E.6
  • 34
    • 81755187286 scopus 로고    scopus 로고
    • SAG101 forms a ternary complex with EDS1 and PAD4 and is required for resistance signaling against turnip crinkle virus
    • 10.1371/journal.ppat.1002318, 3207898, 22072959
    • Zhu S, Jeong RD, Venugopal SC, Lapchyk L, Navarre D, Kachroo A, Kachroo P. SAG101 forms a ternary complex with EDS1 and PAD4 and is required for resistance signaling against turnip crinkle virus. PLoS Pathog 2011, 7(11):e1002318. 10.1371/journal.ppat.1002318, 3207898, 22072959.
    • (2011) PLoS Pathog , vol.7 , Issue.11
    • Zhu, S.1    Jeong, R.D.2    Venugopal, S.C.3    Lapchyk, L.4    Navarre, D.5    Kachroo, A.6    Kachroo, P.7
  • 35
    • 0036006189 scopus 로고    scopus 로고
    • An EDS1 orthologue is required for N-mediated resistance against tobacco mosaic virus
    • 10.1046/j.1365-313X.2002.029005569.x, 11874570
    • Peart JR, Cook G, Feys BJ, Parker JE, Baulcombe DC. An EDS1 orthologue is required for N-mediated resistance against tobacco mosaic virus. Plant J 2002, 29(5):569-579. 10.1046/j.1365-313X.2002.029005569.x, 11874570.
    • (2002) Plant J , vol.29 , Issue.5 , pp. 569-579
    • Peart, J.R.1    Cook, G.2    Feys, B.J.3    Parker, J.E.4    Baulcombe, D.C.5
  • 36
    • 21044441356 scopus 로고    scopus 로고
    • EDS1 in tomato is required for resistance mediated by TIR-class R genes and the receptor-like R gene Ve
    • 10.1111/j.1365-313X.2005.02380.x, 15842623
    • Hu G, DeHart AK, Li Y, Ustach C, Handley V, Navarre R, Hwang CF, Aegerter BJ, Williamson VM, Baker B. EDS1 in tomato is required for resistance mediated by TIR-class R genes and the receptor-like R gene Ve. Plant J 2005, 42(3):376-391. 10.1111/j.1365-313X.2005.02380.x, 15842623.
    • (2005) Plant J , vol.42 , Issue.3 , pp. 376-391
    • Hu, G.1    DeHart, A.K.2    Li, Y.3    Ustach, C.4    Handley, V.5    Navarre, R.6    Hwang, C.F.7    Aegerter, B.J.8    Williamson, V.M.9    Baker, B.10
  • 37
    • 0034047122 scopus 로고    scopus 로고
    • Fusion genetic analysis of gibberellin signaling mutants
    • 10.1046/j.1365-313X.2000.00759.x, 10849358
    • Raventos D, Meier C, Mattsson O, Jensen AB, Mundy J. Fusion genetic analysis of gibberellin signaling mutants. Plant J 2000, 22(5):427-438. 10.1046/j.1365-313X.2000.00759.x, 10849358.
    • (2000) Plant J , vol.22 , Issue.5 , pp. 427-438
    • Raventos, D.1    Meier, C.2    Mattsson, O.3    Jensen, A.B.4    Mundy, J.5
  • 38
    • 0034775953 scopus 로고    scopus 로고
    • Control of specific gene expression by gibberellin and brassinosteroid
    • 10.1104/pp.010173, 125081, 11598220
    • Bouquin T, Meier C, Foster R, Nielsen ME, Mundy J. Control of specific gene expression by gibberellin and brassinosteroid. Plant Physiol 2001, 127(2):450-458. 10.1104/pp.010173, 125081, 11598220.
    • (2001) Plant Physiol , vol.127 , Issue.2 , pp. 450-458
    • Bouquin, T.1    Meier, C.2    Foster, R.3    Nielsen, M.E.4    Mundy, J.5
  • 39
    • 55549132299 scopus 로고    scopus 로고
    • Enhanced tolerance to oxidative stress in transgenic Arabidopsis plants expressing proteins of unknown function
    • 10.1104/pp.108.124875, 2528079, 18614705
    • Luhua S, Ciftci-Yilmaz S, Harper J, Cushman J, Mittler R. Enhanced tolerance to oxidative stress in transgenic Arabidopsis plants expressing proteins of unknown function. Plant Physiol 2008, 148(1):280-292. 10.1104/pp.108.124875, 2528079, 18614705.
    • (2008) Plant Physiol , vol.148 , Issue.1 , pp. 280-292
    • Luhua, S.1    Ciftci-Yilmaz, S.2    Harper, J.3    Cushman, J.4    Mittler, R.5
  • 40
    • 0027759974 scopus 로고
    • Characterization of an Arabidopsis lipoxygenase gene responsive to methyl jasmonate and wounding
    • 10.1104/pp.103.4.1133, 159098, 8290626
    • Bell E, Mullet JE. Characterization of an Arabidopsis lipoxygenase gene responsive to methyl jasmonate and wounding. Plant Physiol 1993, 103(4):1133-1137. 10.1104/pp.103.4.1133, 159098, 8290626.
    • (1993) Plant Physiol , vol.103 , Issue.4 , pp. 1133-1137
    • Bell, E.1    Mullet, J.E.2
  • 41
    • 0029047317 scopus 로고
    • A chloroplast lipoxygenase is required for wound-induced jasmonic acid accumulation in Arabidopsis
    • 10.1073/pnas.92.19.8675, 41029, 7567995
    • Bell E, Creelman RA, Mullet JE. A chloroplast lipoxygenase is required for wound-induced jasmonic acid accumulation in Arabidopsis. Proc Natl Acad Sci USA 1995, 92(19):8675-8679. 10.1073/pnas.92.19.8675, 41029, 7567995.
    • (1995) Proc Natl Acad Sci USA , vol.92 , Issue.19 , pp. 8675-8679
    • Bell, E.1    Creelman, R.A.2    Mullet, J.E.3
  • 42
    • 66949125723 scopus 로고    scopus 로고
    • Fusarium oxysporum hijacks COI1-mediated jasmonate signaling to promote disease development in Arabidopsis
    • 10.1111/j.1365-313X.2009.03831.x, 19220788
    • Thatcher LF, Manners JM, Kazan K. Fusarium oxysporum hijacks COI1-mediated jasmonate signaling to promote disease development in Arabidopsis. Plant J 2009, 58(6):927-939. 10.1111/j.1365-313X.2009.03831.x, 19220788.
    • (2009) Plant J , vol.58 , Issue.6 , pp. 927-939
    • Thatcher, L.F.1    Manners, J.M.2    Kazan, K.3
  • 44
    • 0346664426 scopus 로고    scopus 로고
    • Diversity of the superfamily of phloem lectins (phloem protein 2) in angiosperms
    • 10.1104/pp.013086, 166792, 12529520
    • Dinant S, Clark AM, Zhu Y, Vilaine F, Palauqui JC, Kusiak C, Thompson GA. Diversity of the superfamily of phloem lectins (phloem protein 2) in angiosperms. Plant Physiol 2003, 131(1):114-128. 10.1104/pp.013086, 166792, 12529520.
    • (2003) Plant Physiol , vol.131 , Issue.1 , pp. 114-128
    • Dinant, S.1    Clark, A.M.2    Zhu, Y.3    Vilaine, F.4    Palauqui, J.C.5    Kusiak, C.6    Thompson, G.A.7
  • 45
    • 35948931439 scopus 로고    scopus 로고
    • An Arabidopsis gene network based on the graphical Gaussian model
    • 10.1101/gr.6911207, 2045144, 17921353
    • Ma S, Gong Q, Bohnert HJ. An Arabidopsis gene network based on the graphical Gaussian model. Genome Res 2007, 17(11):1614-1625. 10.1101/gr.6911207, 2045144, 17921353.
    • (2007) Genome Res , vol.17 , Issue.11 , pp. 1614-1625
    • Ma, S.1    Gong, Q.2    Bohnert, H.J.3
  • 46
    • 68849117733 scopus 로고    scopus 로고
    • Predicting protein-protein interactions in Arabidopsis thaliana through integration of orthology, gene ontology and co-expression
    • 10.1186/1471-2164-10-288, 2719670, 19563678
    • De Bodt S, Proost S, Vandepoele K, Rouze P, Van de Peer Y. Predicting protein-protein interactions in Arabidopsis thaliana through integration of orthology, gene ontology and co-expression. BMC Genomics 2009, 10:288. 10.1186/1471-2164-10-288, 2719670, 19563678.
    • (2009) BMC Genomics , vol.10 , pp. 288
    • De Bodt, S.1    Proost, S.2    Vandepoele, K.3    Rouze, P.4    Van de Peer, Y.5
  • 47
    • 71749094192 scopus 로고    scopus 로고
    • Arabidopsis gene co-expression network and its functional modules
    • Mao L, Van Hemert JL, Dash S, Dickerson JA. Arabidopsis gene co-expression network and its functional modules. BMC Bioinforma 2009, 10:346.
    • (2009) BMC Bioinforma , vol.10 , pp. 346
    • Mao, L.1    Van Hemert, J.L.2    Dash, S.3    Dickerson, J.A.4
  • 48
    • 79955631134 scopus 로고    scopus 로고
    • The predicted Arabidopsis interactome resource and network topology-based systems biology analyses
    • 10.1105/tpc.110.082529, 3082272, 21441435
    • Lin M, Zhou X, Shen X, Mao C, Chen X. The predicted Arabidopsis interactome resource and network topology-based systems biology analyses. Plant Cell 2011, 23(3):911-922. 10.1105/tpc.110.082529, 3082272, 21441435.
    • (2011) Plant Cell , vol.23 , Issue.3 , pp. 911-922
    • Lin, M.1    Zhou, X.2    Shen, X.3    Mao, C.4    Chen, X.5
  • 49
    • 79959350055 scopus 로고    scopus 로고
    • Genome-wide network model capturing seed germination reveals coordinated regulation of plant cellular phase transitions
    • 10.1073/pnas.1100958108, 3111290, 21593420
    • Bassel GW, Lan H, Glaab E, Gibbs DJ, Gerjets T, Krasnogor N, Bonner AJ, Holdsworth MJ, Provart NJ. Genome-wide network model capturing seed germination reveals coordinated regulation of plant cellular phase transitions. Proc Natl Acad Sci USA 2011, 108(23):9709-9714. 10.1073/pnas.1100958108, 3111290, 21593420.
    • (2011) Proc Natl Acad Sci USA , vol.108 , Issue.23 , pp. 9709-9714
    • Bassel, G.W.1    Lan, H.2    Glaab, E.3    Gibbs, D.J.4    Gerjets, T.5    Krasnogor, N.6    Bonner, A.J.7    Holdsworth, M.J.8    Provart, N.J.9
  • 50
    • 79957876295 scopus 로고    scopus 로고
    • Gene coexpression clusters and putative regulatory elements underlying seed storage reserve accumulation in Arabidopsis
    • 10.1186/1471-2164-12-286, 3126783, 21635767
    • Peng FY, Weselake RJ. Gene coexpression clusters and putative regulatory elements underlying seed storage reserve accumulation in Arabidopsis. BMC Genomics 2011, 12:286. 10.1186/1471-2164-12-286, 3126783, 21635767.
    • (2011) BMC Genomics , vol.12 , pp. 286
    • Peng, F.Y.1    Weselake, R.J.2
  • 52
    • 80055064643 scopus 로고    scopus 로고
    • Comprehensive network analysis of anther-expressed genes in rice by the combination of 33 laser microdissection and 143 spatiotemporal microarrays
    • 10.1371/journal.pone.0026162, 3202526, 22046259
    • Aya K, Suzuki G, Suwabe K, Hobo T, Takahashi H, Shiono K, Yano K, Tsutsumi N, Nakazono M, Nagamura Y, et al. Comprehensive network analysis of anther-expressed genes in rice by the combination of 33 laser microdissection and 143 spatiotemporal microarrays. PLoS One 2011, 6(10):e26162. 10.1371/journal.pone.0026162, 3202526, 22046259.
    • (2011) PLoS One , vol.6 , Issue.10
    • Aya, K.1    Suzuki, G.2    Suwabe, K.3    Hobo, T.4    Takahashi, H.5    Shiono, K.6    Yano, K.7    Tsutsumi, N.8    Nakazono, M.9    Nagamura, Y.10
  • 53
    • 70350633831 scopus 로고    scopus 로고
    • The nematode resistance allele at the rhg1 locus alters the proteome and primary metabolism of soybean roots
    • 10.1104/pp.109.138149, 2773059, 19429603
    • Afzal AJ, Natarajan A, Saini N, Iqbal MJ, Geisler M, El Shemy HA, Mungur R, Willmitzer L, Lightfoot DA. The nematode resistance allele at the rhg1 locus alters the proteome and primary metabolism of soybean roots. Plant Physiol 2009, 151(3):1264-1280. 10.1104/pp.109.138149, 2773059, 19429603.
    • (2009) Plant Physiol , vol.151 , Issue.3 , pp. 1264-1280
    • Afzal, A.J.1    Natarajan, A.2    Saini, N.3    Iqbal, M.J.4    Geisler, M.5    El Shemy, H.A.6    Mungur, R.7    Willmitzer, L.8    Lightfoot, D.A.9
  • 54
    • 79956139639 scopus 로고    scopus 로고
    • Global landscape of a co-expressed gene network in barley and its application to gene discovery in Triticeae crops
    • 10.1093/pcp/pcr035, 3093127, 21441235
    • Mochida K, Uehara-Yamaguchi Y, Yoshida T, Sakurai T, Shinozaki K. Global landscape of a co-expressed gene network in barley and its application to gene discovery in Triticeae crops. Plant Cell Physiol 2011, 52(5):785-803. 10.1093/pcp/pcr035, 3093127, 21441235.
    • (2011) Plant Cell Physiol , vol.52 , Issue.5 , pp. 785-803
    • Mochida, K.1    Uehara-Yamaguchi, Y.2    Yoshida, T.3    Sakurai, T.4    Shinozaki, K.5
  • 56
    • 78651303570 scopus 로고    scopus 로고
    • Harpin-induced expression and transgenic overexpression of the phloem protein gene AtPP2-A1 in Arabidopsis repress phloem feeding of the green peach aphid Myzus persicae
    • 10.1186/1471-2229-11-11, 3030531, 21226963
    • Zhang C, Shi H, Chen L, Wang X, Lu B, Zhang S, Liang Y, Liu R, Qian J, Sun W, et al. Harpin-induced expression and transgenic overexpression of the phloem protein gene AtPP2-A1 in Arabidopsis repress phloem feeding of the green peach aphid Myzus persicae. BMC Plant Biol 2011, 11:11. 10.1186/1471-2229-11-11, 3030531, 21226963.
    • (2011) BMC Plant Biol , vol.11 , pp. 11
    • Zhang, C.1    Shi, H.2    Chen, L.3    Wang, X.4    Lu, B.5    Zhang, S.6    Liang, Y.7    Liu, R.8    Qian, J.9    Sun, W.10
  • 57
    • 78650335757 scopus 로고    scopus 로고
    • Predictive network modeling of the high-resolution dynamic plant transcriptome in response to nitrate
    • 10.1186/gb-2010-11-12-r123, 3046483, 21182762
    • Krouk G, Mirowski P, LeCun Y, Shasha DE, Coruzzi GM. Predictive network modeling of the high-resolution dynamic plant transcriptome in response to nitrate. Genome Biol 2010, 11(12):R123. 10.1186/gb-2010-11-12-r123, 3046483, 21182762.
    • (2010) Genome Biol , vol.11 , Issue.12
    • Krouk, G.1    Mirowski, P.2    LeCun, Y.3    Shasha, D.E.4    Coruzzi, G.M.5
  • 58
    • 0037316303 scopus 로고    scopus 로고
    • A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
    • 10.1093/bioinformatics/19.2.185, 12538238
    • Bolstad BM, Irizarry RA, Astrand M, Speed TP. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 2003, 19(2):185-193. 10.1093/bioinformatics/19.2.185, 12538238.
    • (2003) Bioinformatics , vol.19 , Issue.2 , pp. 185-193
    • Bolstad, B.M.1    Irizarry, R.A.2    Astrand, M.3    Speed, T.P.4
  • 59
    • 60549111634 scopus 로고    scopus 로고
    • WGCNA: an R package for weighted correlation network analysis
    • Langfelder P, Horvath S. WGCNA: an R package for weighted correlation network analysis. BMC Bioinforma 2008, 9:559.
    • (2008) BMC Bioinforma , vol.9 , pp. 559
    • Langfelder, P.1    Horvath, S.2
  • 60
    • 79551587720 scopus 로고    scopus 로고
    • Cytoscape 2.8: new features for data integration and network visualization
    • 10.1093/bioinformatics/btq675, 3031041, 21149340
    • Smoot ME, Ono K, Ruscheinski J, Wang PL, Ideker T. Cytoscape 2.8: new features for data integration and network visualization. Bioinformatics 2011, 27(3):431-432. 10.1093/bioinformatics/btq675, 3031041, 21149340.
    • (2011) Bioinformatics , vol.27 , Issue.3 , pp. 431-432
    • Smoot, M.E.1    Ono, K.2    Ruscheinski, J.3    Wang, P.L.4    Ideker, T.5


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