-
1
-
-
33748039756
-
MGED standards: Work in progress
-
Ball, C.A., and Brazma, A. (2006). MGED standards: work in progress. OMICS 10, 138-144.
-
(2006)
OMICS
, vol.10
, pp. 138-144
-
-
Ball, C.A.1
Brazma, A.2
-
2
-
-
18344396568
-
Minimum information about a microarray experiment (MIAME) - toward standards for microarray data
-
Brazma, A., Hingamp, P., Quackenbush, J., Sherlock, G., Spellman, P., Stoeckert, C., et al. (2001). Minimum information about a microarray experiment (MIAME) - toward standards for microarray data. Nat Genet 29, 365-371.
-
(2001)
Nat Genet
, vol.29
, pp. 365-371
-
-
Brazma, A.1
Hingamp, P.2
Quackenbush, J.3
Sherlock, G.4
Spellman, P.5
Stoeckert, C.6
-
3
-
-
40449117669
-
Minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE)
-
Deutsch, E.W., Ball, C.A., Berman, J.J., et al. (2006). Minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE). Nat Biotechnol 26, 305-312.
-
(2006)
Nat Biotechnol
, vol.26
, pp. 305-312
-
-
Deutsch, E.W.1
Ball, C.A.2
Berman, J.J.3
-
4
-
-
43449108562
-
The "Minimum Information about a Genome Sequence" (MIGS) specification
-
in press
-
Field, D., Garrity, G.M., Gray, T., et al. (2008a). The "Minimum Information about a Genome Sequence" (MIGS) specification. Nat Biotechnol (in press).
-
(2008)
Nat Biotechnol
-
-
Field, D.1
Garrity, G.M.2
Gray, T.3
-
5
-
-
45749085265
-
Meeting report: The 4th Genomic Standards Consortium (GSC) workshop
-
this issue
-
Field, D., Glockner, F.O., Garrity, et al. (2008b). Meeting report: The 4th Genomic Standards Consortium (GSC) workshop OMICS (this issue).
-
(2008)
OMICS
-
-
Field, D.1
Glockner, F.O.2
Garrity3
-
6
-
-
33748081440
-
A special issue on Omic data standards
-
Field, D., and Sansone, S.A. (2006). A special issue on Omic data standards. OMICS 10, 84-93.
-
(2006)
OMICS
, vol.10
, pp. 84-93
-
-
Field, D.1
Sansone, S.A.2
-
7
-
-
33748481775
-
Impact of microarray data quality on genomic data submissions to the FDA
-
Frueh, F.W. (2006). Impact of microarray data quality on genomic data submissions to the FDA. Nat Biotechnol 24, 1105-1107.
-
(2006)
Nat Biotechnol
, vol.24
, pp. 1105-1107
-
-
Frueh, F.W.1
-
8
-
-
45749121394
-
Sequencing complex marine microbial metatranscriptomes with pyrosequencing technology
-
in review
-
Gilbert, J.A., Edwards, R., Li, W., et al. (2008). Sequencing complex marine microbial metatranscriptomes with pyrosequencing technology. Nat Methods (in review).
-
(2008)
Nat Methods
-
-
Gilbert, J.A.1
Edwards, R.2
Li, W.3
-
9
-
-
35148889036
-
The Functional Genomics Experiment model (FuGE): An extensible framework for standards in functional genomics
-
Jones, A.R., Miller, M., Aebersold, R., Apweiler, R., Ball, C.A., Brazma, A., et al. (2007). The Functional Genomics Experiment model (FuGE): an extensible framework for standards in functional genomics. Nat Biotechnol 25, 1127-1133.
-
(2007)
Nat Biotechnol
, vol.25
, pp. 1127-1133
-
-
Jones, A.R.1
Miller, M.2
Aebersold, R.3
Apweiler, R.4
Ball, C.A.5
Brazma, A.6
-
10
-
-
38549117407
-
PRIDE: New developments and new datasets
-
Jones, P., Côté, R.G., Cho, S.Y., Martens, L., Quinn, A.F., Thorneycroft, D., et al. (2008). PRIDE: new developments and new datasets. Nucleic Acids Res 36, D878-D883.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Jones, P.1
Côté, R.G.2
Cho, S.Y.3
Martens, L.4
Quinn, A.F.5
Thorneycroft, D.6
-
11
-
-
45749154807
-
A standard MIGS/MIMS compliant XML schema: Towards the development of the Genomic Contextual Data Markup Language (GCDML)
-
this issue
-
Kottmann, R., Gray, T., Murphy, et al. (2008). A standard MIGS/MIMS compliant XML schema: towards the development of the Genomic Contextual Data Markup Language (GCDML). OMICS (this issue).
-
(2008)
OMICS
-
-
Kottmann, R.1
Gray, T.2
Murphy3
-
12
-
-
28644433993
-
Minimum information requested in the annotation of biochemical models (MIRIAM)
-
Le Novère, N., Finney, A., Hucka, M., Bhalla, U.S., Campagna, F., Collado-Vides, J., et al. (2005). Minimum information requested in the annotation of biochemical models (MIRIAM). Nat Biotechnol 23, 1509-1515.
-
(2005)
Nat Biotechnol
, vol.23
, pp. 1509-1515
-
-
Le Novère, N.1
Finney, A.2
Hucka, M.3
Bhalla, U.S.4
Campagna, F.5
Collado-Vides, J.6
-
13
-
-
41149167194
-
The XBabelPhish MAGE-ML and XML translator
-
Maier, D., Wymore, F., Sherlock, G., and Ball, C.A. (2008). The XBabelPhish MAGE-ML and XML translator. BMC Bioinformatics 18, 28.
-
(2008)
BMC Bioinformatics
, vol.18
, pp. 28
-
-
Maier, D.1
Wymore, F.2
Sherlock, G.3
Ball, C.A.4
-
14
-
-
45749119386
-
The HUPO proteomics standards initiative easing communication and minimizing data loss in a changing world
-
in press
-
Orchard, S., and Hermjakob, H. (2007). The HUPO proteomics standards initiative easing communication and minimizing data loss in a changing world. Brief Bioinform (in press).
-
(2007)
Brief Bioinform
-
-
Orchard, S.1
Hermjakob, H.2
-
15
-
-
33846039701
-
ArrayExpress - a public database of microarray experiments and gene expression profiles
-
Parkinson, H., Kapushesky, M., Shojatalab, M., Abeyganawardena, N., Coulson, R., Farne, A., et al. (2007). ArrayExpress - a public database of microarray experiments and gene expression profiles. Nucleic Acids Res 35, D747-D750.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Parkinson, H.1
Kapushesky, M.2
Shojatalab, M.3
Abeyganawardena, N.4
Coulson, R.5
Farne, A.6
-
16
-
-
33845643077
-
A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB
-
Rayner, T.F., Rocca-Serra, P., Spellman, P.T., Causton, H.C., Farne, A., Holloway, F., et al. (2006). A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB BMC Bioinformatics 6, 489.
-
(2006)
BMC Bioinformatics
, vol.6
, pp. 489
-
-
Rayner, T.F.1
Rocca-Serra, P.2
Spellman, P.T.3
Causton, H.C.4
Farne, A.5
Holloway, F.6
-
17
-
-
34547778398
-
The metabolomics standards initiative
-
Sansone, S.A., Fan, T., Goodacre, R., Griffin, J.L., Hardy, N.W., Kaddurah-Daouk, R., et al. (2007). The metabolomics standards initiative. Nat Biotechnol 25, 846-848.
-
(2007)
Nat Biotechnol
, vol.25
, pp. 846-848
-
-
Sansone, S.A.1
Fan, T.2
Goodacre, R.3
Griffin, J.L.4
Hardy, N.W.5
Kaddurah-Daouk, R.6
-
18
-
-
33748078772
-
A strategy capitalizing on synergies: The Reporting Structure for Biological Investigation (RSBI) working group
-
Sansone, S.A., Rocca-Serra, P., Tong, W., Fostel, J., Morrison, N., Jones, A.R., et al. (2006). A strategy capitalizing on synergies: the Reporting Structure for Biological Investigation (RSBI) working group. OMICS 10, 164-171.
-
(2006)
OMICS
, vol.10
, pp. 164-171
-
-
Sansone, S.A.1
Rocca-Serra, P.2
Tong, W.3
Fostel, J.4
Morrison, N.5
Jones, A.R.6
-
19
-
-
33645968113
-
Clinical genomics data standards for pharmacogenetics and pharmacogenomics
-
Shabo, A. (2006). Clinical genomics data standards for pharmacogenetics and pharmacogenomics. Pharmacogenomics 7, 247-253.
-
(2006)
Pharmacogenomics
, vol.7
, pp. 247-253
-
-
Shabo, A.1
-
20
-
-
35948989284
-
The OBO Foundry: Coordinated evolution of ontologies to support biomedical data integration
-
Smith, B., Ashburner, M., Rosse, C., Bard, J., Bag, W., Ceusters, W., et al. (2007). The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration. Nat Biotechnol 25, 1251-1255.
-
(2007)
Nat Biotechnol
, vol.25
, pp. 1251-1255
-
-
Smith, B.1
Ashburner, M.2
Rosse, C.3
Bard, J.4
Bag, W.5
Ceusters, W.6
-
21
-
-
0037163144
-
Design and implementation of microarray gene expression markup language (MAGE-ML)
-
RESEARCH0046
-
Spellman, P.T., Miller M., Stewart J., et al. (2002). Design and implementation of microarray gene expression markup language (MAGE-ML). Genome Biol 3, RESEARCH0046.
-
(2002)
Genome Biol
, vol.3
-
-
Spellman, P.T.1
Miller, M.2
Stewart, J.3
-
22
-
-
45749118607
-
Promoting coherent minimum reporting requirements for biological and biomedical investigations: The MIBBI Project
-
in press
-
Taylor, C.F., Field, D., Sansone, S.A., et al. (2008). Promoting coherent minimum reporting requirements for biological and biomedical investigations: the MIBBI Project. Nat Biotechnol (in press).
-
(2008)
Nat Biotechnol
-
-
Taylor, C.F.1
Field, D.2
Sansone, S.A.3
-
23
-
-
34249062964
-
The minimum information about a proteomics experiment (MIAPE)
-
Taylor, C.F., Paton, N.W., Lilley, K.S., Binz, P.A., Julian, R.K., Jr., Jones, A.R., et al. (2007). The minimum information about a proteomics experiment (MIAPE). Nat Biotechnol 25, 887-893.
-
(2007)
Nat Biotechnol
, vol.25
, pp. 887-893
-
-
Taylor, C.F.1
Paton, N.W.2
Lilley, K.S.3
Binz, P.A.4
Julian Jr., R.K.5
Jones, A.R.6
-
24
-
-
36849069880
-
An integrated bioinformatics infrastructure essential for advancing pharmacogenomics and personalized medicine in the context of the FDA's critical path initiative
-
Tong, W., Harris, S.C., Fang, H., et al. (2007). An integrated bioinformatics infrastructure essential for advancing pharmacogenomics and personalized medicine in the context of the FDA's critical path initiative. Drug Discov Today 4, 3-8.
-
(2007)
Drug Discov Today
, vol.4
, pp. 3-8
-
-
Tong, W.1
Harris, S.C.2
Fang, H.3
-
25
-
-
11144358192
-
Development of public toxicogenomics software for microarray data management and analysis
-
Tong, W., Harris, S., Cao, X., Fang, H., Shi, L., Fuscoe, J., et al. (2004). Development of public toxicogenomics software for microarray data management and analysis. Mutat Res 549, 241-253.
-
(2004)
Mutat Res
, vol.549
, pp. 241-253
-
-
Tong, W.1
Harris, S.2
Cao, X.3
Fang, H.4
Shi, L.5
Fuscoe, J.6
-
28
-
-
33847660095
-
PASSIM - an open source software system for managing information in biomedical studies
-
Viksna, J., Celms, E., Opmanis, M., Podnicks, K., Rucevskis, P., Zarins, A., et al. (2007). PASSIM - an open source software system for managing information in biomedical studies. BMC Bioinformatics 8, 52.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 52
-
-
Viksna, J.1
Celms, E.2
Opmanis, M.3
Podnicks, K.4
Rucevskis, P.5
Zarins, A.6
-
29
-
-
38549162759
-
CEBS - chemical effects in biological systems: A public data repository integrating study design and toxicity data with microarray and proteomics data
-
Epub, Oct. 25
-
Waters, M., Stasiewicz, S., Merrick, B.A. et al. (2008). CEBS - chemical effects in biological systems: a public data repository integrating study design and toxicity data with microarray and proteomics data. Nucleic Acids Res 36, D892-D900. Epub 2007, Oct. 25.
-
(2007)
Nucleic Acids Res
, vol.36
-
-
Waters, M.1
Stasiewicz, S.2
Merrick, B.A.3
-
30
-
-
45749115243
-
MIACA - minimum information about a cellular assay, and the cellular assay object model
-
Wiemann, S., Mehrle, A., Hahne, F., et al. MIACA - minimum information about a cellular assay, and the cellular assay object model. Nat Biotechnol community consultation: http:// www.nature.com/nbt/consult/index.html
-
Nat Biotechnol community consultation
-
-
Wiemann, S.1
Mehrle, A.2
Hahne, F.3
|