-
1
-
-
18344396568
-
Minimum information about a microarray experiment (MIAME)-toward standards for microarray data
-
10.1038/ng1201-365, 11726920
-
Brazma A, Hingamp P, Quackenbush J, Sherlock G, Spellman P, Stoeckert C, Aach J, Ansorge W, Ball CA, Causton HC, Gaasterland T, Glenisson P, Holstege FC, Kim IF, Markowitz V, Matese JC, Parkinson H, Robinson A, Sarkans U, Schulze-Kremer S, Stewart J, Taylor R, Vilo J, Vingron M. Minimum information about a microarray experiment (MIAME)-toward standards for microarray data. Nat Genet 2001, 29:365-371. 10.1038/ng1201-365, 11726920.
-
(2001)
Nat Genet
, vol.29
, pp. 365-371
-
-
Brazma, A.1
Hingamp, P.2
Quackenbush, J.3
Sherlock, G.4
Spellman, P.5
Stoeckert, C.6
Aach, J.7
Ansorge, W.8
Ball, C.A.9
Causton, H.C.10
Gaasterland, T.11
Glenisson, P.12
Holstege, F.C.13
Kim, I.F.14
Markowitz, V.15
Matese, J.C.16
Parkinson, H.17
Robinson, A.18
Sarkans, U.19
Schulze-Kremer, S.20
Stewart, J.21
Taylor, R.22
Vilo, J.23
Vingron, M.24
more..
-
2
-
-
33750345305
-
Minimum reporting requirements for proteomics: a MIAPE primer
-
Taylor CF. Minimum reporting requirements for proteomics: a MIAPE primer. Proteomics 2006, 6(Suppl 2):39-44.
-
(2006)
Proteomics
, vol.6
, Issue.SUPPL. 2
, pp. 39-44
-
-
Taylor, C.F.1
-
3
-
-
77955290526
-
IDOMAL: an ontology for malaria
-
10.1186/1475-2875-9-230, 2925367, 20698959
-
Topalis P, Mitraka E, Bujila I, Deligianni E, Dialynas E, Siden-Kiamos I, Troye-Blomberg M, Louis C. IDOMAL: an ontology for malaria. Malar J 2010, 9:230. 10.1186/1475-2875-9-230, 2925367, 20698959.
-
(2010)
Malar J
, vol.9
, pp. 230
-
-
Topalis, P.1
Mitraka, E.2
Bujila, I.3
Deligianni, E.4
Dialynas, E.5
Siden-Kiamos, I.6
Troye-Blomberg, M.7
Louis, C.8
-
5
-
-
67849128700
-
BioPortal: ontologies and integrated data resources at the click of a mouse
-
10.1093/nar/gkp440, 2703982, 19483092
-
Noy NF, Shah NH, Whetzel PL, Dai B, Dorf M, Griffith N, Jonquet C, Rubin DL, Storey M-A, Chute CG, Musen MA. BioPortal: ontologies and integrated data resources at the click of a mouse. Nucleic Acids Res 2009, 37:W170-173. 10.1093/nar/gkp440, 2703982, 19483092.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Noy, N.F.1
Shah, N.H.2
Whetzel, P.L.3
Dai, B.4
Dorf, M.5
Griffith, N.6
Jonquet, C.7
Rubin, D.L.8
Storey, M.-A.9
Chute, C.G.10
Musen, M.A.11
-
6
-
-
79960150256
-
RightField: embedding ontology annotation in spreadsheets
-
10.1093/bioinformatics/btr312, 21622664
-
Wolstencroft K, Owen S, Horridge M, Krebs O, Mueller W, Snoep JL, du Preez F, Goble C. RightField: embedding ontology annotation in spreadsheets. Bioinformatics 2011, 27:2021-2022. 10.1093/bioinformatics/btr312, 21622664.
-
(2011)
Bioinformatics
, vol.27
, pp. 2021-2022
-
-
Wolstencroft, K.1
Owen, S.2
Horridge, M.3
Krebs, O.4
Mueller, W.5
Snoep, J.L.6
du Preez, F.7
Goble, C.8
-
7
-
-
34247587012
-
Genetics. Getting closer to the whole picture
-
10.1126/science.1142502, 17463274
-
Sauer U, Heinemann M, Zamboni N. Genetics. Getting closer to the whole picture. Science 2007, 316:550-551. 10.1126/science.1142502, 17463274.
-
(2007)
Science
, vol.316
, pp. 550-551
-
-
Sauer, U.1
Heinemann, M.2
Zamboni, N.3
-
8
-
-
75549085494
-
Gene expression atlas at the European bioinformatics institute
-
10.1093/nar/gkp936, 2808905, 19906730
-
Kapushesky M, Emam I, Holloway E, Kurnosov P, Zorin A, Malone J, Rustici G, Williams E, Parkinson H, Brazma A. Gene expression atlas at the European bioinformatics institute. Nucleic Acids Res 2010, 38:D690-698. 10.1093/nar/gkp936, 2808905, 19906730.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Kapushesky, M.1
Emam, I.2
Holloway, E.3
Kurnosov, P.4
Zorin, A.5
Malone, J.6
Rustici, G.7
Williams, E.8
Parkinson, H.9
Brazma, A.10
-
9
-
-
33846039701
-
ArrayExpress--a public database of microarray experiments and gene expression profiles
-
10.1093/nar/gkl995, 1716725, 17132828
-
Parkinson H, Kapushesky M, Shojatalab M, Abeygunawardena N, Coulson R, Farne A, Holloway E, Kolesnykov N, Lilja P, Lukk M, Mani R, Rayner T, Sharma A, William E, Sarkans U, Brazma A. ArrayExpress--a public database of microarray experiments and gene expression profiles. Nucleic Acids Res 2007, 35:D747-750. 10.1093/nar/gkl995, 1716725, 17132828.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Parkinson, H.1
Kapushesky, M.2
Shojatalab, M.3
Abeygunawardena, N.4
Coulson, R.5
Farne, A.6
Holloway, E.7
Kolesnykov, N.8
Lilja, P.9
Lukk, M.10
Mani, R.11
Rayner, T.12
Sharma, A.13
William, E.14
Sarkans, U.15
Brazma, A.16
-
10
-
-
84873742726
-
Omixed
-
Omixed. http://www.omixed.org.
-
-
-
-
11
-
-
45749145794
-
The first RSBI (ISA-TAB) workshop: " can a simple format work for complex studies?"
-
10.1089/omi.2008.0019, 18447634
-
Sansone S-A, Rocca-Serra P, Brandizi M, Brazma A, Field D, Fostel J, Garrow AG, Gilbert J, Goodsaid F, Hardy N, Jones P, Lister A, Miller M, Morrison N, Rayner T, Sklyar N, Taylor C, Tong W, Warner G, Wiemann S. The first RSBI (ISA-TAB) workshop: " can a simple format work for complex studies?" OMICS 2008, 12:143-149. 10.1089/omi.2008.0019, 18447634.
-
(2008)
OMICS
, vol.12
, pp. 143-149
-
-
Sansone, S.-A.1
Rocca-Serra, P.2
Brandizi, M.3
Brazma, A.4
Field, D.5
Fostel, J.6
Garrow, A.G.7
Gilbert, J.8
Goodsaid, F.9
Hardy, N.10
Jones, P.11
Lister, A.12
Miller, M.13
Morrison, N.14
Rayner, T.15
Sklyar, N.16
Taylor, C.17
Tong, W.18
Warner, G.19
Wiemann, S.20
more..
-
12
-
-
33845643077
-
A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB
-
10.1186/1471-2105-7-489, 1687205, 17087822
-
Rayner TF, Rocca-Serra P, Spellman PT, Causton HC, Farne A, Holloway E, Irizarry RA, Liu J, Maier DS, Miller M, Petersen K, Quackenbush J, Sherlock G, Stoeckert CJ, White J, Whetzel PL, Wymore F, Parkinson H, Sarkans U, Ball CA, Brazma A. A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB. BMC Bioinformatics 2006, 7:489. 10.1186/1471-2105-7-489, 1687205, 17087822.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 489
-
-
Rayner, T.F.1
Rocca-Serra, P.2
Spellman, P.T.3
Causton, H.C.4
Farne, A.5
Holloway, E.6
Irizarry, R.A.7
Liu, J.8
Maier, D.S.9
Miller, M.10
Petersen, K.11
Quackenbush, J.12
Sherlock, G.13
Stoeckert, C.J.14
White, J.15
Whetzel, P.L.16
Wymore, F.17
Parkinson, H.18
Sarkans, U.19
Ball, C.A.20
Brazma, A.21
more..
-
13
-
-
0037163144
-
Design and implementation of microarray gene expression markup language (MAGE-ML)
-
RESEARCH0046, 126871, 12225585
-
Spellman PT, Miller M, Stewart J, Troup C, Sarkans U, Chervitz S, Bernhart D, Sherlock G, Ball C, Lepage M, Swiatek M, Marks WL, Goncalves J, Markel S, Iordan D, Shojatalab M, Pizarro A, White J, Hubley R, Deutsch E, Senger M, Aronow BJ, Robinson A, Bassett D, Stoeckert CJ, Brazma A. Design and implementation of microarray gene expression markup language (MAGE-ML). Genome Biol 2002, 3:RESEARCH0046. 126871, 12225585.
-
(2002)
Genome Biol
, vol.3
-
-
Spellman, P.T.1
Miller, M.2
Stewart, J.3
Troup, C.4
Sarkans, U.5
Chervitz, S.6
Bernhart, D.7
Sherlock, G.8
Ball, C.9
Lepage, M.10
Swiatek, M.11
Marks, W.L.12
Goncalves, J.13
Markel, S.14
Iordan, D.15
Shojatalab, M.16
Pizarro, A.17
White, J.18
Hubley, R.19
Deutsch, E.20
Senger, M.21
Aronow, B.J.22
Robinson, A.23
Bassett, D.24
Stoeckert, C.J.25
Brazma, A.26
more..
-
14
-
-
84873715441
-
MAGE-OM: An object model for the communication of microarray data
-
Chichester: John Wiley & Sons, Ltd, Jorde LB, Little PFR, Dunn MJ, Subramaniam S
-
Ball CA, Spellman PT, Miller M. MAGE-OM: An object model for the communication of microarray data. Encyclopedia of Genetics, Genomics, Proteomics and Bioinformatics 2006, Chichester: John Wiley & Sons, Ltd, Jorde LB, Little PFR, Dunn MJ, Subramaniam S.
-
(2006)
Encyclopedia of Genetics, Genomics, Proteomics and Bioinformatics
-
-
Ball, C.A.1
Spellman, P.T.2
Miller, M.3
-
15
-
-
84873744420
-
ISA Validator
-
ISA Validator. http://isatab.sourceforge.net/tools.html.
-
-
-
-
16
-
-
84873736125
-
The BioInvestigation Index
-
The BioInvestigation Index. http://www.ebi.ac.uk/bioinvindex/.
-
-
-
-
17
-
-
33645348241
-
The Ontology Lookup Service, a lightweight cross-platform tool for controlled vocabulary queries
-
10.1186/1471-2105-7-97, 1420335, 16507094
-
Côté RG, Jones P, Apweiler R, Hermjakob H. The Ontology Lookup Service, a lightweight cross-platform tool for controlled vocabulary queries. BMC Bioinformatics 2006, 7:97. 10.1186/1471-2105-7-97, 1420335, 16507094.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 97
-
-
Côté, R.G.1
Jones, P.2
Apweiler, R.3
Hermjakob, H.4
-
18
-
-
84873723426
-
The Terminizer
-
The Terminizer. http://terminizer.org/.
-
-
-
-
19
-
-
70449732423
-
BASE--2nd generation software for microarray data management and analysis
-
10.1186/1471-2105-10-330, 2768720, 19822003
-
Vallon-Christersson J, Nordborg N, Svensson M, Häkkinen J. BASE--2nd generation software for microarray data management and analysis. BMC Bioinformatics 2009, 10:330. 10.1186/1471-2105-10-330, 2768720, 19822003.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 330
-
-
Vallon-Christersson, J.1
Nordborg, N.2
Svensson, M.3
Häkkinen, J.4
-
20
-
-
67650315696
-
Bioimage informatics for experimental biology
-
10.1146/annurev.biophys.050708.133641, 3522875, 19416072
-
Swedlow JR, Goldberg IG, Eliceiri KW. Bioimage informatics for experimental biology. Annu Rev Biophys 2009, 38:327-346. 10.1146/annurev.biophys.050708.133641, 3522875, 19416072.
-
(2009)
Annu Rev Biophys
, vol.38
, pp. 327-346
-
-
Swedlow, J.R.1
Goldberg, I.G.2
Eliceiri, K.W.3
|